TCONS_00046948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046948
Unique NameTCONS_00046948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046948 ID=TCONS_00046948|Name=TCONS_00046948|organism=Clytia hemisphaerica|type=transcript|length=347bp
aaaatattcattttttccAACAAGTTGAAGTAGCTATATAATAGACAAAT
TTTGCTTAATCAGTATCagaatcaaaagatatttcttacACACAGTTTTA
AACCATCATCACAATGTGTGATGACATGTAAATTACATTGTCACACATTA
TTGTCATGAAGTGGTGTCAGGGTGTACAGTATGTCAAGTGAAAAAAGCAG
CCAAGCTGTCCCAGCTCTGTATGTCAATTTTCTGAATGCAAAACAGTCAT
CCACTTAACAAATTCCAGAGTGAGTGTCAATAATGTGATGAAGAGCTGTC
ACCACCCTGAACACTGTCACCAGTCGTCAAAGAAAGATGATGCTAGT
Run BLAST on NCBI

transcript from alignment at scaffold_118:153943..154289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046948 ID=TCONS_00046948|Name=TCONS_00046948|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_118:153943..154289 (Clytia hemisphaerica)
ACTAGCATCATCTTTCTTTGACGACTGGTGACAGTGTTCAGGGTGGTGAC
AGCTCTTCATCACATTATTGACACTCACTCTGGAATTTGTTAAGTGGATG
ACTGTTTTGCATTCAGAAAATTGACATACAGAGCTGGGACAGCTTGGCTG
CTTTTTTCACTTGACATACTGTACACCCTGACACCACTTCATGACAATAA
TGTGTGACAATGTAATTTACATGTCATCACACATTGTGATGATGGTTTAA
AACTGTGTgtaagaaatatcttttgattctGATACTGATTAAGCAAAATT
TGTCTATTATATAGCTACTTCAACTTGTTggaaaaaatgaatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029950XLOC_029950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046948-exon-scaffold_118-1491911889:153943..154289TCONS_00046948-exon-scaffold_118-1491911889:153943..154289Clytia hemisphaericaexon
TCONS_00046948-exon-scaffold_118-1510915933:153943..154289TCONS_00046948-exon-scaffold_118-1510915933:153943..154289Clytia hemisphaericaexon
TCONS_00046948-exon-scaffold_118-1575043694:153943..154289TCONS_00046948-exon-scaffold_118-1575043694:153943..154289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:153943..154289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54251	1.00279	0.291084	0.854341	0	0	0	0	0	0.536688	0	0.513651	0.341958	1.06538	0.729905	1.25328	0	0.593433	2.45958	1.42987	1.24282	3.2735	0.884304	0.267987	0	0	0	0.376212	0.856031	0.58144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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