TCONS_00046946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046946
Unique NameTCONS_00046946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046946 ID=TCONS_00046946|Name=TCONS_00046946|organism=Clytia hemisphaerica|type=transcript|length=202bp
GCTACTTGAAACGTGTTATAAAATTGTAGCTATAATATTGCATGACAGGC
TCCGCCCTGTTGCCGAATCCCTAGACAACGAAGCGCAATGTGGTTTTCGA
TCAGGGAGAGGATGTGCGGATGGAGTTTTTACCGTCAAAATGGCTATAAA
GAAGAGAAAAGAGCACGGCCTTGAATCTTGGGTCCTATTTTTGGATCTAG
TT
Run BLAST on NCBI

transcript from alignment at scaffold_118:26328..26529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046946 ID=TCONS_00046946|Name=TCONS_00046946|organism=Clytia hemisphaerica|type=transcript|length=202bp|location=Sequence derived from alignment at scaffold_118:26328..26529 (Clytia hemisphaerica)
AACTAGATCCAAAAATAGGACCCAAGATTCAAGGCCGTGCTCTTTTCTCT
TCTTTATAGCCATTTTGACGGTAAAAACTCCATCCGCACATCCTCTCCCT
GATCGAAAACCACATTGCGCTTCGTTGTCTAGGGATTCGGCAACAGGGCG
GAGCCTGTCATGCAATATTATAGCTACAATTTTATAACACGTTTCAAGTA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029948XLOC_029948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046946-exon-scaffold_118-1491911889:26328..26529TCONS_00046946-exon-scaffold_118-1491911889:26328..26529Clytia hemisphaericaexon
TCONS_00046946-exon-scaffold_118-1510915933:26328..26529TCONS_00046946-exon-scaffold_118-1510915933:26328..26529Clytia hemisphaericaexon
TCONS_00046946-exon-scaffold_118-1575043694:26328..26529TCONS_00046946-exon-scaffold_118-1575043694:26328..26529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:26328..26529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.23876	0	0	0	0	1.72569	0	7.79647	0	1.6903	2.66028	2.157	7.539	2.23695	2.75862	0.986806	1.21566	0.768697	2.72171	9.00681	0	0	0	1.68806	8.69329	4.65513	0	4.73954	1.79739	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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