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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046928 ID=TCONS_00046928|Name=TCONS_00046928|organism=Clytia hemisphaerica|type=transcript|length=1880bpRun BLAST on NCBI protein sequence of TCONS_00046928-protein >TCONS_00046928-protein ID=TCONS_00046928-protein|Name=TCONS_00046928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp MVYSNFNAILEFDSESCRESNFIVVTDVNVDGNFLIHHFISHFTKSNGSIRun BLAST on NCBI transcript from alignment at scaffold_118:219503..232369- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046928 ID=TCONS_00046928|Name=TCONS_00046928|organism=Clytia hemisphaerica|type=transcript|length=12867bp|location=Sequence derived from alignment at scaffold_118:219503..232369- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_118:219503..232369- >TCONS_00046928 ID=TCONS_00046928|Name=TCONS_00046928|organism=Clytia hemisphaerica|type=CDS|length=5187bp|location=Sequence derived from alignment at scaffold_118:219503..232369- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046928 vs. Swiss-Prot (Human)
Match: ELP6 (Elongator complex protein 6 OS=Homo sapiens GN=ELP6 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.117e-24 Identity = 75/270 (27.78%), Postives = 133/270 (49.26%), Query Frame = 3
Query: 108 VYSNFNAILEFDSESCRESNFIVVTDVNVDGNFLIHHFISHFTKSNGSISILGMAQTQTHYSSATHKLGVNLQQLLKDGRLKFIDGLQYVCDAFTDKTNERSP-----------LKDLTVIVDEAITSTSTHQNGHLF---VIDDLTALLNIGCSTQNVFDFVHHCKV---MSEKHNISFLLLSHADMEDDEYAVLSSRLQQYASLHINAQALRTGYSKDLSGEMQVYNFKNPYATSKKVLH--------FKLMDRDMRTFAPGTSSAVL 842
++ N +L + + ++ D DG+FL+HHF+S + K+N + + + Q+ +HYS KLGV+L + G+L F++GL+ D E P LK L V EA+ + + + ++DDL+ LL++G V DF+H+C+ K N+ L+ D ED+E +L + L + L + A+ L TG+ +D+ G++++ ++ P S+ +H +K+ D+ + FA G S AVL
Sbjct: 1 MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRIL-WRRP---SQPAVHRDQSFTYQYKIQDKSVSFFAKGMSPAVL 266 The following BLAST results are available for this feature:
BLAST of TCONS_00046928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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