TCONS_00046902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046902
Unique NameTCONS_00046902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046902 ID=TCONS_00046902|Name=TCONS_00046902|organism=Clytia hemisphaerica|type=transcript|length=656bp
taacgtcactttgctacaaaagtgccctgcgcttttttccaacacaaaaa
gtgcattttttgagtcaacgataaaccagttatcagacatttgctcgtac
aatatggaaatatttcacttgtTCCGGATTTTTTCcgtatataaaatatt
gtacggaaaaatctcggaactcgtaaaatatttctcatattgtactcgca
actctccgataactattacatattgtaatatATTTCAGAGCAAATGCTGT
CAAAAAGACAAATGCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCA
ATATTTTCAATCTGATGCGACGAGAACAGAATGCCAAAGAAACATCAAAG
TAATGCTCGTGTTTCTGTATTTACTAACTTTATTTGATTGGCTCATAACT
TGAATTATAACACTGCTTAAACTataaatgttggaaaaaaagttaaaatg
taTACTCACGTCTATGAAGTGTTTACATGGAACTGTGTCTTTTCATGGCT
TTGGTTTCATTCAGTGGGGACAAACTTGACGTTACTCGGAGCATATACCA
GTTCCACCTATCTTAGTTTTTTTATCTAACAATTATTTATTGTAATAGTt
tctgtaaaataaaaataaaagagttCACGATAAAAACATCCCTTCACACA
TTGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_118:342706..343361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046902 ID=TCONS_00046902|Name=TCONS_00046902|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_118:342706..343361+ (Clytia hemisphaerica)
taacgtcactttgctacaaaagtgccctgcgcttttttccaacacaaaaa
gtgcattttttgagtcaacgataaaccagttatcagacatttgctcgtac
aatatggaaatatttcacttgtTCCGGATTTTTTCcgtatataaaatatt
gtacggaaaaatctcggaactcgtaaaatatttctcatattgtactcgca
actctccgataactattacatattgtaatatATTTCAGAGCAAATGCTGT
CAAAAAGACAAATGCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCA
ATATTTTCAATCTGATGCGACGAGAACAGAATGCCAAAGAAACATCAAAG
TAATGCTCGTGTTTCTGTATTTACTAACTTTATTTGATTGGCTCATAACT
TGAATTATAACACTGCTTAAACTataaatgttggaaaaaaagttaaaatg
taTACTCACGTCTATGAAGTGTTTACATGGAACTGTGTCTTTTCATGGCT
TTGGTTTCATTCAGTGGGGACAAACTTGACGTTACTCGGAGCATATACCA
GTTCCACCTATCTTAGTTTTTTTATCTAACAATTATTTATTGTAATAGTt
tctgtaaaataaaaataaaagagttCACGATAAAAACATCCCTTCACACA
TTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029927XLOC_029927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046902-exon-scaffold_118-1491911889:342706..343361TCONS_00046902-exon-scaffold_118-1491911889:342706..343361Clytia hemisphaericaexon
TCONS_00046902-exon-scaffold_118-1510915933:342706..343361TCONS_00046902-exon-scaffold_118-1510915933:342706..343361Clytia hemisphaericaexon
TCONS_00046902-exon-scaffold_118-1575043694:342706..343361TCONS_00046902-exon-scaffold_118-1575043694:342706..343361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:342706..343361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0907157	0	0.118566	0.0115668	0	0	0.104082	0	0	0.169903	0.16587	0	0	0	0.360059	0.102816	0	0.175471	0.108843	0	0.256402	0	0.3262	0	0	0	0.242743	0.674385	0.270974	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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