TCONS_00046840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046840
Unique NameTCONS_00046840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046840 ID=TCONS_00046840|Name=TCONS_00046840|organism=Clytia hemisphaerica|type=transcript|length=326bp
caaaaattggAACAGTACACATTATTACTTTACGATCTTGATAAAACTCA
TCAAAGATTACCCATATGATTTTAGATGGACTCTGGACTTTGAGcgttga
aatcgaaagtaagcAACCATATCACAAAAATGAAGGCTGAGTTTTATCCC
TGGAAGTACCTTAAACGTAGCAATAATCATCAATAGCGGtataaatgcat
cgagagcgctagatgtACTTTTCATTGGATACTtctgatgatgtagcgcc
gtttgagGTCAtctttttaacactgcaatgactACTTTGTGGGTACCATT
TTAAAaatctccgatcaaagatggcg
Run BLAST on NCBI

transcript from alignment at scaffold_117:181740..182065

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046840 ID=TCONS_00046840|Name=TCONS_00046840|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_117:181740..182065 (Clytia hemisphaerica)
cgccatctttgatcggagattTTTAAAATGGTACCCACAAAGTagtcatt
gcagtgttaaaaagaTGACctcaaacggcgctacatcatcagaAGTATCC
AATGAAAAGTacatctagcgctctcgatgcatttataCCGCTATTGATGA
TTATTGCTACGTTTAAGGTACTTCCAGGGATAAAACTCAGCCTTCATTTT
TGTGATATGGTTgcttactttcgatttcaacgCTCAAAGTCCAGAGTCCA
TCTAAAATCATATGGGTAATCTTTGATGAGTTTTATCAAGATCGTAAAGT
AATAATGTGTACTGTTccaatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029884XLOC_029884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046840-exon-scaffold_117-1491911889:181740..182065TCONS_00046840-exon-scaffold_117-1491911889:181740..182065Clytia hemisphaericaexon
TCONS_00046840-exon-scaffold_117-1510915933:181740..182065TCONS_00046840-exon-scaffold_117-1510915933:181740..182065Clytia hemisphaericaexon
TCONS_00046840-exon-scaffold_117-1575043694:181740..182065TCONS_00046840-exon-scaffold_117-1575043694:181740..182065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:181740..182065 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.201938	0.403314	0.209423	0	0.184769	0	0.233303	5.15714	0.337286	0	0	0	0	0	0	0.415764	0.443715	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top