TCONS_00046831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046831
Unique NameTCONS_00046831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046831 ID=TCONS_00046831|Name=TCONS_00046831|organism=Clytia hemisphaerica|type=transcript|length=483bp
gTTGATGGAGAGAGAGTGCTCCATCGTTATGAACATTTGATTGGCCGTGT
TGTTAATGTTTCTGTGTTTTAATTAGTATTCCCTGTAGATTCTTTCAGTT
TTCATGTGTCTCTTGAGTCCTCTTTTGTTTAGTGTCCCTTTTGTTTTAAG
TGTCTTTTGTATCCCCAAATTGCGTTTTATACGTTTTATATATCATTTGT
AATTCCTCTAGGGAAATTAGGATATGTTTATTAACTGTAAATTTGGTAGA
TAGGAATTAGTTCAACACTGAGAGACGTGAGTGAGTGTCTTGTGTGTGAG
AGGTGCGTTTTACTAAAATTTAATTTACTGTCGTTTTATTTCGgttcttt
ttggttttgttaCATTTTAAGTTGGTTTAAGTTCAAGAATTGGTGTTtgc
attttacattttctgTTCTCCATTTTCTGTTTGGTTTCCTTAGGTTAGGT
TCCTTTTTGTCCATTAAGGCTGAGATATTTCGA
Run BLAST on NCBI

transcript from alignment at scaffold_117:71368..71850

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046831 ID=TCONS_00046831|Name=TCONS_00046831|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at scaffold_117:71368..71850 (Clytia hemisphaerica)
TCGAAATATCTCAGCCTTAATGGACAAAAAGGAACCTAACCTAAGGAAAC
CAAACAGAAAATGGAGAAcagaaaatgtaaaatgcaAACACCAATTCTTG
AACTTAAACCAACTTAAAATGtaacaaaaccaaaaagaacCGAAATAAAA
CGACAGTAAATTAAATTTTAGTAAAACGCACCTCTCACACACAAGACACT
CACTCACGTCTCTCAGTGTTGAACTAATTCCTATCTACCAAATTTACAGT
TAATAAACATATCCTAATTTCCCTAGAGGAATTACAAATGATATATAAAA
CGTATAAAACGCAATTTGGGGATACAAAAGACACTTAAAACAAAAGGGAC
ACTAAACAAAAGAGGACTCAAGAGACACATGAAAACTGAAAGAATCTACA
GGGAATACTAATTAAAACACAGAAACATTAACAACACGGCCAATCAAATG
TTCATAACGATGGAGCACTCTCTCTCCATCAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029875XLOC_029875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046831-exon-scaffold_117-1491911889:71368..71850TCONS_00046831-exon-scaffold_117-1491911889:71368..71850Clytia hemisphaericaexon
TCONS_00046831-exon-scaffold_117-1510915933:71368..71850TCONS_00046831-exon-scaffold_117-1510915933:71368..71850Clytia hemisphaericaexon
TCONS_00046831-exon-scaffold_117-1575043694:71368..71850TCONS_00046831-exon-scaffold_117-1575043694:71368..71850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:71368..71850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.77331	3.87309	5.43785	5.16322	1.71717	1.24687	2.58956	2.98314	1.18847	2.51012	1.50316	4.44444	2.09817	3.44373	3.10056	2.54817	1.22011	2.98395	5.23654	6.85304	4.58686	4.80661	5.75099	5.39009	0	0.630974	14.4061	13.8319	2.21713	0.8349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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