Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046799 ID=TCONS_00046799|Name=TCONS_00046799|organism=Clytia hemisphaerica|type=transcript|length=1238bpRun BLAST on NCBI protein sequence of TCONS_00046799-protein >TCONS_00046799-protein ID=TCONS_00046799-protein|Name=TCONS_00046799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp MESSQYFEEDIELNATQQAILNAPAGSGYALTKRGIYTHWPFNKPIAYHIRun BLAST on NCBI transcript from alignment at scaffold_117:152659..164556- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046799 ID=TCONS_00046799|Name=TCONS_00046799|organism=Clytia hemisphaerica|type=transcript|length=11898bp|location=Sequence derived from alignment at scaffold_117:152659..164556- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:152659..164556- >TCONS_00046799 ID=TCONS_00046799|Name=TCONS_00046799|organism=Clytia hemisphaerica|type=CDS|length=9990bp|location=Sequence derived from alignment at scaffold_117:152659..164556- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046799 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 7.291e-27 Identity = 77/220 (35.00%), Postives = 107/220 (48.64%), Query Frame = 3 Query: 21 FEEDIELNATQQAILNAPAGSGYALTKRGIYTHWPFNKPIAYHIDDVYEKSQYHRVKLENALKDYEAQTCLRFVKRTNERQYINFGSGKGCSSMVGMQANG-NFIRLARGCFSHGTLLHEIAHSLGIWHEQNRPDRDLYIKVRPEN-MACCSYQFRKMHASHIDSLGFPYDLESMMHYSSRAFGNGKGPTIEPL--DKTKSIGQRRGFSRIDVMQINAMY 668 FE DI L+ Q I N+ G Y WP P Y ++D E + + + NA + Y +TC+ F E YI+ G GC S VG + G + + C T+ HE H+LG WHEQ+R DRD Y+++ + ++ + F DSL PYD S+MHYS AF NG PTI D IGQR FS D++++N +Y Sbjct: 49 FEGDIRLDRAQ--IRNSIIGEKY---------RWPHTIP--YVLEDSLEMNA--KGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253 The following BLAST results are available for this feature:
BLAST of TCONS_00046799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|