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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046791 ID=TCONS_00046791|Name=TCONS_00046791|organism=Clytia hemisphaerica|type=transcript|length=3704bpRun BLAST on NCBI protein sequence of TCONS_00046791-protein >TCONS_00046791-protein ID=TCONS_00046791-protein|Name=TCONS_00046791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1019bp MPGGKANFERLLDAATSQMLLEPNWVTNLEICDSVRQNDVTSKYALQAIRRun BLAST on NCBI transcript from alignment at scaffold_117:42846..55832- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046791 ID=TCONS_00046791|Name=TCONS_00046791|organism=Clytia hemisphaerica|type=transcript|length=12987bp|location=Sequence derived from alignment at scaffold_117:42846..55832- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:42846..55832- >TCONS_00046791 ID=TCONS_00046791|Name=TCONS_00046791|organism=Clytia hemisphaerica|type=CDS|length=58140bp|location=Sequence derived from alignment at scaffold_117:42846..55832- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046791 vs. Swiss-Prot (Human)
Match: HGS (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 4.916e-76 Identity = 128/272 (47.06%), Postives = 180/272 (66.18%), Query Frame = 2
Query: 74 MPGGKANFERLLDAATSQMLLEPNWVTNLEICDSVRQNDVTSKYALQAIRKRMKDSNPHVCKYALVVLETCVKNCGEAFHEELASHEFMNEIRNLAQTG-SAPVKEQVLSMLQAWNHAFRNNTKYQPILATYNLMKMEGYNFPAMSESDAMFSSDTAPSWKEGDVCHLCRVKFGTFTRQHHCRACGEVFCNSCXXXXXXXXXXGIEREVRVCDPCFDEINPXXXXXXXXXXXXXXXXXXXXXXXXXXXELPAEYLNSALAKEPQTKPKINEN 886
M G FERLLD ATSQ+LLE +W + L+ICD +RQ D +KYA+ +I+K++ D NPHV YAL V+E+ VKNCG+ H+E+A+ + M E+++L + V+ ++L ++QAW HAFRN KY+ + TY +MK+EG+ FP ESDAMF+++ AP W + + CH CRV+FG TR+HHCRACG++FC CSSK S IPK GIE+EVRVC+PC++++N + G ELP EYL S L+++ Q PK +E
Sbjct: 1 MGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN-----------------RKAEGKATSTTELPPEYLTSPLSQQSQLPPKRDET 255 HSP 2 Score: 108.227 bits (269), Expect = 1.072e-23 Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 2
Query: 1157 ELDKYLDRSYWEKKNQES-ATRAPSAPVVMETQQPAAQ---QQVMTNGDVYASVPYQTPQGAIAXXXXXXXXXXXNERFQS--DAFVNTMEKSIDMFVQQMTKLQTKGKHIALDTSVQSLFHSLSAMHPQLLQLIEDEAESKAKYEAMLQKLAVIREARETLDDMRAQHQEKMRQQELEQEMLRRMQMEQKLELMR 1726
EL +YL+R+YWEKK +E+ + PSAPV + +PAAQ V +P Q E + N + + F+ ++ ++ FV +M +G+ I D++V SLF S++ MHPQLL+L+ E + YE + KLA IR+AR L +R +H+EK+R+ E E R++Q+ QKLE+MR
Sbjct: 325 ELARYLNRNYWEKKQEEARKSPTPSAPVPLT--EPAAQPGEGHAAPTNVVENPLPETDSQPIPPSGGPFSEPQFHNGESEESHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMR 518 The following BLAST results are available for this feature:
BLAST of TCONS_00046791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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