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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046785 ID=TCONS_00046785|Name=TCONS_00046785|organism=Clytia hemisphaerica|type=transcript|length=1423bp
GAACAAGAAGTGAAGGCCAAAGAAAAGTGAAAGCAATGTtaattgaattt
ctttattttattgattATGCTGGAAGGACATTCTTTATGCTTGATAGACA
AAAAGTTGATTGACCAAAGCAAACAGCACCAAGACAGaaacaataaagaa
aaatggCTGAAGAAATTGAGGCACAAACTTTCCCAAATATAGAAGATAAT
GATTCAAGCTCACAGCTAGGTTCAAATGCTTCCAATgaagttttaaaaga
acaagACGCAGATGTTATTGACGAAACAGCAAGTATGATAAATGTTGAAG
AATACAAACACGAATCTATTGTTAAGGATATCCCAAAGACTGAATTAGAG
AAAATGACACCAAGTTGGAAGACAAAGATCATTGAGAAAATACCAGCAGA
GGAATTAGATGGTCTatctaaaaatcagaaaaaaaagttgtttaagAAGA
AGATCTTTGAAGAAACACGACATGAGAGACGACAAGAAGAACGCTCACGT
CGTAAAGAGAAACGCAAAAAGGAAAAGGAGTTAGGACTGGAGGTTCCGCG
GAAATTACGTGctaaacatttcaaaaatattgaataccGTGACCCCAATA
TTGTCATTGATTTAGATTTCTATGAGTTGATGAATGAAACTGATGTTAGG
ATGGTTGTGAAGCAGGTTAATTCTTGTTATTCCATCAACCGAAAAGCAAA
ACATCCTGTTCATTTACATGCAACTAGCTTTCATGGACCTTTGAAAGACT
TATTTGTAAAGCTACAACCAGGTAGTCCACATTGGGACTTTCATTTCCAA
GAGAAAGACTACATTGATTTGTTTCAGAAAGAGAAGATAGTCTACTTATC
GTCAGATTCGGATAATGTTCTAGAGAAAATGGATGAAAATAAAGTCTATG
TGATTGGAGGCTTAGTAGATCATAATCAACATAAAGGACTTTGTTTAAAG
CGAGCCCAAGAGAAGGGATTAGCTCATGCTAAACTACCTATTAACAAATT
CATCTCATTATCAACAAGAAAAGTATTGACTATCAATCACGTCTTTGAGA
TTTTATCCAAGAACCTTGAAACTAGAGATTGGAAAGAATCCTTTTTCTCA
GTGCTGCCAAAAAGGAAAGGGATCGAAGACAAGAAAGAAGAAGTTGTTGT
GGCAACctaaatgattttgttttaatGTTGGGTTTTTGTTTGGGTTGGAA
CAAAATTTTTCTACATAATCTTTAGGTTAATTATATTATCAAACTATCTA
TTTAGTttctttttgtatcttttttaaaagaaaaaagagctcACAATTTA
ACATTATTTCAAGGTAAAATTATTACtttcttttgtaatatttttggtgt
tgaagagtcaaaaaggttaaaaaaggtcACAGTTATTTCATTTCTGGAGT
CTTCAAAATCTCTATGATAGGAC Run BLAST on NCBI transcript from alignment at scaffold_117:492209..495318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046785 ID=TCONS_00046785|Name=TCONS_00046785|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at scaffold_117:492209..495318+ (Clytia hemisphaerica)
GAACAAGAAGTGAAGGCCAAAGAAAAGTGAAAGCAATGTtaattgaattt
ctttattttattgattATGCTGGAAGGACATTCTTTATGCTTGATAGACA
AAAAGTTGATTGACCAAAGCAAACAGCACCAAGAGTAAGTTTACAGTATA
GTCATACTATGCCATAGTCAGATAGATTGAAACCCCTAAAAACTCTCACT
TTCCCACGACGGTCACGGTGGTGATGACTTCTTCTTCTTTCGTATAATAA
GTTTAAGTGAATAACACAAACAGCTCTATTTTTGGGATCTGGCCTGGCGG
AATAGTGTACCGTAggacggggtgaatcggataccCGGGGTGAATTGGAT
ACCCGGGGTGAATTGGATACCCGAGGGTGAATCGGATAATTTGTTTATAA
TCCCCGGGGATGTCTTTTTCCATTCTGTTTTCAGATCCCGTTCACTGATC
GATCAAGCTATTTCTATTTAATCAGGCGACCTAGTAGGGTTTGGTATGGA
TGTGGTTATGTATCAGGTTGTCTAGGAATAGGGTTAAATTTACAATTGCA
AAAACGGTGCAAAACTTCATGATTTCCGATACTGTAGCtatattcaagat
tttttaaggcaaaatcTTGGATTTCCCAATAAATAGCAATGAAATAGAGC
ATAGAATagaaattttatggattttctgaTACTGATGACCAAATAATTAG
GAAAATCCTGCATTTTCCGGgaccttttttaaaaatctttcaggATTTCC
AAGTGATAAATAATTCCAAAAAACCCTGTCATCCACCGGCAAATAATGTG
TGTTTCCATTTCAAGAAATGACGTGCAAGTCATCGATGACCATCTGGAAA
TAAGGCTGCAAtaacaaataacttgtgttcatgtcagaaagtttcaaaat
acTGTACCTTTCccataattcaaatttctcagaaatgacaagaaaatgtt
tcatttcCCTTCGTACCTCCAAAAATAGGgcaaaatcagaatcccccctt
tataaaggggggggggcactatgGCCTGCAAGGGGTTAGGGCAAGTATCT
ATCTCTCAATATCTTTTTGggaattttcagggtggtatgaTGAAAAAAAC
ATATCATAATTTGAaagggaaaagaaaagaaaagctaaaaaaaccccaac
aattaaattatttttgaaaaaaattgtcttgCAAAATCGTCTGCTTGCGA
AAATTAAGGTTGAaacaatttttctttgctttttggtCTATCTGTCTCTT
TCataatcaggtaggtccaatcagcATCCAGCTTGTTGTCCCTAAAACAT
TGAACATTGGTCGAATtgaattagtcccaataagggttgtaaaattcaca
aaatttttcagTTGTTCCTCTTTTTTAAGTCCTGCTAAGTGTGCGACGGT
CAAAAGAAGTCAGGTGGCATACCCCGTCAgcttccaaccccccccccccN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNccccccccccccggttgaAAACGAAATA
TGATATTAAGAAAGTTCAAATTGTAGGAAAAAGTAggaattgatttttga
tttatttaatgGCATAATGATCATTTTTCTATGAATCATGGATCACATGA
TTTGCTGCAATCCTTGTTGGGCTTAGTCAATAACTTTCCACACGAAAATT
TCTCTGAGACCAGACAATGTTTTGACTTCTCATTACTCAAAACAGCACAG
GAAGTACAGGTACTACATAAATTGACTGTCATAGCCTCCTTGGGacgaaa
acttttttaaattctatCTAGCAGaaacaataaagaaaaatggCTGAAGA
AATTGAGGCACAAACTTTCCCAAATATAGAAGATAATGATTCAAGCTCAC
AGCTAGGTTCAAATGCTTCCAATgaagttttaaaagaacaagACGCAGAT
GTTATTGACGAAACAGCAAGTATGATAAATGTTGAAGAATACAAACACGA
ATCTATTGTTAAGGATATCCCAAAGACTGAATTAGAGAAAATGACACCAA
GTTGGAAGACAAAGATCATTGAGAAAATACCAGCAGAGGAATTAGATGGT
CTatctaaaaatcagaaaaaaaagttgtttaagAAGAAGATCTTTGAAGA
AACACGACATGAGAGACGACAAGAAGAACGCTCACGTCGTAAAGAGAAAC
GCAAAAAGGAAAAGGAGTTAGGACTGGAGGTTCCGCGGAAATTACGTGct
aaacatttcaaaaatattgaataccGTGACCCCAATATTGTCATTGATTT
AGATTTCTATGAGTTGATGAATGAAACTGATGTTAGGATGGTTGTGAAGC
AGGTTAATTCTTGTTATTCCATCAACCGAAAAGCAAAACATCCTGTTCAT
TTACATGCAACTAGCTTTCATGGACCTTTGAAAGACTTATTTGTAAAGCT
ACAACCAGGTAGTCCACATTGGGACTTTCATTTCCAAGAGAAAGACTACA
TTGATTTGTTTCAGAAAGAGAAGATAGTCTACTTATCGTCAGATTCGGAT
AATGTTCTAGAGAAAATGGATGAAAATAAAGTCTATGTGATTGGAGGCTT
AGTAGATCATAATCAACATAAAGGACTTTGTTTAAAGCGAGCCCAAGAGA
AGGGATTAGCTCATGCTAAACTACCTATTAACAAATTCATCTCATTATCA
ACAAGAAAAGTATTGACTATCAATCACGTCTTTGAGATTTTATCCAAGAA
CCTTGAAACTAGAGATTGGAAAGAATCCTTTTTCTCAGTGCTGCCAAAAA
GGAAAGGGATCGAAGACAAGAAAGAAGAAGTTGTTGTGGCAACctaaatg
attttgttttaatGTTGGGTTTTTGTTTGGGTTGGAACAAAATTTTTCTA
CATAATCTTTAGGTTAATTATATTATCAAACTATCTATTTAGTttctttt
tgtatcttttttaaaagaaaaaagagctcACAATTTAACATTATTTCAAG
GTAAAATTATTACtttcttttgtaatatttttggtgttgaagagtcaaaa
aggttaaaaaaggtcACAGTTATTTCATTTCTGGAGTCTTCAAAATCTCT
ATGATAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046785-exon-scaffold_117-1491911889:492209..492342 | TCONS_00046785-exon-scaffold_117-1491911889:492209..492342 | Clytia hemisphaerica | exon |
| TCONS_00046785-exon-scaffold_117-1510915933:492209..492342 | TCONS_00046785-exon-scaffold_117-1510915933:492209..492342 | Clytia hemisphaerica | exon |
| TCONS_00046785-exon-scaffold_117-1575043694:492209..492342 | TCONS_00046785-exon-scaffold_117-1575043694:492209..492342 | Clytia hemisphaerica | exon |
| TCONS_00046785-exon-scaffold_117-1491911889:494030..495318 | TCONS_00046785-exon-scaffold_117-1491911889:494030..495318 | Clytia hemisphaerica | exon |
| TCONS_00046785-exon-scaffold_117-1510915933:494030..495318 | TCONS_00046785-exon-scaffold_117-1510915933:494030..495318 | Clytia hemisphaerica | exon |
| TCONS_00046785-exon-scaffold_117-1575043694:494030..495318 | TCONS_00046785-exon-scaffold_117-1575043694:494030..495318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:492209..495318 + |
Blast
BLAST of TCONS_00046785 vs. Swiss-Prot (Human)
Match: TM10A (tRNA methyltransferase 10 homolog A OS=Homo sapiens GN=TRMT10A PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.016e-52 Identity = 85/175 (48.57%), Postives = 125/175 (71.43%), Query Frame = 3
Query: 600 IVIDLDFYELMNETDVRMVVKQVNSCYSINRKAKHPVHLHATSFHGPLKDLFVKLQPGSPHW-DFHFQEKDYIDLFQKEKIVYLSSDSDNVLEKMDENKVYVIGGLVDHNQHKGLCLKRAQEKGLAHAKLPINKFISLSTRKVLTINHVFEILSKNLETRDWKESFFSVLPKRKG 1121
++ID F LM D++ + KQ+ CY+ NR+A HPV + TS G LK + G +W D H + + Y +L +KE ++YL+SDS N+L+++DE+K YVIGGLVDHN HKGL K+A + G+ HA+LP+ F+ +++RKVL +NHVFEI+ + LETRDW+E+FF++LP+RKG
Sbjct: 103 LIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMNSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKG 277
The following BLAST results are available for this feature:
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