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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046718 ID=TCONS_00046718|Name=TCONS_00046718|organism=Clytia hemisphaerica|type=transcript|length=2987bpRun BLAST on NCBI protein sequence of TCONS_00046718-protein >TCONS_00046718-protein ID=TCONS_00046718-protein|Name=TCONS_00046718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp MIVHGIVYRKIKTKTKMSFYGFKKQFNKTSQFLSEKVAGNKGSQLDEEYVRun BLAST on NCBI transcript from alignment at scaffold_116:828342..847138- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046718 ID=TCONS_00046718|Name=TCONS_00046718|organism=Clytia hemisphaerica|type=transcript|length=18797bp|location=Sequence derived from alignment at scaffold_116:828342..847138- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:828342..847138- >TCONS_00046718 ID=TCONS_00046718|Name=TCONS_00046718|organism=Clytia hemisphaerica|type=CDS|length=13860bp|location=Sequence derived from alignment at scaffold_116:828342..847138- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046718 vs. Swiss-Prot (Human)
Match: SH3G3 (Endophilin-A3 OS=Homo sapiens GN=SH3GL3 PE=1 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 1.083e-98 Identity = 163/371 (43.94%), Postives = 235/371 (63.34%), Query Frame = 1
Query: 73 MSFYGFKKQFNKTSQFLSEKVAGNKGSQLDEEYVELERKVDIVTQGIGDFQAKVKEYLQPNPNARTRLAMQGAIQKAKGQQRNVRYPQPEFNLGDVFTRAGASLDDGSPYCSALTDLGEAFNQISEFKDTMEYSVKQNFLDPLFQIQQKDLKEIQHHRKKLESRRLDFDYKKGKGAKVPEEELQMAEEKFDESKNLSYNSMMNFMESDVEHVGQLHSFTEAVAEYHKQCAEVMERVCAELGEKLNEAASRPRAERSFISRPVSKFST---GSTEFEVLEADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYDFEPENEGELPFNEGDMIELTGRIDENWLEGRFNGHSGYFPENYVEIVVPL 1176
MS G KKQF+K SQ SEK++G +G++LD+E++++ERK+D+ + + + +K EYLQPNP R +L M + K +GQ + YPQ E LGD + G L + S + +AL ++GE+ ++E KD+++ +VKQ F+DPL +Q KDLKEI HH KKLE RRLD+DYKK + K+P+EE++ A EKF+ESK L+ SM NF+E+DVE V QL F EA +YH+Q E+++ + ++L +++ A+S PR R + RPV + S+ G + V++ G P P R +YDFEPEN+GEL F EGD+I LT +IDENW EG +G SG+FP NYVE++VPL
Sbjct: 1 MSVAGLKKQFHKASQLFSEKISGAEGTKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAASSVPR--REYKPRPVKRSSSELNGVSTTSVVKTTG------------------------SNIPMDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL 345 The following BLAST results are available for this feature:
BLAST of TCONS_00046718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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