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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046703 ID=TCONS_00046703|Name=TCONS_00046703|organism=Clytia hemisphaerica|type=transcript|length=3160bpRun BLAST on NCBI protein sequence of TCONS_00046703-protein >TCONS_00046703-protein ID=TCONS_00046703-protein|Name=TCONS_00046703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=723bp MLKGSSGVRMLIQRVRNILQRKLPSKQLTFCMLRTLSSLATNEKQYPIEMRun BLAST on NCBI transcript from alignment at scaffold_116:357946..412937- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046703 ID=TCONS_00046703|Name=TCONS_00046703|organism=Clytia hemisphaerica|type=transcript|length=54992bp|location=Sequence derived from alignment at scaffold_116:357946..412937- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:357946..412937- >TCONS_00046703 ID=TCONS_00046703|Name=TCONS_00046703|organism=Clytia hemisphaerica|type=CDS|length=43440bp|location=Sequence derived from alignment at scaffold_116:357946..412937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046703 vs. Swiss-Prot (Human)
Match: SYTC (Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3) HSP 1 Score: 1088.95 bits (2815), Expect = 0.000e+0 Identity = 506/678 (74.63%), Postives = 583/678 (85.99%), Query Frame = 2
Query: 341 EMNPLPAYIEERLKIFDEIKAEHDASM-EAKEKTS--IKITLPDGKQVDGFSWKTTPYEVAQGISQGLADNSVVAKVNGVLWDLDRPVEEDCTIELVKFDQPEGQQVFWHSSAHILGEAMERHYGGCLCYGPPIEEGFYYDMSIDDRQVSSNDFSALESVVKKIIKEKQQFVRLEMKKEDLLKMFAYNPFKLRILNERVTTPTTTVYRCGPLIDLCRGPHVRHTGKTKAIAVTKNSATYWEGKAEAESLQRIYGISFPNDKMLKEWKHFQEEAAKRDHRKIGREQELFFFHELSPGSCFFLPNGAHIYNTLVKFIRDEYKKRGFQEVISPNIYSTKLWETSGHWQHYSTNMFSFEVEKERYALKPMNCPGHCVMFDHRPRSWRELPLRMADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCRPDQIEEEIKSCLAFLRHVYDIFGFSFKLNLSTRPEKYMGDINMWNTAEKQLENSLNEFGEAWELNPGDGAFYGPKIDIQIKDALRRYHQCATIQLDFQLPERFNLNYVTGEGDERKRPVIIHRAILGSVERMMAILTENYGGKWPFWLSPRQAIVVPVSPKYDEYAKKVADDLKASDFKAEANLDAGETLNKKIRNAQLAHYNFILVVGDKEQSSNTVNVRTRDNKVHGEKTVEALFARFNDLMKTKKDDSEAEF 2365
E+NP P YI RL++++ +KAEHD+ + E EK S IK+TLPDGKQVD SWKTTPY++A GISQGLADN+V+AKVN V+WDLDRP+EEDCT+EL+KF+ E Q V+WHSSAHI+GEAMER YGGCLCYGPPIE GFYYDM +++ VSSNDFS+LE++ KKIIKEKQ F RLE+KKE LL MF YN FK RILNE+V TPTTTVYRCGPLIDLCRGPHVRHTGK KA+ + KNS+TYWEGKA+ E+LQRIYGISFP+ KMLKEW+ FQEEA RDHRKIGR+QEL+FFHELSPGSCFFLP GA+IYN L++FIR EY+KRGFQEV++PNI++++LW TSGHWQHYS NMFSFEVEKE +ALKPMNCPGHC+MFDHRPRSWRELPLR+ADFGVLHRNELSG LTGLTRVRRFQQDDAHIFC +QIE+EIK CL FLR VY +FGFSFKLNLSTRPEK++GDI +W+ AEKQLENSLNEFGE WELN GDGAFYGPKIDIQIKDA+ RYHQCATIQLDFQLP RFNL YV+ +GD++KRPVI+HRAILGSVERM+AILTENYGGKWPFWLSPRQ +VVPV P DEYA+KV + F A+ +LD G TLNKKIRNAQLA YNFILVVG+KE+ S TVN+RTRDNKVHGE+T+ R L + + +E EF
Sbjct: 46 ELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEEF 723 The following BLAST results are available for this feature:
BLAST of TCONS_00046703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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