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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046696 ID=TCONS_00046696|Name=TCONS_00046696|organism=Clytia hemisphaerica|type=transcript|length=9969bp transcript from alignment at scaffold_116:160100..241333- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046696 ID=TCONS_00046696|Name=TCONS_00046696|organism=Clytia hemisphaerica|type=transcript|length=81234bp|location=Sequence derived from alignment at scaffold_116:160100..241333- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046696 vs. Swiss-Prot (Human)
Match: LAMA1 (Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2) HSP 1 Score: 320.087 bits (819), Expect = 5.023e-87 Identity = 258/842 (30.64%), Postives = 364/842 (43.23%), Query Frame = 3
Query: 87 RKFDYIDTRWHHYVVSTISMVARCDCNGHGDGLSCPLNKITGNRKCDCLDNTCGDRCERCCPAFNQYPWRKGSRTSWISDNTTACEQCNCHNHSDTCRYDADVAKNELSLDMKGQYAGGGVCLNCRDNTEGINCEKCQKYFYRPPGVDVTSLGACPPCKCHPAGSRATGQGISYLECVRDQEMALFHD-RNVGDCFCRSNVIGTKCDTCKDGFYRLELSNPNGCRSCRCYLAGTFQRLNICHKDFFGQCPCKANVKLRDCSSCKDGYYNLQNDNPNGCTWCDC----DVGGSIS-PYICDKSTGTCTCRAHIKSKRCKEVEDGFYFPDMHYIS----------ALRYQYAQATDSLSTKIT-------------IPHDSTYKLFIGYTLLTRNIVNVELRMSFEGSSALLFGPAYPGASLFFCNEECREGFQSSGNGD----FVLKAGVYQVQIVSQGSNNGLKLERLIAIPLQFMQASILTSEDRTLFQTSCSVEANDLRIG--TTSAAVCLAGAFSMT-VKFEDGALPCNCNPIGSINSTCNKVAGQCF-CKPGVTGRDCSRCSPGFYNFTSHG----CQACGCK----------------GVDKICN---PQTGECNCPE---------NFQGRVCDACQCNGNSNKCQR------DGKCLDCQSNTFGDHCEMCKPSFYGDALQG-DCKACGCHAEGAINTTCHMITGQCFCRPGVIGKTCSQCDINHYDL-TDTGCKSCRCNEHGSALLQCNNAGVCSCLSSAEGMKCDLCSAGFFGLPDKPCQSCDCNSTGTVTSTTCKNDVHGQCVCKTGVDGRQCDTCRKQYADF-GPSGCRQC 2378
++ D I TR ++Y + IS+ C C GH SCP ++ T +C C NTCG+ C RCCP ++Q PWR G+ +S CE CNCHN + C YD VAK + SL+ GQ+ GGGVC+NC NT GINCE C +YRP V C PC C P GS ++ C++D + H+ + G C C+ G KCD C+ G+ + C SC C G+ + G C CK NV+ + C CK G+YNL+ NP GC+ C C DV S+S P S I ++ +D H +S A +Y +A L K+T IP ++ + + + + L EG L P ++ E + F S D + A V + I + ++ + L RL ++ L + S + + VE + G TS CL+G + + + F PC C+ + CN V G C C TG C +C PGFY S G CQ C C G + +C+ P C G C C C+GN + + G+CL C NT G HCE C FYGDA+ +C+AC CH +G+ + CH+ TG C C+P V G+ C QC +Y L + GC+ C C+ GS C + G C C+ G +CD C+ GF+ D C CDC T TC + G+CVC G +C+ C + + GC+ C
Sbjct: 247 KELDPIVTRRYYYSIKDISVGGMCICYGHAS--SCPWDETTKKLQCQCEHNTCGESCNRCCPGYHQQPWRPGTVSS-----GNTCEACNCHNKAKDCYYDESVAKQKKSLNTAGQFRGGGVCINCLQNTMGINCETCIDGYYRPHKVSPYEDEPCRPCNCDPVGSLSS-------VCIKDDLHSDLHNGKQPGQCPCKEGYTGEKCDRCQLGY-----KDYPTCVSCGCNPVGSAS-----DEPCTGPCVCKENVEGKACDRCKPGFYNLKEKNPRGCSECFCFGVSDVCSSLSWPVGQVNSMSGWLVTDLISPRKIPSQQDA--LGGRHQVSINNTAVMQRLAPKYYWAAPEAYLGNKLTAFGGFLKYTVSYDIPVETVDSNLMSHADVIIKGNGLTLSTQAEG---LSLQPYEEYLNVVRLVPENFQDFHSKRQIDRDQLMTVLANVTHLLIRANYNSAKMALYRLESVSLD------IASSNAIDLVVAADVEHCECPQGYTGTSCESCLSGYYRVDGILFGGICQPCECH---GHAAECN-VHGVCIACAHNTTGVHCEQCLPGFYGEPSRGTPGDCQPCACPLTIASNNFSPTCHLNDGDEVVCDWCAPGYSGAWCERCADGYYGNPTVPGESCVPCDCSGNVDPSEAGHCDSVTGECLKCLGNTDGAHCERCADGFYGDAVTAKNCRACECHVKGSHSAVCHLETGLCDCKPNVTGQQCDQCLHGYYGLDSGHGCRPCNCSVAGSVSDGCTDEGQCHCVPGVAGKRCDRCAHGFYAYQDGSCTPCDCPH----TQNTCDPET-GECVCPPHTQGVKCEECEDGHWGYDAEVGCQAC 1044 HSP 2 Score: 165.236 bits (417), Expect = 4.150e-40 Identity = 266/1209 (22.00%), Postives = 435/1209 (35.98%), Query Frame = 3
Query: 156 CDCNGHGDGLSCPL-NKITGNRKC-DCLDNTCGDRCERCCPAFNQYPWRKGSRTSWISDNTTA--CEQCNCH---NHSDTCRYDADVAKNELSLDMKGQYAGGGVCLNCRDNTEGINCEKCQKYFYRPPGVDVTSLGACPPCKCHPAGSRATG----------QGISYLECVRDQEMALFH-----------------DRNVGDCFCRSNVIGTKCDTCKDGFYRLELSNPNGCRSCRCYLAG-TFQRLNICHKDFFGQCPCKANVKLRDCSSCKDGYYNLQNDNPNGCTWCDCDVGGSISPYI--------CDKSTGTCTCRAHIKSKRCKEVEDGFYFPDMH--------YISALRYQYAQATDSLSTKITIPHDSTYKLFIGYTLL--------------------TRNIVNVE-----LRMSFEGSSALLFGPAYPGASLFFCNEECREGFQSSGNGDF----VLKAGVYQVQIV---SQGSNNGLKLERLIAIPLQFMQASILTSEDRTLFQTSCSVEAN-DLRIGTTSAAVCLAGAFSMTVKFEDGALPCNCNPIGSINSTCNKVAGQCFCKPGVTGRDCSRCSPGFYNFTSHGCQACGCKGVDKICNPQTGECNCPENFQGRVCDACQCNGNSNKCQRD-GKCLDCQSNTFGDHCEMCKPSFYGDAL--QGDCKACGC-HAEGAINTTCHMITGQCFCRPGVIGKTCSQCDINHYDLTDTGCKSCRCNEHGSALLQCNNAGVCSCLSSAEGMKCDLCSAGFFGLPDKP---CQSCDCNSTGTVTSTTCKNDVHGQCVCKTGVDGRQCDTCRKQYADFGPSGCRQC-PLCTRKLQRHADEVASKLENVQVDMNLTKQLSTLQKELHQTENYLQTVQLEGVMFENRILRGQRDYNSLHDNKLITWNDRLSKLIN-------QINEVTSR--------AIGMKPSALSIQQNMEIYYIAAKAASQKTSEAQEIARDVFF--SHLMNL----TSLASDVVKKGYTYVQDVPTFKF-----------EFYQQTIDD-----------------DLTASNTLLGNVTSIGKEVQYQATVASAYLGALAQSEAYFQTKERIWAASMASFLMEIENVHKKGDDVKLLLDQTKEHVDAQRDFISSIQN----------ESQAVDLLLKDN---MKLYKLTHGLYEHAFQSTVKIVGGVEVMFLEYNPQNKI 3320
CDC+G+ D + +TG +C CL NT G CERC F D TA C C CH +HS C + G+C +C+ N G C++C +Y G+D S C PC C AGS + G G++ C R + D G+C C + G KC+ C+DG + + GC++C C L G T R ++ G C CK+ R C C GY + + C CDCD+ G+ C + TG C C+ ++ +C E +G + + S L + ++ D + T +T+ D + + L R + E L F+G + +G + F+ G +F ++K G + Q++ + NG++ E+ +A+ F + SE + SV ++ + + S L + + E G +P + S + C C PG G C C+PG++ G D+ P C C CN +S+ C + GKCL+C NT GDHC++C +YG DC C C H+ P TC G RC+ +CL EG C+ CS+ ++G P P CQ CDCN G+V + GQCVC+ G G +CD C ++ + C C C L DE+ + + +NLT + L EN + +Q E ++ EN Q+D + + D L K + ++N T R AI ++ +SI + ME KT+ Q + D S L N+ TSL + + +T + T + E YQ+ +++ +L A+ L+ + +E + + +A L + + + Q ++ + + + I+ + D V+ L+ ++H D + + I++ + AVDL+ + + +L LY + ++ YN Q+ I
Sbjct: 849 CDCSGNVDPSEAGHCDSVTG--ECLKCLGNTDGAHCERCADGF-------------YGDAVTAKNCRACECHVKGSHSAVCHLET------------------GLC-DCKPNVTGQQCDQCLHGYY---GLD--SGHGCRPCNCSVAGSVSDGCTDEGQCHCVPGVAGKRCDRCAHGFYAYQDGSCTPCDCPHTQNTCDPETGECVCPPHTQGVKCEECEDGHWGYDAEV--GCQACNCSLVGSTHHRCDV----VTGHCQCKSKFGGRACDQCSLGYRDFPD-----CVPCDCDLRGTSGDACNLEQGLCGCVEETGACPCKENVFGPQCNECREGTFALRADNPLGCSPCFCSGLSHLCSELEDYVRTPVTLGSDQPLLRVVSQSNLRGTTEGVYYQAPDFLLDAATVRQHIRAEPFYWRLPQQFQGDQLMAYGGKLKYSVAFY-------SLDGVGTSNFEPQVLIKGGRIRKQVIYMDAPAPENGVRQEQEVAMRENFWKYFNSVSEKPVTREDFMSVLSDIEYILIKASYGQGLQQSRISDISMEVGRKAEKLHPEEEVAS----LLENCVCPPGTVGFSCQDCAPGYHRGKLPA-------GSDRGPRPLVAPCV-----------PCSCNNHSDTCDPNTGKCLNCGDNTAGDHCDVCTSGYYGKVTGSASDCALCACPHSP-----------------PASFSPTC----------VLEGDHDFRCD---------------ACLLGYEGKHCERCSSSYYGNPQTPGGSCQKCDCNPHGSVHGDC--DRTSGQCVCRLGASGLRCDECEPRHI-LMETDCVSCDDECVGVLLNDLDEIGDAV----LSLNLTGIIPVPYGILSNLENTTKYLQ-ESLLKENM----QKDLGKIKLEGVAEETDNLQKKLTRMLASTQKVNRATERIFKESQDLAIAIERLQMSITEIME-----------KTTLNQTLDEDFLLPNSTLQNMQQNGTSLLEIMQIRDFTQLHQNATLELKAAEDLLSQIQENYQKPLEELEVLKEAASHVLSKHNNELKAAEALVREAEAKMQESNHLLLMVNANLREFSDKKLHVQEEQNLTSELIVQGRGLIDAAAAQTDAVQDALEHLEDHQDKLLLWSAKIRHHIDDLVMHMSQRNAVDLVYRAEDHAAEFQRLADVLYSGLENIRNVSLNATSAAYVHYNIQSLI 1913 HSP 3 Score: 115.546 bits (288), Expect = 5.354e-25 Identity = 103/331 (31.12%), Postives = 142/331 (42.90%), Query Frame = 3
Query: 1515 CLAGAFSMTVKFEDGALPCNCNPIGSINST----CNKVAGQCF-CKPGVTGRDCSRCSPGFYN--FTSHGCQACGC--KGV-DKICNPQTGECNCPENFQGRVCDAC--------------QCN-----GNSNKCQRDGKCLDCQSNTFGDHCEMCKPSFYGDALQGDCKACGC-HAEGAINTTCHMITGQCFCRPGVIGKTCSQCDINHYDL-TDTGCKSCRCNEHGSALLQCNNA-GVCSCLSSAEGMKCDLCSAGFFGLPDKPCQSCDCNSTGTVTST--------TCKNDVHGQCVCKTGVDGRQCDTCRKQYADF---GPSGCRQC 2378
C G + + +PC+C+ G+++ + C+ V G+C C G C RC+ GFY T+ C+AC C KG +C+ +TG C+C N G+ CD C CN S+ C +G+C C G C+ C FY G C C C H + TC TG+C C P G C +C+ H+ + GC++C C+ GS +C+ G C C S G CD CS G+ PD C CDC+ GT C + G C CK V G QC+ CR+ P GC C
Sbjct: 831 CADGYYGNPTVPGESCVPCDCS--GNVDPSEAGHCDSVTGECLKCLGNTDGAHCERCADGFYGDAVTAKNCRACECHVKGSHSAVCHLETGLCDCKPNVTGQQCDQCLHGYYGLDSGHGCRPCNCSVAGSVSDGCTDEGQC-HCVPGVAGKRCDRCAHGFYA-YQDGSCTPCDCPHTQ----NTCDPETGECVCPPHTQGVKCEECEDGHWGYDAEVGCQACNCSLVGSTHHRCDVVTGHCQCKSKFGGRACDQCSLGYRDFPD--CVPCDCDLRGTSGDACNLEQGLCGCVEET-GACPCKENVFGPQCNECREGTFALRADNPLGCSPC 1150 HSP 4 Score: 109.383 bits (272), Expect = 4.060e-23 Identity = 151/603 (25.04%), Postives = 256/603 (42.45%), Query Frame = 1
Query: 6262 FKTTDMNGLLLY-------KPGNGIMAHV---YMSILSGNLVVLVHLSD---IRTPFMTTNL-TLSDGRWHNASIAYTKNGYQIHVDNKMLYEGWLGNNVNT-MFGTGMLYVGGVPSQMPLAREMPIRRSLQIDFDSFLVNLIEQDFTKAF--------TSGVS-YAGITP-GHDSAVAPSSCAASFPYLMYQPDPLQVRFGRAPWSGFQSYIGYRLP--AAVVRKYFNSSFVITMSFRAMVGNGVIFYIANSEINPTQYISLELVKGQLKYEFSNGKGKVSISSANGTNYADNGKWYKVYLLRIYQFGAMLIPETMEYRNSRHSEPTVP-------LSLSTPLYIGGLPNYVNAPSLTQRKYGYNGCLRKFEISSGFDTHALDFTSPDLGGTSTGTSACYSNTEHGVFFNGKDSWIHYANNFELQTDFTLQVKFRTYKRDGPLLYLFSTSSGSSTLNQFGTMVLLELDDGSINFHYKANNLERAQTFTWTHPSSDERHYLCDQKWHRVKIEKSGPTLNIIVDDVMTYGGGNVNPMNRGV---INGMMFVGGTKSGISIPS--TTKNFEGCV-ELEMLGTPDTT---FQRSVDGNNV-VFACP 7938
F TT+ +G++L K G+ AHV + ++ GN+ V V+ D +R + T SDG+ H+ S+ + + +D E LG V + LYVGG+P + + +RRS + + NL DF A T +S + P DS + P +FP L+ G A G + LP + VRK + + +S R +G+I+Y+A+ N Y L+L G+L + F GKG+ +S +GKW+ V + + G + T++ R S P V L + Y+GGLP+ A + + C+ ++S LD SP T + CY+ + G +F+G +++Q+D + ++FRT ++G LL + ++ ++ G LEL DG + FH NN T + ++ LCD KWH ++ KS + +IVD G +P + N ++VGG +G+ + +F GC+ +L ++ +P F R+ + + V + +CP
Sbjct: 2514 FATTNSSGIILAALGGDVEKRGDREEAHVPFFSVMLIGGNIEVHVNPGDGTGLRKALLHAPTGTCSDGQAHSISLVRNRRIITVQLDENNPVEMKLGTLVESRTINVSNLYVGGIPEGEGTSL-LTMRRSFHGCIKNLIFNLELLDFNSAVGHEQVDLDTCWLSERPKLAPDAEDSKLLPE--PRAFPEQCVVDAALEYVPG-AHQFGLTQNSHFILPFNQSAVRKKLS----VELSIRTFASSGLIYYMAHQ--NQADYAVLQLHGGRLHFMFDLGKGRTKVSHPA---LLSDGKWHTVKTDYVKRKGFI----TVDGRES----PMVTVVGDGTMLDVEGLFYLGGLPSQYQARKIGNITHSIPACIGDVTVNS----KQLDKDSPVSAFT---VNRCYAVAQEGTYFDGSGYAALVKEGYKVQSDVNITLEFRTSSQNGVLLGI-----STAKVDAIG----LELVDGKVLFH--VNNGAGRITAAYEPKTAT---VLCDGKWHTLQANKSKHRITLIVDGNAV---GAESPHTQSTSVDTNNPIYVGGYPAGVKQKCLRSQTSFRGCLRKLALIKSPQVQSFDFSRAFELHGVFLHSCP 3071 The following BLAST results are available for this feature:
BLAST of TCONS_00046696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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