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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046688 ID=TCONS_00046688|Name=TCONS_00046688|organism=Clytia hemisphaerica|type=transcript|length=1821bp
ATCGTAAAATTGAATTTATTATAACGAGCACTGTTAATTGTTAATTTTTG
CCAGCGAGAACAGTTTCAAAGATAAAGGCTAACAGGTTTAAGTTGGATTA
CCTTGGCTACTTTATATGGTGTAGGACTGATAAGCAGCTTATTGCAAAGA
CGATAGAGAGCAATCATTATCCAAATAAGGTTTCGGCTGATTTTAATCTG
TTCTCCTGCACTGTGTGGTTTGGTGAAGTATTTTGTAACCCGTACTAAGG
AGTTCGTGTGGAGTTTAAACTATTCCAAAAGGAAATACTTGCACTGTTTA
GACGCACTGcgtttgtaaaaaaataacgaaatttctttaaaaggttGATT
AATAATTTTGTTTCTGTATGACATTTATTCAGTAGAAGAAAATGTTGGCA
ACACTATCGATCAGTAAGGAATACCACCACACAACTACAACCAACAACAC
TTACAACCTTGGCGACACTATGAGCGATGACCCCAACAATAACAACCACT
TGATAAGAACTGACAGTAAAgttggaaaattggtcaaaggAAAATTGTTG
AGGTACGCAAGAAGAAGGAGATTGCTTTGTAAAAACGGGATGTATTTGGC
AATTGATAAAAACGGCGTCCATGGCACCAAAGATCCAAATAATCCTTACG
CCGAAATACAGGTCCTGTCTATCGGTTCCGATATGTTGGCTTTGTGGGGT
ACGCGAGCTGGATTATACCTAGCAGTCGACACAGAGACAGGCAAAATATA
TACAACGTCAGAGGAAGGAAAACATTGTGTTTTTATTGAGACATTCACGA
AGGATTTTAACAATATATTCGAAAGTTATAAATCAGTTTATGATAACCAA
GCTAAATATATCGCATTAAACTCACAAAATAAATTGGCAATGACAGATCA
CAATGAAGCAAAGCCAGATAGGAATGGAAAGTTTATTTGGGAATTGGTAG
ATAAATAGACGTTATAATTACAGGGAAAAGAGATCAGATGGATGAAATCG
AAAAGcgaattttggggaaaattgaGACTCCAAGGTAAATACTACCTACC
GGTGGATCTAAAAGGATAAAGCATATTCTGCAATGCCACCTGTTGCAGAA
ATTATGTGGTTGTGAAGAAAtggactttttttttaaaacaatcatATGCA
AAGGTTTTAAAGCATCTTCTGGAAAAGACCAATAAAACCTTCATCGGCAA
AATATCAATGATGAAGTTAACGTgtaaatattgtaaatttttattatatt
tatggtattaaaacttaaaagggtgtaaagtaaaaataaatcataatgTT
TTATTTCAGTGTTGGGTTGGTCTTTACTAGacaatttcttttataagaat
ggtgtttttcatttgatcatggatattcttagcattttggggaaaattgt
cttaaaatattcttatagtaTATGTATTCTAATGTTAGGGTCGAAATTCT
ATCTAaatttaacatgtaatacaCACACAGATGAAGCATAAATTGGCATA
TTTTGTGACGAGCCTTACTGGGGATAATTGACAGTTTGCACTTAAAAATG
CTCTACAAAAGGCTTTCCTAGGTTCTGTTGCCAATATTTCCATGATAgtg
atattcttatttttagccaattttatcatgaatattcgtataaagtatat
tcttatcaAAATAAGCGTGTATTCACATGGGGATAGATAGGGTATCATGG
CAGCGATGCACTTTTAAACTATTTTATAATAGTTTTTGACACTCAAATAC
TTATTTAAAATGATACAAAGGGTTCAGGCAAGAATGAATAAATGTAAGCG
AATTCTTCTATGCAGTGTCAG Run BLAST on NCBI transcript from alignment at scaffold_116:23048..25059- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046688 ID=TCONS_00046688|Name=TCONS_00046688|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at scaffold_116:23048..25059- (Clytia hemisphaerica)
ATCGTAAAATTGAATTTATTATAACGAGCACTGTTAATTGTTAATTTTTG
CCAGCGAGAACAGTTTCAAAGATAAAGGCTAACAGGTTTAAGTTGGATTA
CCTTGGCTACTTTATATGGTGTAGGACTGATAAGCAGCTTATTGCAAAGA
CGATAGAGAGCAATCATTATCCAAATAAGGTTTCGGCTGATTTTAATCTG
TTCTCCTGCACTGTGTGGTTTGGTGAAGTATTTTGTAACCCGTACTAAGG
AGTTCGTGTGGAGTTTAAACTATTCCAAAAGGAAATACTTGCACTGTTTA
GACGCACTGCGTTTGTAAAAAAATAACGAAATTTCTTTAAAAGGTTGATT
AATAATTTTGTTTCTGTATGACATTTATTCAGTAGAAGAAAATGTTGGCA
ACACTATCGATCAGTAAGGAATACCACCACACAACTACAACCAACAACAC
TTACAACCTTGGCGACACTATGAGCGATGACCCCAACAATAACAACCACT
TGATAAGAACTGACAGTAAAGTTGGAAAATTGGTCAAAGGAAAATTGTTG
AGGTACGCAAGAAGAAGGAGATTGCTTTGTAAAAACGGTGAGTTTTTTTA
TTCGATAATTCAAACATCCAGAAGAAATTCTCAGTCCTTTTAAAGTTTTG
CAAGGTCTTCGTAACACCCGACAAAAGAAAAGTCAGCTTTCTGTTGTCTC
TCTATCGGTCACAATAAAAGGGTCAGCAGGATCTTCCTGAGAGTCCAAAA
AATGAGAAATATTAATCTCGATTTATAGGGATGTATTTGGCAATTGATAA
AAACGGCGTCCATGGCACCAAAGATCCAAATAATCCTTACGCCGAAATAC
AGGTCCTGTCTATCGGTTCCGATATGTTGGCTTTGTGGGGTACGCGAGCT
GGATTATACCTAGCAGTCGACACAGAGACAGGCAAAATATATACAACGTC
AGAGGAAGGAAAACATTGTGTTTTTATTGAGACATTCACGAAGGATTTTA
ACAATATATTCGAAAGTTATAAATCAGTTTATGATAACCAAGCTAAATAT
ATCGCATTAAACTCACAAAATAAATTGGCAATGACAGATCACAATGAAGC
AAAGCCAGATAGGAATGGAAAGTTTATTTGGGAATTGGTAGATAAATAGA
CGTTATAATTACAGGGAAAAGAGATCAGATGGATGAAATCGAAAAGCGAA
TTTTGGGGAAAATTGAGACTCCAAGGTAAATACTACCTACCGGTGGATCT
AAAAGGATAAAGCATATTCTGCAATGCCACCTGTTGCAGAAATTATGTGG
TTGTGAAGAAATGGACTTTTTTTTTAAAACAATCATATGCAAAGGTTTTA
AAGCATCTTCTGGAAAAGACCAATAAAACCTTCATCGGCAAAATATCAAT
GATGAAGTTAACGTGTAAATATTGTAAATTTTTATTATATTTATGGTATT
AAAACTTAAAAGGGTGTAAAGTAAAAATAAATCATAATGTTTTATTTCAG
TGTTGGGTTGGTCTTTACTAGACAATTTCTTTTATAAGAATGGTGTTTTT
CATTTGATCATGGATATTCTTAGCATTTTGGGGAAAATTGTCTTAAAATA
TTCTTATAGTATATGTATTCTAATGTTAGGGTCGAAATTCTATCTAAATT
TAACATGTAATACACACACAGATGAAGCATAAATTGGCATATTTTGTGAC
GAGCCTTACTGGGGATAATTGACAGTTTGCACTTAAAAATGCTCTACAAA
AGGCTTTCCTAGGTTCTGTTGCCAATATTTCCATGATAGTGATATTCTTA
TTTTTAGCCAATTTTATCATGAATATTCGTATAAAGTATATTCTTATCAA
AATAAGCGTGTATTCACATGGGGATAGATAGGGTATCATGGCAGCGATGC
ACTTTTAAACTATTTTATAATAGTTTTTGACACTCAAATACTTATTTAAA
ATGATACAAAGGGTTCAGGCAAGAATGAATAAATGTAAGCGAATTCTTCT
ATGCAGTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046688-exon-scaffold_116-1575043694:24473..25059 | TCONS_00046688-exon-scaffold_116-1575043694:24473..25059 | Clytia hemisphaerica | exon |
| TCONS_00046688-exon-scaffold_116-1575043694:23048..24281 | TCONS_00046688-exon-scaffold_116-1575043694:23048..24281 | Clytia hemisphaerica | exon |
| TCONS_00046688-exon-scaffold_116-1510915933:24473..25059 | TCONS_00046688-exon-scaffold_116-1510915933:24473..25059 | Clytia hemisphaerica | exon |
| TCONS_00046688-exon-scaffold_116-1510915933:23048..24281 | TCONS_00046688-exon-scaffold_116-1510915933:23048..24281 | Clytia hemisphaerica | exon |
| TCONS_00046688-exon-scaffold_116-1491911889:24473..25059 | TCONS_00046688-exon-scaffold_116-1491911889:24473..25059 | Clytia hemisphaerica | exon |
| TCONS_00046688-exon-scaffold_116-1491911889:23048..24281 | TCONS_00046688-exon-scaffold_116-1491911889:23048..24281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:23048..25059 - |
Blast
The following BLAST results are available for this feature:
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