|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046682 ID=TCONS_00046682|Name=TCONS_00046682|organism=Clytia hemisphaerica|type=transcript|length=4993bpRun BLAST on NCBI transcript from alignment at scaffold_116:869299..885123+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046682 ID=TCONS_00046682|Name=TCONS_00046682|organism=Clytia hemisphaerica|type=transcript|length=15825bp|location=Sequence derived from alignment at scaffold_116:869299..885123+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046682 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 8.422e-44 Identity = 123/363 (33.88%), Postives = 165/363 (45.45%), Query Frame = 2
Query: 2342 VDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCDTQ-----GAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSSCCPTNATWVDVMNITSCSAECGEGNWTWEQVCTN-ASCNGADLFCDGYAPGKLRNVTKNCTTWLDPVRKSCRLHGGWKVVNETECSCASNQTKVVTRECIDPVPQGGGNWC 3409
V G +S W W CS TCG G+Q R R C P P N GK C G+ E+R+C +K C G+WS WS W+EC+ SC G +R R C+ G C +G++ + + CN+ PC G W +W P CS +CG T+ R+R+C+NP P GS+C D E++ C CP HG W +W CSV CG G + R R C++P P+ G KC + + S CPT+ W +CS C G + C N NG G A G + + C T + PV S G W ++ SC + K R C PVP GG C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC---EGNA----VEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC-------------DGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD-------VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNG------GRACGGPDSQIQRCNTDMCPVDGSW---GSWHSWSQCSASCGGGE-KTRKRLCDHPVPVKGGRPC 4853 HSP 2 Score: 170.629 bits (431), Expect = 4.645e-42 Identity = 105/289 (36.33%), Postives = 141/289 (48.79%), Query Frame = 2
Query: 2330 CPESVDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCDTQ-----GAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSS-CCPTNATWVDVMNITSCSAECGEGNWTWEQVC 3175
CP VDG WS W W +C+ +CG G QTR R+C P ++ G+ C GN E+ CN + C G WSAW PW CS SC GT +R R+C+ G+ C DG+ E Q CN C G W +W ACS +CG + R+R C +P P+ G C+ + + C CPTHGNW+ W GTCS C G RYR C+NP P N G C +S+ C++ CP + +W + + CSA CG G T +++C
Sbjct: 4583 CP--VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC---DGA----ETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-------------DVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGP--------DSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841 HSP 3 Score: 117.472 bits (293), Expect = 5.305e-26 Identity = 110/375 (29.33%), Postives = 156/375 (41.60%), Query Frame = 2
Query: 2507 CQAFGTWSAWSPWQECSVSCNNGTTSRERVCDTQ-----GAVCLLLDGSSGIKEAQKMDCNMEPCDRDGGWGSWGPHQACSATCGTATKVRSRICDNPQPRQNGSFCKLDVPLENGIHVYDLVESEKTACTLPVCPTHGNWNSWVE-GTCSVVCGNGTKLRYRECNNPAPKNFGLKCANATGLNQTLYESENLTCSSCCPTNATWVDVMNITSCSAECGEGNWTWEQVCTNA-------SCNGADL---FCDGYAPGKLRNVTKNCTTWLDPVRKSCRLHG------GWKVVNETECSCASNQTKVVTRECIDPVPQGGGNWCENIDGTGNNDTEIFTKSCVSE-CHINGSWSGWVNTTICT-SCGISNTTXWKL 3559
Q G +S WS W+ CSV+C G R R+C+ G C GS + + +C +PC DG W W + C+ +CG + R+R C+NP + G C+ N + E C + CP HG W++W GTCS CG GT+ R R CNNP P G C A Q E CP + W + ++CS CG G + C++ C G+D+ FC+ DP C HG GW + T C Q + R C +P P GG C G D++I + C ++ C ++GSW W + + C+ SCG T +L
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPC---QGS----DLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE-----GNAV--------EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERN-------CPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-----------------DP----CPTHGNWSPWSGWGTCSRT---CNGGQMRRY-RTCDNPPPSNGGRAC------GGPDSQI--QRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRL 4840 HSP 4 Score: 114.005 bits (284), Expect = 5.674e-25 Identity = 94/314 (29.94%), Postives = 128/314 (40.76%), Query Frame = 3
Query: 3525 RVV*VIQPNGSWSGWVNTTICTSCGISDTTGVLNRTRYCNNPSALGNGTNCTDTERNVINQYYDYMYNVPCDDSSCPIPGNWSIWYN-SSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLNGGLGLNDTDSVSCGLPCCQQDAKWGXXXXXXXXXXTVPCGDGHRTRNRTCLQSECPNANVECPLYFSVFALNQTEVGNCTEDCVVRDGNWTNWTDWSNCSVACGGNGTSMRTRNC--TGIENGGKEC 4457
RV ++Q +G +S W + +C ++ G+ R+R CN P G C ++ + N C + CP+ G+WS W C SC G T R CN+ + + G CE E + CN PCP G W+ W W C +CGK +TR+R C NPPP GG C +G +T C C KW + S +V CG G R R R C +C + + C D GNW+ W+ W CS C G G R R C NGG+ C
Sbjct: 4521 RVPVIVQVHGGFSQW---SAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRN----------CQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEI-------IMCNIRPCPVHGAWSAWQPWGTCSESCGKG-TQTRARLCNNPPPAFGGSYC---DGA----ETQMQVCNERNCPIHGKWA--TWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC-------EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNG-GQMRRYRTCDNPPPSNGGRAC 4796 HSP 5 Score: 113.62 bits (283), Expect = 8.010e-25 Identity = 83/232 (35.78%), Postives = 108/232 (46.55%), Query Frame = 3
Query: 3549 NGSWSGWVNTTICT-SCGISDTTGVLNRTRYCNNPSALGNGTNC--TDTERNVINQYYDYMYNVPCDDSSCPIPGNWSIWYN-SSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLNGGLGLNDTDSVSCGLPCCQQDAKWGXXXXXXXXXXTVPCGDGHRTRNRTC 4232
+G+WS W C+ SCG G R R CNNP G+ C +T+ V C++ +CPI G W+ W + S+C SC G R C+D P G KCE + D CN+ PCP GNW+ W+ W C TC + + R R C NPPP NGG AC G D+ C C D WG+W +WS C+ + CG G +TR R C
Sbjct: 4643 HGAWSAWQPWGTCSESCG----KGTQTRARLCNNPPPAFGGSYCDGAETQMQV------------CNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-------CNSDPCPTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRAC-------GGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSAS--CGGGEKTRKRLC 4841 HSP 6 Score: 112.464 bits (280), Expect = 1.765e-24 Identity = 96/295 (32.54%), Postives = 121/295 (41.02%), Query Frame = 3
Query: 3549 NGSWSGWVNTTICT-SCGISDTTGVLNRTRYCNNPSALGNGTNCTDTERNVINQYYDYMYNVPCDDSSCPIPGNWSIWYN-SSCDASCDTGYLTMERFCNDSAPVNNGDKCETEGGERDLYESKRVTCNTHPCPQSGNWTEWTAWTVCDGTCGKDKNKTRSRECTNPPPENGGGACLKLNGGLGLNDTDSVSCGLPCCQQDAKWGXXXXXXXXXXTVPCGDGHRTRNRTCLQSECPNANVECPLYFSVFALNQTEVGNCTEDCVVRDGNWTNWTDWSNCSVACGGNGTSMRTRNC 4427
+GSWS W CT SCG + T RTR CNNPS G C +I C+ CP+ G WS W +C SC G T R CN+ P G C D E++ CN CP G W W +W+ C +CG + R+R C++P P+ GG C +D S C C W WS W C+ T C G R RTC N C +++ C D DG+W +W WS CS +CGG G R R C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQT----RTRTCNNPSVQHGGRPCEGNAVEIIM----------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC-------DGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGA-RQRTRGCSDPVPQYGGRKCEG-------SDVQSDFCNSDPCPTHGNWSPWSGWGTCSRT--CNGGQMRRYRTCDNPPPSNGGRAC-------GGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGG-GEKTRKRLC 4841 HSP 7 Score: 88.1965 bits (217), Expect = 4.416e-17 Identity = 57/161 (35.40%), Postives = 74/161 (45.96%), Query Frame = 2
Query: 1262 GQWAQWSGFTTCQFQGVACGWGKQNKSRSCSDPAPA-GGAQCLKVDGSMRGMDETVESDCYVACPDNVVDGGWGSWNILTNCSKECNAGMQTVKRECNFPSPSINGAHCQMENGSMGMVEMKDVPCNTQPCEPLDTFESWGPWSPCTKTCGFGEMTRTRQC 1741
G ++QWS + C V CG G Q +SR C+ P PA GG C D MR CP VDG W W++ C++ C G QT R CN PS G C+ + M CN +PC + +W PW C+++CG G TR R C
Sbjct: 4530 GGFSQWSAWRAC---SVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-------PCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC 4670 HSP 8 Score: 85.5001 bits (210), Expect = 3.075e-16 Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 2
Query: 2330 CPESVDGYWSTWEDWGKCSETCGDGLQTRKRSCTFPYPRNEGKTCAGNPTEVRSCNDKACQAFGTWSAWSPWQECSVSCNNGTTSRERVCD 2602
CP G WS W WG CS TC G R R+C P P N G+ C G ++++ CN C G+W +W W +CS SC G +R+R+CD
Sbjct: 4754 CP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCD 4842 The following BLAST results are available for this feature:
BLAST of TCONS_00046682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.