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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046636 ID=TCONS_00046636|Name=TCONS_00046636|organism=Clytia hemisphaerica|type=transcript|length=7575bpRun BLAST on NCBI transcript from alignment at scaffold_116:66170..108230+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046636 ID=TCONS_00046636|Name=TCONS_00046636|organism=Clytia hemisphaerica|type=transcript|length=42061bp|location=Sequence derived from alignment at scaffold_116:66170..108230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046636 vs. Swiss-Prot (Human)
Match: DMXL2 (DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2) HSP 1 Score: 459.144 bits (1180), Expect = 7.587e-130 Identity = 368/1197 (30.74%), Postives = 587/1197 (49.04%), Query Frame = 1
Query: 4072 LPGLSSQEQMYLLALSDTIAS-SKDLDIERIEGSDIKKYRTEXXXXXXXXXXXXXXXXXXXXXXXVGDFASDSVDECGLRFLILLRHHTTVLKSVSPKQRATLEQMGMLPSEYCWAFHSDCTEELIAMLPGMKRNEPSWMDLRSHGAGWWIRSNDVLKRTIEKVAKTHFQMNKDPLDSAIFYLAMKKKSLICALFRSLRDTKMSAFFSNDFTQERWRKAALKNAYALLGKQRFEHAAAFFILGSAIWDAVQVCVTRLHDIQLALVIARLHENNMD--ETHQRVLKTYVLGYEDEPP-------NKDPFKRSMAHWLLKDYRESVDVFLFTFQENLHSLEDNSPDEFDY---------PSVFNFYTYLKTHPLLRRRHLTQHRSTSSSITRHEXXXXXXXXXXXXTGENVYTLQRSLCFHTACIHLNSGLPDIALEVLSMLPADEKTLEDENVSSELPLSSANEENMIVTGTFSGDFEEQSTATTAVSNLNSTSNGHYSS-----------------SAFGSGWGDDYGMTSTNRFADLDDGYKIGIXXXXXXXXXXNEVVKNDGGMDNDVTIEEAASEQQ-----KETGDKNKGSTNDIAALNLKFRCIIQLLIEGLKALPSXXXXXXXXXXXXXXNMVQKELEYLHFICDYDRGIDLGGDSTTNESLNDTATFGS--SDNEIGSGKSYRSFSSISNTSMDVTQEEASLTQKVEQISVQSEWLKQNQKILASLYEHCLMVGTRDPXXXXXXXXXXXXXXXXXDHRVLNAPLTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXQSMAHDLLQTVIDLPKLPTPNNPVKRLADLESLMCSLSSCIYHSLCGGDDDRLLTSIHKGETQLVGKQMKDGKLCRIPHGASNVEIE----VTSSPSKWPGVKFFLSILSANKKDERNVLNLLLCEAAVAVYLSFFVSACSRLSCXXXXXXXXXXXXEEMWNHVFGGGTKVVI-PAPEALNARSSPILEKRNSAKDTARMKWNYKLL--GKQSSGIQQSRV-AERDQVTNNNDDQKLVRHELYIPPKLSLCDYFLKKPKKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLI---DEKILQQRIEEKRKKRTKLFEHFDSSSYPWLIMQLALVEITIKNINDFISLAGFELSDLPTQSTLLYNATKILIRWEQLLVASLDSYH-VEENLIDAY 7497
LPGL+ EQM+L+AL+DT+A+ S +LD R + D++DECGLR+L+ +R HT +L S+ P R L G+ + WAFHS+ EELI M+P ++R +P W +LR+ G GWW+R+ + L+R IEKVAK FQ N D LD+A+FYL+MKKK+++ LFRS D KM+ FFS++F ++RWRKAALKNA++LLGKQRFE +AAFF+L ++ DA++VC+ ++ DIQLA+VIARL+E+ + T+ +L +LG + + + DPF RS+A+W++KDY ++D L + +P E D P F+FY YL+THPLL RR+L T +++ + + + ++R L F TA H G P +ALEVLS +P KT LS+ ++ + S ++ + + A+S+ N +S +S+ WG+D+ + D ++ +G+ V+K+ + D ++ AS+ +E D + D+ A LKFR +++L+ L+ L + ++ KLR L N ++KE+ LH IC+++ I T ++ +D +IGS + ++ E L K E + WL++NQ +L +C + G + L +V +EL LL E + + + + + + P L + S+ +++++PV +L + HD+L T++ + P P+ ++ L SL SLS+ IY +LC D S +G Q G + G L IE SSP++WPGV +++LS+ + +++ LN+LLCEA VAVYLS + A + S + L+R + LN MW VFGGG K+V+ P ++ N + P+L + D R ++N ++L G+ V AER E +IPP+LS+ DYF+ KP + D G+I DE I ++ T++ EH D +SY W ++ L +V++ + N+ +F +AG E S+LP S L K L WEQ+L +D + N I+ Y
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCS----------------------------------GRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNINTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESEFETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTLL-----------EQTPKEDDEHQVIIKSCNPVAFSFYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNFV---------DKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKTSA---------LSAKKDQPDFI----SHRMDDVPSHSKALSDGNGSSGIEWSNVTSSQYDWSQPIVKVDEEPLNLDWGEDH-----DSALDEEEDDAVGL------------VMKSTDAREKDKQSDQKASDPNMLLTPQEEDDPEGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAALHEICNHESVIKEYSSKTYSKVESDLLDQEEMVDKPDIGSYERHQI-------------ERRRLQAKREHAERRKSWLQKNQDLLRVFLSYCSLHGAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTPPHPSIEDVKVHTLHSLAASLSASIYQALC----DSHSYSQTEG-NQFTGMAYQ-GLLLSDRRRLRTESIEEHATPNSSPAQWPGVSSLINLLSSAQDEDQPKLNILLCEAVVAVYLSLLIHALATNSSSELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSENISAPPVLSED---IDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYK-----------EKFIPPELSMWDYFVAKP---------------------------FLPLSDSGVIYDSDESIHSDEEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNVKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDQFEGPPPNYINTY 2575 HSP 2 Score: 373.244 bits (957), Expect = 1.593e-103 Identity = 333/1231 (27.05%), Postives = 524/1231 (42.57%), Query Frame = 2
Query: 92 MRLHQVLTGAANVLENSVAVSRGNASGLPFTVYGSGYEVVVLDSHFNRVQILSPQDASITSIVKCISCGTLEGKVAVSYGKKVILYAPQLDN--KAVFKLPFRWRKVAVLDFEEDVSKICWDEESGRLLIGSNVLSMWRKVSH------------VDDKEDEWSCVWKRRLATTVNLLEMSPDGHFFASSGQADCMIKIWFRAPRVSSHTQPPDSNIDHFEE---EYNFIYIMHPKPVQSFSWRQTSKHMPLCMVPNVLLTSCADHVCRVWTET-------------------VKYKPSH--HNNDKKQGNI-------NLRKDRAESDLKQQTTNHLRLDEKIH-AQQH--YHLVSMYHFHLAAVINPITDI--ALLSTIPTQSIFGRSFQLQWLNNKEVAFTTAVEAIFASIRDHKAXXXXXXXXXXXXDPFLMVDEIDGNMEFSDHHDTTVSDVKTLDQTLDED-----QMEITT------DGEASSKAGLSLKLPDLSPLQETTSDATFSAYHNELNNLVHDWCTSSDTLYCIHPVDGSLLIWVVDFIDDFTSAYYRQVQVSFASRIPATFSKADATSL--------CWTNTYHYTQAQLNPSNYDIEDNLESIQKTKNLKKTDKLAVLQSSYMVSAHADGSLNLWLVTFSDSGSFTGIASITHVTRSCGPRFGTTQLVVHPSLPLVI----------------------------------GTSQRTLRK-GDRIESITNDIESELILWNTTHVSPLSEFKGVTEMARISSSNPDKFLSLSWIPEMFHFSLLSITNDGIDLLPNVPSACFIAATDKGLQLYQILLDAKTLLSNLGVLKFSASLPHHMQILSDL--IESEQSGSQSACIMNVCQLDDSTDIKNIHFLHVFDKQSICKQTLNGDCLRNK-----LNTSQTLQQG--KQEFYVLTIYNEYGINQKIAVWKI-------SISYDEKYASPLSPASVDGDFXXXXXXASTFSINH----------------CVSQERIYHQDMMTXXXXXXFTHLTATADLHSSNDFCSSLPVKYHFVGISSETIQFWELNLDENETLSVQPTDHIDTKLSW----DED------------IVCLSCATSSRLAYISRKPISSGG-GNKDYYLH--IKESETSGEEQWNTEF---------------------SQLFY---------------PNVEDSNAVKLSWLSLENGQFLLAVAIN 3211
M LHQVLTGA N +N +V G+ +PFT YGSG ++V+L + F VQI+ P V C+ C +G++A SYG V ++ P N K +L +W K + WD + RLL ++ + +W V ++W CVW+ + + +V+L+E SPDG +FA++G+ DC++K+W+ S P D + + +++F+Y+ HP+ V FSWR+TSK+MP V NVLLTSC D VCR+W ET + SH + D+ Q + NLRK + S + + +H Q+H +H ++ HFH+AA INP TDI L+ T F + WLNNKE FT++ E +R VD + + + D + + L LD D + E T DGE +L PL D ++ L+ +W + D L+ IHPVDG+ L+W V ++D++ +RQVQVSF+SRIP F DA+SL C T L+ + S Q T + + M+S H DGSLN W VTF+D +FT + +++H R CG RF L H LPL++ G+S++ LR R N I SELILW + PLS GV+E+ARI+S + F +++W+P + I + + N SACF+A+ K L+LYQ ++DA+ LL L S P +++ ++ I S+QS ++ CI+ + + + N LHVF + I + + + K SQ + ++F+++ I + N + +W + ++ + AS S SV G + S P ++ S++ +S +Y Q + +S + + L SS+ + L S ++FW+ ++ N + I W DE V +SC+ + RLA ++PI G +K++ +H I E E++G +W E S LF PN++ + V L W+S E+G +L V +
Sbjct: 1 MHLHQVLTGAVNPGDNCYSV--GSVGDVPFTAYGSGCDIVILANDFECVQII-PGAKHGNIQVSCVECSNQQGRIAASYGNAVCIFEPLGINSHKRNCQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGDDILEEEEEIDNTVPPVLNDWKCVWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDHHEVKRRQSSTQFSFVYLAHPRAVTGFSWRKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSIASSLSHAGRHKDRIQHALETIHHLKNLRKGQRRSSVLVTHAELMPDQTAMHEVQRHISHHANALCHFHIAASINPATDIPNVLVGTAFNVDDGNGGFVVHWLNNKEFHFTSSTEVFMHQLRKLSDK---------------QVDHENDDADREDEEHSQEDRERGLHMKLDHDLSLDRESEAGTGSSEHEDGEREGSPRTYSRLSVPMPLPTVLLD-------RKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDASSLSKNIMMYACINATKDSHHTLLHQEGMSVGSPHGS-QPHSRSHSTHMNILAPTVMMISKHIDGSLNQWAVTFADKSAFTTVLTVSHKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPELDCQWDSDNKLSRLMDPVKHIKGSSKQPLRNAATRTFHDPNAIYSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTL-------IPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARKLLDEL-------SDPESSKLIGEVFNIVSQQSTARPGCIIELDAITNQCG-SNTQLLHVFQEDFIIGYKPHKEDMEKKETEIFFQPSQGYRPPPFSEKFFLVVIEKDSNNNSILHMWHLHLKSVQACLAKASEGASSESLLSVPGQKNVDSSPETSPSVSPMPHSSSIANLQTASKLILSSRLVYSQPLDLPESVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMEANPECNKSDEKEIYHWKRWPLMNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFVSKEFSMHVCIFECESTGGSEWVLEQTIHLDDLVKVGSVLDSRVSVDSNLFVYSKSDALLSKDRYLIPNIK--HLVHLDWVSKEDGSHILTVGVG 1188 The following BLAST results are available for this feature:
BLAST of TCONS_00046636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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