|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046630 ID=TCONS_00046630|Name=TCONS_00046630|organism=Clytia hemisphaerica|type=transcript|length=7119bpRun BLAST on NCBI transcript from alignment at scaffold_116:65546..106733+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046630 ID=TCONS_00046630|Name=TCONS_00046630|organism=Clytia hemisphaerica|type=transcript|length=41188bp|location=Sequence derived from alignment at scaffold_116:65546..106733+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00046630 vs. Swiss-Prot (Human)
Match: DMXL1 (DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3) HSP 1 Score: 446.817 bits (1148), Expect = 3.902e-126 Identity = 384/1414 (27.16%), Postives = 627/1414 (44.34%), Query Frame = 2
Query: 92 MRLHQVLTGAANVLENSVAVSRGNASGLPFTVYGSGYEVVVLDSHFNRVQILSPQDASITSIVKCISCGTLEGKVAVSYGKKVILYAP--QLDNKAVFKLPFRWRKVAVLDFEEDVSKICWDEESGRLLIGSNVLSMWRKVSHVDDKEDE-----------WSCVWKRRLATTVNLLEMSPDGHFFASSGQADCMIKIWFRAPRVSSHTQPPDSNID---HFEEEYNFIYIMHPKPVQSFSWRQTSKHMPLCMVPNVLLTSCADHVCRVWTETVKYKP----------SH-------HNNDKKQGNINLRKDRAESDLK-------------------------QQTTNHLRLDEKIHAQQHYHLVSMYHFHLAAVINPITDIALLSTIPTQSIFGRS-----FQLQWLNNKEVAFTTAVEAIFASIRDHKAXXXXXXXXXXXXDPFLMVDEIDGNMEFSDHHDTTVSDVKTLDQTLDE-DQMEITTDGEASSKAGLSLKLPDLSPLQETTSDATFSAYHNELNNLVHDWCTSSDTLYCIHPVDGSLLIWVVDFIDDFTSAYYRQVQVSFASRIPATFSKADATSLCWTNTYH---------YTQAQLNPSNYDIEDNLESIQKTKNLKKTDKLAVLQSS-YMVSAHADGSLNLWLVTFSDSGSFTGIASITHVTRSCGPRFGTTQLVVHPSLPLVIGTS-QRTLRKGD-----------RIESIT----------------NDIESELILWNTTHVSPLSEFKGVTEMARISSSNPDKFLSLSWIPEMFHFSLLSITNDGIDLLPNVPSACFIAATDKGLQLYQILLDAKTLLSNLGVLKFSASLPHHMQILSDLIESEQSGSQSACIMNVCQLDDSTDI--KNIHFLHVFDKQSIC----KQTLNGDCLRNKLNTSQTLQQGKQEFYVLTIYNEYGINQKIAVWK-----ISISYDEKYASPLSPASVDGD---FXXXXXXASTFSINHCVSQ-------------ERIYHQDMMTXXXXXXFTHLTATADLHSSNDFCSSLPVKYHFVGISSETIQFWELNLDENETLSVQPTDHIDTKLSWDE-------------------DIVCLSCATSSRLAYISRKPISSGGGNKDYYLHIK--ESETSGEEQWNTEF------------------SQLFYPNVED-------------SNAVKLSWLSLENGQFLLAVAINNEVLIFCRNRTAVLGSSKGTKHVFD-WGVLKTIKVHD-------------DFNDLFRLTTIAWSSAGFFMLGVENEIQVYSQWEDNIEVVFKIKSHFA-------SILSESKEQGVI------LTTNSFSMA---CEQMSC----------------------LPQYHPGYLIQLLNLGKMRRIRAILRHLVR 3634
M LHQVLTGA N ++ +V G+ FT Y SG ++V+L S F R+QI+ P V C+ C +GK+A SYG + ++ P K +L +W+K E I WD RLL GS+ L +W + EDE W C+W + A+ V+L++ SPDG FFA++G+ DC++K+W+ + PD + + E +++F+Y+ HP+ V FSWR+TSK+MP V NVLLT C D+VCR+W ET + P SH NN K+ + K+R ++ L+ QQ +H+ + +HA ++ HFH+AA INP TDI LL +I + S+ F + WLNNKE+ FT ++E +R + + D+ +DVK+ ++T D D ++I + + + G +P+ S + + +A +++ L+ +W ++D L+ IHP+DGSLL+W VD++D++ +RQVQVSF SRIP F DA SLC + + Q + PS ++ + KL++ + M+S HADGSLN WLV+F++ +F+ + SI+H +R CG RF L H LPL++ TS LR D IE + + + SELILW V PLS GV+E+ARI+S + F +++W+P + I + + N PSACF+A+ + L+LY+ ++DAK LLS L + S + I+ S+QS ++ CI+ LD T + + LHVF++ I K++L D + + N + ++FY++ I + +W I +S DEK + LS A + S S FS + + E +Y Q++ + + + + L SS+ + + S E ++FW + + E+ + + ID W+E V +SCA ++RLA ++P S+ ++D+ +H+ E E++G W E S L N +D + V L W+S E+G +L V I +++ ++ V + F W K + + D + F + +++W G ++G++ E+ VY QW+ + + I ++ S++ +S + LT + S+A C + + LPQYHP L++L++LGK+RR +AIL HLV+
Sbjct: 1 MNLHQVLTGAVNPGDHCFSV--GSIGDQRFTAYASGCDIVILGSDFERLQII-PGAKHGNIQVGCVDCSMQQGKIAASYGNVISIFEPVNLPKQKKNLELYSQWQKSGQFFLESIAHNITWDPTGSRLLTGSSYLQLWSNTNLEKPTEDENLNKTDLNFGDWKCIWHCKTASQVHLMKFSPDGEFFATAGKDDCLLKVWYNVENWRTAVTSPDGSSEKQSQGEIDFSFVYLAHPRAVNGFSWRKTSKYMPRASVCNVLLTCCKDNVCRLWVET--FLPNDCLLYGGDCSHWTESINLTNNFKRNAS---SKERVQNALEVNLRHFRRGRRRSLALVAHTGYLPHQQDPHHVHRNTPLHAN------ALCHFHIAASINPATDIPLLPSITSLSLNENEEKTGPFVVHWLNNKELHFTLSMEVFLQQLR----------------------KSFEQPSSEASVEDSNQADVKSDEETDDGVDDLKINPEKK---ELGCDKMVPNSS-----FTSLSSAAIDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIMMYACTKNVDLAIQQGKQKPSGLTRSTSMLISSGHNKSSNSLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPDVDNPEQPFDALNIEECSLTQQNKSTVDVAFQDPSAVYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTL-------IPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLSELSNPEISKYVGEVFNIV-----SQQSTARPGCII---ALDPITKLHGRKTQLLHVFEEDFILNNLEKKSLGKDSILS--NAGSSPNGFSEKFYLIVIECTQDNRSLLHMWNLHLKSIPVSLDEKVDTKLSEAVWQPEEHYSSSPEKILSPFSQKYQACRANLQSTSRLTLFSEMVYSQELHLPEGVEIISIKPSAGHLSSSSIYPACSAPYLLATSCSDEKVRFWRCRVTDGESATSK-NGKIDLAYIWEEWPLLIEDGLQSNSSITVPGRPVEVSCAHTNRLAVAYKQPASNSRSSQDFVMHVSIFECESTGGSCWVLEQTIHLDELSTVLDSGISVDSNLVAYNKQDMYLSSKENITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPLAGKVQDQTGKETLAFPLWESTKVVPLSKFVLLRSVDLVSSVDGSPPFPV-SLSWVRDGILVVGMDCEMHVYCQWQPSSKQEPVITDSYSGSTPSITSLIKQSNSSSGLHPPKKTLTRSMTSLAQKICGKKTAFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVK 1351 HSP 2 Score: 333.954 bits (855), Expect = 1.568e-91 Identity = 184/435 (42.30%), Postives = 263/435 (60.46%), Query Frame = 1
Query: 4072 LPGLSSQEQMYLLALSDTIASSKDLDIERIEGSDIKKYRTEXXXXXXXXXXXXXXXXXXXXXXXVGDFASDSVDECGLRFLILLRHHTTVLKSVSPKQRATLEQMGMLPSEYCWAFHSDCTEELIAMLPGMKRNEPSWMDLRSHGAGWWIRSNDVLKRTIEKVAKTHFQMNKDPLDSAIFYLAMKKKSLICALFRSLRDTKMSAFFSNDFTQERWRKAALKNAYALLGKQRFEHAAAFFILGSAIWDAVQVCVTRLHDIQLALVIARLHENNMDET--HQRVLKTYVLGYEDEPPNK----------DPFKRSMAHWLLKDYRESVDVFLF-TFQENLHSLEDNSPDEFDYPSVFNFYTYLKTHPLLRRRHLTQHRSTSSSITRHEXXXXXXXXXXXXTGENVYTLQRSLCFHTACIHLNSGLPDIALEVLSMLP 5337
LPGLS EQM L+AL+DTIA++ +DI + R + +++DECGL+FL+ +R HT + S+ P RA L G+ S + WAFHS EEL+ MLP M++++P+W +LR+ G GWW+R+ +L++ IEKVAK F DPLD+AIFYLAMKKK++I L+R+ ++T+M+ FF ++F ERWRKAALKNA++LLGKQRFEH+AAFF+L + DA++VC+ +L+DIQLALVIARL+E+ D + ++ +L+ VLG D P ++ DPF RSMA+W+L+DY +++ + +EN D+ P+VFNFY YL+THPLL RRH +S + + H K + +R L F TA HL +G P +ALEVLS +P
Sbjct: 1498 LPGLSRMEQMSLMALADTIATT---------STDIGESRDRSQ-------------------------GGETLDECGLKFLLAVRLHTFLTTSL-PAYRAQLLHQGLSTSHFAWAFHSVAEEELLNMLPAMQKDDPTWSELRAMGVGWWVRNTRILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRAEKNTRMTQFFGHNFEDERWRKAALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYESEFDTSAAYKSILRKKVLGI-DSPVSELCSLNINMHHDPFLRSMAYWILEDYSGALETLIKQPIREN-----DDQVLSASNPTVFNFYNYLRTHPLLLRRHF----GSSDTFSTH-----MSLTGKSGLAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMP 1882 HSP 3 Score: 113.235 bits (282), Expect = 1.562e-24 Identity = 119/472 (25.21%), Postives = 222/472 (47.03%), Query Frame = 1
Query: 5734 TNDIAALNLKFRCIIQLLIEGLKALPSXXXXXXXXXXXXXXNMVQKELEYLHFICDYDRGIDLGGDSTTNESLNDTATFGSSDNEIGSGKSYRSFSSISNTSMDVTQEEASLTQKVEQISVQSEWLKQNQKILASLYEHCLMVGTRD---PXXXXXXXXXXXXXXXXXDHRVLNAPLTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXQSMAHDLLQTVIDLPKLPTPNNPVKRLADLESLMCSLSSCIYHSLCGGDDDRLLTSIHKGETQLVGKQMKDGKLCRIPH---GASNVEIEVTSSPSKWPGVKFFLSILSANKKDERNVLNLLLCEAAVAVYLSFFVSACSRLSCXXXXXXXXXXXXEEMWNHVFGGGTKVVIPAPEALNARSSPILEKRNSAKDTARMKWNYKLLGKQSSGIQQSRVAERDQVTNNNDDQKLVRHELYIPPKLSLCDYFLKKP----KKSRSSFD 7119
+ DI A+ LKFR +++L L+ L + ++ KLR L + ++KE+ L CD+ + E L + FG +++E G N + + + Q E + +WL + Q +L +C++ G+ + + LL + + ++PL+ S P L + ++ ++V++P+ L ++ HD+L +I+ P P+ ++ + +L SLS+CIY LCG + + Q G + L P G+ + + +SP++WPG+ + +L+++ ++ ++ L +LLCE AVYLS F+ + S N L+R V + LNE+MW+ VFGGG V P+ E ++++ P+ + + K+ ++S+ + S + L E +IPP+LS+ DYF+ KP +SR+ +D
Sbjct: 2020 SEDIIAVQLKFRACLKILTVELRTLSTGYEIDGGKLRYQLYHWLEKEVIALQRTCDF---------CSDAEELQ--SAFGRNEDEFGL-----------NEDAEDLPHQTKVKQLRENFQEKRQWLLKYQSLLRMFLSYCILHGSHGGGLASVRMELILLLQESQQETSEPLFSSPLSE---QTSVPLLFACTANAKTVVANPLLHLSNLTHDILHAIINFDSPPHPDIQSNKVYVMHTLAASLSACIYQCLCGSHNYSSFQT-----NQFTGMVYQTVLLPHRPSLKTGSLDEALTPNTSPAQWPGITCLIRLLNSSGEEAQSGLTVLLCEILTAVYLSLFIHGLATHSSNELFRIVAHPLNEKMWSAVFGGGAHV--PSKEQTHSKTLPVSSLVEEGEKQNKRFRPSKMSCRESAPLTPSSAPV--------SQESLAVKEKFIPPELSIWDYFIAKPFLPSSQSRAEYD 2451 The following BLAST results are available for this feature:
BLAST of TCONS_00046630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.