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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046624 ID=TCONS_00046624|Name=TCONS_00046624|organism=Clytia hemisphaerica|type=transcript|length=3006bp
AGGATTTTATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATT
CATAGTTACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGt
ttccattgttttttttggaatctaaaagatgtatcacgaaatgaaacgtt
tttcaacctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCG
GTTTAAAAGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaa
tatAACCCAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGT
CAGTCAgtacctttagccaaattaggaacatttttcttacttttaccaAT
ATATATTCCTAATTAGAAATcctattcctaattaggaagaaaaaaattca
aacttgtttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaat
acTTCTAAATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAG
TTCGGCTGTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAA
TGCAGGAAATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGT
TGGGTGTTATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaa
ttcaaatctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCA
AAATCAACATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAA
AACTTGGCTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCA
AATGTTGTTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTG
AACTTGAGTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATC
TAAAATCTGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACA
GCTCAAATTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGC
CTCGttcgttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCA
GTTGCTGTGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTG
ACAAAGTGCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAG
GGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaattta
tcaaataattgGTAATAGCTAGgGCTCCTTTCAGTGGGATTCTGGAAATT
CTGATATGTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGAC
GATTCTGAAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGA
AACAACGGATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAA
TGCTGGAAAAGACTGCTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGAT
TACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGGCTATGCTTCTCAA
CAATACAATAACATCTACACAAACTGCTAAGACTCAAACCAAAAATGTTA
TAACTgtgaaaaatacacaaaataAATTGGCAATATCGAATCCTCTTATC
TTGAAACCAGTATCACTAGTTAACGGCTCAAACAACACATCAAACATTCA
AACTCACATCAAAATTGGAAACAATGTTTTTGCTATCATCCAAAAAGCTA
ACCCAGCTCCAAAAACAACACTTTCAGTCACAACCAAACCTCAGACTTTG
ACACAAACCTCAAACAACACAAAAGTGGAAACCAATACCCTGAAAATCTG
TCAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTTCTTGATCACGACT
ATACAGAAGAGGAGGATTTTATGGAGACGACTGGTGTCAGTAAGGGATTT
GGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTGGATTTCGA
AAACATTATCATTCCTGAAGATGCTCCCCTgacgaaagaagaagaaaaat
cctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGCAATCAGCAATGGAA
AGCCGTAGAAGACGTAAAGAATATATTGAGAATCTTGAACAAAGAGTGAA
ACACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAGGTGGATAAACTTT
CTGAAGACAATAAATCTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTA
GTTGCAGCATCAGTCAGTTCAAatagaaaagctcaaaaaggAACTTGTCT
TGCTGTTCTGTTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTG
TTCAATTCAACTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCA
CATGCTTTTCGATCAAGGACATTATTATCGATGCCTGAAGATCATGATTT
TATCGATTCGGATCGAAACGATTCGGATGTTTACAATCTGCTcttgaata
atgatgaaaaagaCATTTTAAAGAAGTTGAACCTTGATTTGACGAATGAT
GACTTAGCTTTAGCCAATGCTGCTCTTGTTGAACATAAACAACAAATGAA
TGTTATCGAGCTTGATGAAGAACTGATTGGTAAAAATCATCAACAGAGAC
AGAAAATCAAAGACGAAATGTGATAAAGAGTTATGGCTAATTCTGGATGT
TCATGattaatcttttatacggaaacacacgAAACACTGGGTGTTTGCCA
cgagttttttgtttaaaatgaaaACTGTAGGCAAACACCGGGTGTTTTTC
GGGTGTTTAACGTATAAAGAATGACGCGATGAATATAAAGAATTCAAAAC
AATTTATAAACAATGGCACCTATCAAGAGCGGTGTTCTTTTTGAATGGTG
AGATTCAGTTTTATACCGAAAAAAATTATAGATTTTTGGTATTTCTAATT
CTTCTTTTTGTATATAGTAACTCAACAAATTTATAATGTAATTTATGTAA
AGTATTTATAAAGAAAGAAACTTTGGTTTCCTAAAATCTACACGCTTCTT
TCTTTG Run BLAST on NCBI protein sequence of TCONS_00046624-protein >TCONS_00046624-protein ID=TCONS_00046624-protein|Name=TCONS_00046624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MWGSILDDLPAELSDDSEGGNFVNEPLDWKHETTDLITDASVIQNDVSML
EKTAAEVKDEVEEDDYLRIKNEPMVSMAMLLNNTITSTQTAKTQTKNVIT
VKNTQNKLAISNPLILKPVSLVNGSNNTSNIQTHIKIGNNVFAIIQKANP
APKTTLSVTTKPQTLTQTSNNTKVETNTLKICQPGVEAGKTSSFLDHDYT
EEEDFMETTGVSKGFGPGLVLTDEEKKLLDFENIIIPEDAPLTKEEEKSL
KRVRRKIKNKQSAMESRRRRKEYIENLEQRVKHCTGVNHGLKKKVDKLSE
DNKSLLLQLKQLQAVVAASVSSNRKAQKGTCLAVLLLSFALFYLPFNPVQ
FNSGSKNTVSTEAPSHAFRSRTLLSMPEDHDFIDSDRNDSDVYNLLLNND
EKDILKKLNLDLTNDDLALANAALVEHKQQMNVIELDEELIGKNHQQRQK
IKDEM Run BLAST on NCBI transcript from alignment at scaffold_116:3050..8792+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046624 ID=TCONS_00046624|Name=TCONS_00046624|organism=Clytia hemisphaerica|type=transcript|length=5743bp|location=Sequence derived from alignment at scaffold_116:3050..8792+ (Clytia hemisphaerica)
AGGATTTTATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATT
CATAGTTACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGt
ttccattgttttttttggaatctaaaagatgtatcacgaaatgaaacgtt
tttcaacctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCG
GTTTAAAAGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaa
tatAACCCAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGT
CAGTCAgtacctttagccaaattaggaacatttttcttacttttaccaAT
ATATATTCCTAATTAGAAATcctattcctaattaggaagaaaaaaattca
aacttgtttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaat
acTTCTAAATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAG
TTCGGCTGTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAA
TGCAGGAAATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGT
TGGGTGTTATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaa
ttcaaatctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCA
AAATCAACATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAA
AACTTGGCTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCA
AATGTTGTTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTG
AACTTGAGTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATC
TAAAATCTGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACA
GCTCAAATTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGC
CTCGttcgttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCA
GTTGCTGTGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTG
ACAAAGTGCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAG
GGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaattta
tcaaataattgGTAATAGCTAGGTGGGGAATTAAAATTTTGGTGTGTGAT
TTTCGATTTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAACTTAGGCGt
gtgatttttattttcactattcTCAGCACAATTTCGAGAGCAACCACCTC
TTGCATGTTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTTCAACGTGG
GATTTTATAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAACATTTCAG
GGTCCTACGCGTACAACTACGGGAAACATGTACTTTCCCACCCTTTTAAT
TTGACTTCCCCACCCGTGGGAACTAATGACTTTTTCCTGTGTAACATTGG
CCATCAGTTTCTTTAGGAGGAAGTTGTGGACAATGGCATAAAAAAGTGAA
TCGTCAacactgctctaacttgggacaataattggtcgaaacatgggact
ggttgatatctggcctgtattttcacttgctcttaaatctctttgacaac
aaatttgttttgataactccaacaagtttatcaatcatacttattcgttc
ctcttagagtgcacagacacttgcgtgtgttccactacagatttttttca
tatttcaatttaaaagcctactcggtgcaaaagaaaaattgtgtattttt
caatacgccgttcattaaatCAAATCGAATGACTTTGGAAGTTCGGTTAA
ATTGTAGCTGAATTGCCGTCctatgttttgtcagatagtcccaaatTAGA
GCAGGTGACGGTATCCCTGATCATCTTTGTcaatttttcgtgtttttttt
atcaccatctttcagtagtattctttgtattttgattattgtgttgtttt
tttttcattttataggGCTCCTTTCAGTGGGATTCTGGAAATTCTGATAT
GTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTG
AAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACG
GATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGA
AAAGACTGCTGCAGAAGTAAAGGATGAAGGTATGTCCAAAGAAAAATCCC
CAGGGGGTATTAGGGTTGCAAGCTGATGGGTATGTACCAACCGACTTTAG
ACTTTCAGACCCTTAGCAGGACTAAAAAGcaggaaaatttttgtgaattt
gagaacccttattgggactaatctGACCAAGATCTGACTAGGAACTTATC
TGACCTGATCATCTTTTTAGGGGtacaaagttgaaattttcctattttcc
caacccttagtgagactgaaattcgattttctgatttttctaacCATTgg
tgggactttggaagtcccaaaaaggtacccttaagagCGGCACATACCCC
TGCTCCATCTGCCTAAGTacccaaaaaaatacaaatattataCACAATcc
tattttgacaattttgtgTTTTCTTTCTTTACCAAAGATTATATGAAATT
GATTAACTAAGGCTAGTGAATTGCTTTTGAAAATCTGCCTGTAGGCTAAG
TTAGGTCTCAATTGTCGTTAATCCAGGTTAATCACAATATTGTGTTTCAT
ATTCAGTTGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTT
TCCATGGCTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAA
GACTCAAACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGG
CAATATCGAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCA
AACAACACATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTT
TGCTATCATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCA
CAACCAAACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAA
ACCAATACCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATC
TTCCTTTCTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGA
CTGGTGTCAGTAAGGTATGTTCATTTCAAGGTGGATTGTCTATCTTATTT
GATGGACACAGTAGCACCCATTAGAACGAGATTTAAAATATTAGTTTGTA
CACAAAAAATGACTTATTTCATATGTACCTTACAACAATTTCCACGACTT
TTAGAAAGACAATAACTAATAGAAAGCAGACATTTAAAATTAGCTTTTTT
GCTCATTCCCAGTGAACGAAAAACTTTCCTTATTGATAACACATTGTTTT
GTCTCATAGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAA
ATTGTTGGATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgacga
aagaagaagaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAG
GTATTAggattaaaattttcacaaaaaaggtGCTGGTTCTTTATAAAACC
TTGaattatattcgaattataTCTATTCGAAACCTATTATTCTATATCAA
AATCACATCAACTAAGTTTGTGTCTTATTAAAATTGCGTCTTTTGTTTTA
GCAATCAGCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATC
TTGAACAAAGGTatttgaatttataaaaatgatattattgttataACTTT
TGTATTCAAAGTAACAAACAAGCTGTGGCGATGCCAACTTTTTattagaa
taatttttaaattgCTCGTTTATTTTTGGCTGTGAATTTAGCctcaaatt
ctaaaaataactAAGAAAATCTTCACAAAATAATGACTGGTTCTCAAAAA
AGAACGCCATACTgagttttaaattttctaattaaCTGACCTTTATTTAT
ATCATTTTTTCAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAG
AAAAAGGTGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATT
GAAACAACTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaag
ctcaaaaaggAACTTGTCTTGCTGTAAGTTTAATCTTTGTAATTTcactt
atttttaaaactttgatgggaattttaaatttaatataATACATATATAA
TTTTATATtaagattattttaaaaaccttgtgACTTAATTTTCCACCATG
ATACCATTTAGCCTATATGGCAATAAATTTATATTTGGTATAGTTTATTC
CAAACGTTTTTCAAACTAGCATTAATTTCATCTCTTTTTTTCAGGTTCTG
TTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAA
CTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTGTA
AGTACACAAGATATTATATTGATTTTACTTGAATATATATATCGTCAAGT
GAACACGTGAGCACAATCTGAGAGCTTTGTGACACCATCTCAAGATATTC
AAGGTGTTCTCATTCGTGTACTCATTCGTGTTTGTTCAAGGCGTAGTTTA
TCAAGTCGATGACCTTATGCCAATATCTCGGTGACAATAGTTGaaggatt
tttttcatttgaaatgtaaacaaactgccttaaaagtttgtcaattttgg
cggggattaaatttgtaGTTGTACGCGCCAAGATTGATACACTTATTAAG
GTAGGCTTAAACTCGAGCTTTCCAATTATCTTGTATCTTGTATCCTTTAC
TCATTTTCTCATTATTGTTTATTCTTTAGTTCGATCAAGGACATTATTAT
CGATGCCTGAAGATCATGATTTTATCGATTCGGATCGAAACGANCTATCT
TGTATGTTCCTTTACTCATTTTCTCATTCTTGTTTATTCTTTAGTTCGAT
CAAGGACATTATTATCGATGCCTGAAGATCATGATTTTATCGATTCGGAT
CGAAACGATTCGGATGTTTACAATCTGCTcttgaataatgatgaaaaaga
CATTTTAAAGAAGTTGAACCTTGATTTGACGAATGATGACTTAGCTTTAG
CCAATGCTGCTCTTGTTGAACATAAACAACAAATGAATGTTATCGAGCTT
GATGAAGAACTGATTGGTAAAAATCATCAACAGAGACAGAAAATCAAAGA
CGAAATGTGATAAAGAGTTATGGCTAATTCTGGATGTTCATGattaatct
tttatacggaaacacacgAAACACTGGGTGTTTGCCAcgagttttttgtt
taaaatgaaaACTGTAGGCAAACACCGGGTGTTTTTCGGGTGTTTAACGT
ATAAAGAATGACGCGATGAATATAAAGAATTCAAAACAATTTATAAACAA
TGGCACCTATCAAGAGCGGTGTTCTTTTTGAATGGTGAGATTCAGTTTTA
TACCGAAAAAAATTATAGATTTTTGGTATTTCTAATTCTTCTTTTTGTAT
ATAGTAACTCAACAAATTTATAATGTAATTTATGTAAAGTATTTATAAAG
AAAGAAACTTTGGTTTCCTAAAATCTACACGCTTCTTTCTTTG Coding sequence (CDS) from alignment at scaffold_116:3050..8792+ >TCONS_00046624 ID=TCONS_00046624|Name=TCONS_00046624|organism=Clytia hemisphaerica|type=CDS|length=9576bp|location=Sequence derived from alignment at scaffold_116:3050..8792+ (Clytia hemisphaerica)
ATGTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTC
TGAAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAA
CGGATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTG
GAAAAGACTGCTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGATTACTT
GAGGATAAAAAACGAGCCCATGGTTTCCATGGCTATGCTTCTCAACAATA
CAATAACATCTACACAAACTGCTAAGACTCAAACCAAAAATGTTATAACT
gtgaaaaatacacaaaataAATTGGCAATATCGAATCCTCTTATCTTGAA
ACCAGTATCACTAGTTAACGGCTCAAACAACACATCAAACATTCAAACTC
ACATCAAAATTGGAAACAATGTTTTTGCTATCATCCAAAAAGCTAACCCA
GCTCCAAAAACAACACTTTCAGTCACAACCAAACCTCAGACTTTGACACA
AACCTCAAACAACACAAAAGTGGAAACCAATACCCTGAAAATCTGTCAAC
CAGGAGTTGAAGCTGGCAAAACATCTTCCTTTCTTGATCACGACTATACA
GAAGAGGAGGATTTTATGGAGACGACTGGTGTCAGTAAGGGATTTGGACC
AGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTGGATTTCGAAAACA
TTATCATTCCTGAAGATGCTCCCCTgacgaaagaagaagaaaaatcctTG
AAAAGAGTTCGGCGTAAAATCAAGAATAAGCAATCAGCAATGGAAAGCCG
TAGAAGACGTAAAGAATATATTGAGAATCTTGAACAAAGAGTGAAACACT
GCACAGGCGTCAACCATGGCCTCAAGAAAAAGGTGGATAAACTTTCTGAA
GACAATAAATCTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTAGTTGC
AGCATCAGTCAGTTCAAatagaaaagctcaaaaaggAACTTGTCTTGCTG
TTCTGTTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAA
TTCAACTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGC
TTTTCGATCAAGGACATTATTATCGATGCCTGAAGATCATGATTTTATCG
ATTCGGATCGAAACGATTCGGATGTTTACAATCTGCTcttgaataatgat
gaaaaagaCATTTTAAAGAAGTTGAACCTTGATTTGACGAATGATGACTT
AGCTTTAGCCAATGCTGCTCTTGTTGAACATAAACAACAAATGAATGTTA
TCGAGCTTGATGAAGAACTGATTGGTAAAAATCATCAACAGAGACAGAAA
ATCAAAGACGAAATGTGAATGTGGGGCTCAATCCTTGATGATCTACCAGC
TGAATTATCAGACGATTCTGAAGGTGGCAATTTCGTCAATGAACCTTTAG
ATTGGAAGCATGAAACAACGGATTTAATTACAGATGCATCAGTGATTCAA
AATGATGTTTCAATGCTGGAAAAGACTGCTGCAGAAGTAAAGGATGAAGT
TGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGG
CTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAAGACTCAA
ACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGGCAATATC
GAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCAAACAACA
CATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTTTGCTATC
ATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCACAACCAA
ACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAAACCAATA
CCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTT
CTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGACTGGTGT
CAGTAAGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAAT
TGTTGGATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgacgaaa
gaagaagaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGCA
ATCAGCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATCTTG
AACAAAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAG
GTGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATTGAAACA
ACTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaagctcaaa
aaggAACTTGTCTTGCTGTTCTGTTACTCTCCTTCGCACTTTTCTACTTA
CCATTCAACCCTGTTCAATTCAACTCTGGATCGAAAAACACAGTCTCAAC
AGAAGCCCCATCACATGCTTTTCGATCAAGGACATTATTATCGATGCCTG
AAGATCATGATTTTATCGATTCGGATCGAAACGATTCGGATGTTTACAAT
CTGCTcttgaataatgatgaaaaagaCATTTTAAAGAAGTTGAACCTTGA
TTTGACGAATGATGACTTAGCTTTAGCCAATGCTGCTCTTGTTGAACATA
AACAACAAATGAATGTTATCGAGCTTGATGAAGAACTGATTGGTAAAAAT
CATCAACAGAGACAGAAAATCAAAGACGAAATGTGAATGTGGGGCTCAAT
CCTTGATGATCTACCAGCTGAATTATCAGACGATTCTGAAGGTGGCAATT
TCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACGGATTTAATTACA
GATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGAAAAGACTGCTGC
AGAAGTAAAGGATGAAGTTGAAGAAGATGATTACTTGAGGATAAAAAACG
AGCCCATGGTTTCCATGGCTATGCTTCTCAACAATACAATAACATCTACA
CAAACTGCTAAGACTCAAACCAAAAATGTTATAACTgtgaaaaatacaca
aaataAATTGGCAATATCGAATCCTCTTATCTTGAAACCAGTATCACTAG
TTAACGGCTCAAACAACACATCAAACATTCAAACTCACATCAAAATTGGA
AACAATGTTTTTGCTATCATCCAAAAAGCTAACCCAGCTCCAAAAACAAC
ACTTTCAGTCACAACCAAACCTCAGACTTTGACACAAACCTCAAACAACA
CAAAAGTGGAAACCAATACCCTGAAAATCTGTCAACCAGGAGTTGAAGCT
GGCAAAACATCTTCCTTTCTTGATCACGACTATACAGAAGAGGAGGATTT
TATGGAGACGACTGGTGTCAGTAAGGGATTTGGACCAGGTCTTGTTTTAA
CTGATGAAGAAAAGAAATTGTTGGATTTCGAAAACATTATCATTCCTGAA
GATGCTCCCCTgacgaaagaagaagaaaaatcctTGAAAAGAGTTCGGCG
TAAAATCAAGAATAAGCAATCAGCAATGGAAAGCCGTAGAAGACGTAAAG
AATATATTGAGAATCTTGAACAAAGAGTGAAACACTGCACAGGCGTCAAC
CATGGCCTCAAGAAAAAGGTGGATAAACTTTCTGAAGACAATAAATCTCT
TCTTTTGCAATTGAAACAACTCCAAGCTGTAGTTGCAGCATCAGTCAGTT
CAAatagaaaagctcaaaaaggAACTTGTCTTGCTGTTCTGTTACTCTCC
TTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAACTCTGGATC
GAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTTTCGATCAAGGA
CATTATTATCGATGCCTGAAGATCATGATTTTATCGATTCGGATCGAAAC
GATTCGGATGTTTACAATCTGCTcttgaataatgatgaaaaagaCATTTT
AAAGAAGTTGAACCTTGATTTGACGAATGATGACTTAGCTTTAGCCAATG
CTGCTCTTGTTGAACATAAACAACAAATGAATGTTATCGAGCTTGATGAA
GAACTGATTGGTAAAAATCATCAACAGAGACAGAAAATCAAAGACGAAAT
GTGAATGTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGACG
ATTCTGAAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAA
ACAACGGATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAAT
GCTGGAAAAGACTGCTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGATT
ACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGGCTATGCTTCTCAAC
AATACAATAACATCTACACAAACTGCTAAGACTCAAACCAAAAATGTTAT
AACTgtgaaaaatacacaaaataAATTGGCAATATCGAATCCTCTTATCT
TGAAACCAGTATCACTAGTTAACGGCTCAAACAACACATCAAACATTCAA
ACTCACATCAAAATTGGAAACAATGTTTTTGCTATCATCCAAAAAGCTAA
CCCAGCTCCAAAAACAACACTTTCAGTCACAACCAAACCTCAGACTTTGA
CACAAACCTCAAACAACACAAAAGTGGAAACCAATACCCTGAAAATCTGT
CAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTTCTTGATCACGACTA
TACAGAAGAGGAGGATTTTATGGAGACGACTGGTGTCAGTAAGGGATTTG
GACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTGGATTTCGAA
AACATTATCATTCCTGAAGATGCTCCCCTgacgaaagaagaagaaaaatc
ctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGCAATCAGCAATGGAAA
GCCGTAGAAGACGTAAAGAATATATTGAGAATCTTGAACAAAGAGTGAAA
CACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAGGTGGATAAACTTTC
TGAAGACAATAAATCTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTAG
TTGCAGCATCAGTCAGTTCAAatagaaaagctcaaaaaggAACTTGTCTT
GCTGTTCTGTTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGT
TCAATTCAACTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCAC
ATGCTTTTCGATCAAGGACATTATTATCGATGCCTGAAGATCATGATTTT
ATCGATTCGGATCGAAACGATTCGGATGTTTACAATCTGCTcttgaataa
tgatgaaaaagaCATTTTAAAGAAGTTGAACCTTGATTTGACGAATGATG
ACTTAGCTTTAGCCAATGCTGCTCTTGTTGAACATAAACAACAAATGAAT
GTTATCGAGCTTGATGAAGAACTGATTGGTAAAAATCATCAACAGAGACA
GAAAATCAAAGACGAAATGTGAATGTGGGGCTCAATCCTTGATGATCTAC
CAGCTGAATTATCAGACGATTCTGAAGGTGGCAATTTCGTCAATGAACCT
TTAGATTGGAAGCATGAAACAACGGATTTAATTACAGATGCATCAGTGAT
TCAAAATGATGTTTCAATGCTGGAAAAGACTGCTGCAGAAGTAAAGGATG
AAGTTGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTTTCC
ATGGCTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAAGAC
TCAAACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGGCAA
TATCGAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCAAAC
AACACATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTTTGC
TATCATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCACAA
CCAAACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAAACC
AATACCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATCTTC
CTTTCTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGACTG
GTGTCAGTAAGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAG
AAATTGTTGGATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgac
gaaagaagaagaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATA
AGCAATCAGCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAAT
CTTGAACAAAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAGAA
AAAGGTGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATTGA
AACAACTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaagct
caaaaaggAACTTGTCTTGCTGTTCTGTTACTCTCCTTCGCACTTTTCTA
CTTACCATTCAACCCTGTTCAATTCAACTCTGGATCGAAAAACACAGTCT
CAACAGAAGCCCCATCACATGCTTTTCGATCAAGGACATTATTATCGATG
CCTGAAGATCATGATTTTATCGATTCGGATCGAAACGATTCGGATGTTTA
CAATCTGCTcttgaataatgatgaaaaagaCATTTTAAAGAAGTTGAACC
TTGATTTGACGAATGATGACTTAGCTTTAGCCAATGCTGCTCTTGTTGAA
CATAAACAACAAATGAATGTTATCGAGCTTGATGAAGAACTGATTGGTAA
AAATCATCAACAGAGACAGAAAATCAAAGACGAAATGTGAATGTGGGGCT
CAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTGAAGGTGGC
AATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACGGATTTAAT
TACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGAAAAGACTG
CTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGATTACTTGAGGATAAAA
AACGAGCCCATGGTTTCCATGGCTATGCTTCTCAACAATACAATAACATC
TACACAAACTGCTAAGACTCAAACCAAAAATGTTATAACTgtgaaaaata
cacaaaataAATTGGCAATATCGAATCCTCTTATCTTGAAACCAGTATCA
CTAGTTAACGGCTCAAACAACACATCAAACATTCAAACTCACATCAAAAT
TGGAAACAATGTTTTTGCTATCATCCAAAAAGCTAACCCAGCTCCAAAAA
CAACACTTTCAGTCACAACCAAACCTCAGACTTTGACACAAACCTCAAAC
AACACAAAAGTGGAAACCAATACCCTGAAAATCTGTCAACCAGGAGTTGA
AGCTGGCAAAACATCTTCCTTTCTTGATCACGACTATACAGAAGAGGAGG
ATTTTATGGAGACGACTGGTGTCAGTAAGGGATTTGGACCAGGTCTTGTT
TTAACTGATGAAGAAAAGAAATTGTTGGATTTCGAAAACATTATCATTCC
TGAAGATGCTCCCCTgacgaaagaagaagaaaaatcctTGAAAAGAGTTC
GGCGTAAAATCAAGAATAAGCAATCAGCAATGGAAAGCCGTAGAAGACGT
AAAGAATATATTGAGAATCTTGAACAAAGAGTGAAACACTGCACAGGCGT
CAACCATGGCCTCAAGAAAAAGGTGGATAAACTTTCTGAAGACAATAAAT
CTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTAGTTGCAGCATCAGTC
AGTTCAAatagaaaagctcaaaaaggAACTTGTCTTGCTGTTCTGTTACT
CTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAACTCTG
GATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTTTCGATCA
AGGACATTATTATCGATGCCTGAAGATCATGATTTTATCGATTCGGATCG
AAACGATTCGGATGTTTACAATCTGCTcttgaataatgatgaaaaagaCA
TTTTAAAGAAGTTGAACCTTGATTTGACGAATGATGACTTAGCTTTAGCC
AATGCTGCTCTTGTTGAACATAAACAACAAATGAATGTTATCGAGCTTGA
TGAAGAACTGATTGGTAAAAATCATCAACAGAGACAGAAAATCAAAGACG
AAATGTGAATGTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCA
GACGATTCTGAAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCA
TGAAACAACGGATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTT
CAATGCTGGAAAAGACTGCTGCAGAAGTAAAGGATGAAGTTGAAGAAGAT
GATTACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGGCTATGCTTCT
CAACAATACAATAACATCTACACAAACTGCTAAGACTCAAACCAAAAATG
TTATAACTgtgaaaaatacacaaaataAATTGGCAATATCGAATCCTCTT
ATCTTGAAACCAGTATCACTAGTTAACGGCTCAAACAACACATCAAACAT
TCAAACTCACATCAAAATTGGAAACAATGTTTTTGCTATCATCCAAAAAG
CTAACCCAGCTCCAAAAACAACACTTTCAGTCACAACCAAACCTCAGACT
TTGACACAAACCTCAAACAACACAAAAGTGGAAACCAATACCCTGAAAAT
CTGTCAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTTCTTGATCACG
ACTATACAGAAGAGGAGGATTTTATGGAGACGACTGGTGTCAGTAAGGGA
TTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTGGATTT
CGAAAACATTATCATTCCTGAAGATGCTCCCCTgacgaaagaagaagaaa
aatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGCAATCAGCAATG
GAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATCTTGAACAAAGAGT
GAAACACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAGGTGGATAAAC
TTTCTGAAGACAATAAATCTCTTCTTTTGCAATTGAAACAACTCCAAGCT
GTAGTTGCAGCATCAGTCAGTTCAAatagaaaagctcaaaaaggAACTTG
TCTTGCTGTTCTGTTACTCTCCTTCGCACTTTTCTACTTACCATTCAACC
CTGTTCAATTCAACTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCA
TCACATGCTTTTCGATCAAGGACATTATTATCGATGCCTGAAGATCATGA
TTTTATCGATTCGGATCGAAACGATTCGGATGTTTACAATCTGCTcttga
ataatgatgaaaaagaCATTTTAAAGAAGTTGAACCTTGATTTGACGAAT
GATGACTTAGCTTTAGCCAATGCTGCTCTTGTTGAACATAAACAACAAAT
GAATGTTATCGAGCTTGATGAAGAACTGATTGGTAAAAATCATCAACAGA
GACAGAAAATCAAAGACGAAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046624-exon-scaffold_116-1491911889:3050..4271 | TCONS_00046624-exon-scaffold_116-1491911889:3050..4271 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:3050..4271 | TCONS_00046624-exon-scaffold_116-1510915933:3050..4271 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:3050..4271 | TCONS_00046624-exon-scaffold_116-1575043694:3050..4271 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:5115..5328 | TCONS_00046624-exon-scaffold_116-1491911889:5115..5328 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:5115..5328 | TCONS_00046624-exon-scaffold_116-1510915933:5115..5328 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:5115..5328 | TCONS_00046624-exon-scaffold_116-1575043694:5115..5328 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:5856..6313 | TCONS_00046624-exon-scaffold_116-1491911889:5856..6313 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:5856..6313 | TCONS_00046624-exon-scaffold_116-1510915933:5856..6313 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:5856..6313 | TCONS_00046624-exon-scaffold_116-1575043694:5856..6313 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:6559..6699 | TCONS_00046624-exon-scaffold_116-1491911889:6559..6699 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:6559..6699 | TCONS_00046624-exon-scaffold_116-1510915933:6559..6699 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:6559..6699 | TCONS_00046624-exon-scaffold_116-1575043694:6559..6699 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:6851..6909 | TCONS_00046624-exon-scaffold_116-1491911889:6851..6909 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:6851..6909 | TCONS_00046624-exon-scaffold_116-1510915933:6851..6909 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:6851..6909 | TCONS_00046624-exon-scaffold_116-1575043694:6851..6909 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:7163..7322 | TCONS_00046624-exon-scaffold_116-1491911889:7163..7322 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:7163..7322 | TCONS_00046624-exon-scaffold_116-1510915933:7163..7322 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:7163..7322 | TCONS_00046624-exon-scaffold_116-1575043694:7163..7322 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:7544..7646 | TCONS_00046624-exon-scaffold_116-1491911889:7544..7646 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:7544..7646 | TCONS_00046624-exon-scaffold_116-1510915933:7544..7646 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:7544..7646 | TCONS_00046624-exon-scaffold_116-1575043694:7544..7646 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1491911889:8144..8792 | TCONS_00046624-exon-scaffold_116-1491911889:8144..8792 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1510915933:8144..8792 | TCONS_00046624-exon-scaffold_116-1510915933:8144..8792 | Clytia hemisphaerica | exon |
| TCONS_00046624-exon-scaffold_116-1575043694:8144..8792 | TCONS_00046624-exon-scaffold_116-1575043694:8144..8792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:3050..8792 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00046624 vs. Swiss-Prot (Human)
Match: CR3L3 (Cyclic AMP-responsive element-binding protein 3-like protein 3 OS=Homo sapiens GN=CREB3L3 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 7.737e-28 Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 2
Query: 1910 LVLTDEEKKLLDFENIIIPEDAPLTKEEEKSLKRVRRKIKNKQSAMESRRRRKEYIENLEQRVKHCTGVNHGLKKKVDKLSEDNXXXXXXXXXXXXXXXXXXXXNRKAQKGTCLAVLLLSFALFYLP-FNPVQFNSGSKNTVSTEAPSHAFRSRTL 2374
LVLT++EKKLL E I +P PLTK EE+ LK++RRKI+NKQSA ESR+++KEYI+ LE R+ CT N L++KV L + N L L + + S+++ AQ GTC+AVLLLSFAL LP +P F + AP F SRTL
Sbjct: 213 LVLTEDEKKLLAKEGITLPTQLPLTKYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQN--LSLLEQLKKLQAIVVQSTSKSAQTGTCVAVLLLSFALIILPSISP--FGPNKTESPGDFAPVRVF-SRTL 363
The following BLAST results are available for this feature:
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