TCONS_00046611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046611
Unique NameTCONS_00046611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046611 ID=TCONS_00046611|Name=TCONS_00046611|organism=Clytia hemisphaerica|type=transcript|length=339bp
GCAGAAAGCAGTGGTGGAAGCTAAAAAAGCTGCCAAAGATAAAGCTCTGG
AAACAGCGACCGATTTGAATAGACATTCTTCTCGTGTCAAACTAAATGTG
GTTCTGAAAGCACCGACTATTATCATTCCAGTTGGATCAAACAATGAATT
GGCTTTACTGGTGGATCTGGGTGAATTGCGTGTTTACAACACATTCAAAC
TCCTCAACGATGATCAATACCATAAGAAATCTATTATCACTGATAACATG
ACCATTAAGTTACCCAATCTGAAATTATTAAAAGCACTGATCCAAGATGG
AAAAGATTTCTTGCATCAACGAGCTATTATTGAACCAAT
Run BLAST on NCBI

protein sequence of TCONS_00046611-protein

>TCONS_00046611-protein ID=TCONS_00046611-protein|Name=TCONS_00046611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
QKAVVEAKKAAKDKALETATDLNRHSSRVKLNVVLKAPTIIIPVGSNNEL
ALLVDLGELRVYNTFKLLNDDQYHKKSIITDNMTIKLPNLKLLKALIQDG
KDFLHQRAIIEP
Run BLAST on NCBI

transcript from alignment at scaffold_114:168381..168719

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046611 ID=TCONS_00046611|Name=TCONS_00046611|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_114:168381..168719 (Clytia hemisphaerica)
ATTGGTTCAATAATAGCTCGTTGATGCAAGAAATCTTTTCCATCTTGGAT
CAGTGCTTTTAATAATTTCAGATTGGGTAACTTAATGGTCATGTTATCAG
TGATAATAGATTTCTTATGGTATTGATCATCGTTGAGGAGTTTGAATGTG
TTGTAAACACGCAATTCACCCAGATCCACCAGTAAAGCCAATTCATTGTT
TGATCCAACTGGAATGATAATAGTCGGTGCTTTCAGAACCACATTTAGTT
TGACACGAGAAGAATGTCTATTCAAATCGGTCGCTGTTTCCAGAGCTTTA
TCTTTGGCAGCTTTTTTAGCTTCCACCACTGCTTTCTGC

Coding sequence (CDS) from alignment at scaffold_114:168381..168719

>TCONS_00046611 ID=TCONS_00046611|Name=TCONS_00046611|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_114:168381..168719 (Clytia hemisphaerica)
TGGTTCAATAATAGCTCGTTGATGCAAGAAATCTTTTCCATCTTGGATCA
GTGCTTTTAATAATTTCAGATTGGGTAACTTAATGGTCATGTTATCAGTG
ATAATAGATTTCTTATGGTATTGATCATCGTTGAGGAGTTTGAATGTGTT
GTAAACACGCAATTCACCCAGATCCACCAGTAAAGCCAATTCATTGTTTG
ATCCAACTGGAATGATAATAGTCGGTGCTTTCAGAACCACATTTAGTTTG
ACACGAGAAGAATGTCTATTCAAATCGGTCGCTGTTTCCAGAGCTTTATC
TTTGGCAGCTTTTTTAGCTTCCACCACTGCTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029755XLOC_029755Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046611-proteinTCONS_00046611-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046611-exon-scaffold_114-1491911889:168381..168719TCONS_00046611-exon-scaffold_114-1491911889:168381..168719Clytia hemisphaericaexon
TCONS_00046611-exon-scaffold_114-1510915933:168381..168719TCONS_00046611-exon-scaffold_114-1510915933:168381..168719Clytia hemisphaericaexon
TCONS_00046611-exon-scaffold_114-1575043694:168381..168719TCONS_00046611-exon-scaffold_114-1575043694:168381..168719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:168381..168719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.53506	0	0	5.88841	2.90819	1.7543	4.5986	4.39815	3.20259	1.45951	3.64664	4.23017	2.58603	3.99831	4.31724	2.02547	0.742166	2.41791	4.43392	1.67149	0	0	0.380965	2.93004	1.569	0.399751	0	0.418337	0.346555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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