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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046610 ID=TCONS_00046610|Name=TCONS_00046610|organism=Clytia hemisphaerica|type=transcript|length=927bp
aacttttgaatttgtacccctttgagagacttttgaggaatgagaaaagg
tacccttagggctcgcacatacccggcacccattttgcctaagtaacccc
ccCGGGTAACATGCTTTGTATATTCAACGTTGAGTTTATCATGGTCTTGT
TGAAAACGTTGCAAGCTGCAATACCTAAAGATGATAGTCTGCAACATGGT
CACTCAATGAGTAGTTTAGACTCGGTGGCAGGGTCTGGCGGCAGCGATGA
CGAGGACTCTTTAGAAGCCAGCGATATTGTCCTCTGCACTAGTGATCAAG
AAAGACCTGAGACTAAAGTCTCTATCTTCGTCCATAACCCGCAAATCGTT
TTACTAGCAGATGCAAAGGATGTCAAAACAAATGCACTCTTTCTTACAAC
CGAGATCAATTTCCAATACTTCGAATTGCTAGATACTCAAAAAATAATTA
GCACTGTTTCTAACACCGCTATTTTGTCAACTGCTTTCAAGAATGAGCAT
CGGAGTGATATATCAACAGTGTTGTCATTAGATTCCATCAATCTCCACTC
GTCAGCACCCATCAATGGTAAACCTCATATGAGTGTCAGCACAACTTTGA
TCAAACTGAATATCTCACCCAAAACCATCCGAACTTTATCAGCCTGTGCT
GGTTACATCTCCAATGATCCAACAGATGAAGAGATCAAAGAAGCTTGAAA
AGCCATGCGTGATTGATGGCAAATTCAAACGTTCACCAATAAACGACCGT
GGTATTTGAACCACCTACCACAACAAGTCTTAAGTGCTGGCAGCTTTGTC
CTTGCGCGAACGAGAACAAGAAATATATAAGCATGGTTTCTTAGCTAAAA
AGGATGTTTCGTATCAAGTCTATTTTTCAGAGGAGCGAGGAACAGCCAGT
CACCGAGCTATGGATATCTCATTACAC Run BLAST on NCBI protein sequence of TCONS_00046610-protein >TCONS_00046610-protein ID=TCONS_00046610-protein|Name=TCONS_00046610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MLCIFNVEFIMVLLKTLQAAIPKDDSLQHGHSMSSLDSVAGSGGSDDEDS
LEASDIVLCTSDQERPETKVSIFVHNPQIVLLADAKDVKTNALFLTTEIN
FQYFELLDTQKIISTVSNTAILSTAFKNEHRSDISTVLSLDSINLHSSAP
INGKPHMSVSTTLIKLNISPKTIRTLSACAGYISNDPTDEEIKEA Run BLAST on NCBI transcript from alignment at scaffold_114:164425..165351 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046610 ID=TCONS_00046610|Name=TCONS_00046610|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at scaffold_114:164425..165351 (Clytia hemisphaerica)
GTGTAATGAGATATCCATAGCTCGGTGACTGGCTGTTCCTCGCTCCTCTG
AAAAATAGACTTGATACGAAACATCCTTTTTAGCTAAGAAACCATGCTTA
TATATTTCTTGTTCTCGTTCGCGCAAGGACAAAGCTGCCAGCACTTAAGA
CTTGTTGTGGTAGGTGGTTCAAATACCACGGTCGTTTATTGGTGAACGTT
TGAATTTGCCATCAATCACGCATGGCTTTTCAAGCTTCTTTGATCTCTTC
ATCTGTTGGATCATTGGAGATGTAACCAGCACAGGCTGATAAAGTTCGGA
TGGTTTTGGGTGAGATATTCAGTTTGATCAAAGTTGTGCTGACACTCATA
TGAGGTTTACCATTGATGGGTGCTGACGAGTGGAGATTGATGGAATCTAA
TGACAACACTGTTGATATATCACTCCGATGCTCATTCTTGAAAGCAGTTG
ACAAAATAGCGGTGTTAGAAACAGTGCTAATTATTTTTTGAGTATCTAGC
AATTCGAAGTATTGGAAATTGATCTCGGTTGTAAGAAAGAGTGCATTTGT
TTTGACATCCTTTGCATCTGCTAGTAAAACGATTTGCGGGTTATGGACGA
AGATAGAGACTTTAGTCTCAGGTCTTTCTTGATCACTAGTGCAGAGGACA
ATATCGCTGGCTTCTAAAGAGTCCTCGTCATCGCTGCCGCCAGACCCTGC
CACCGAGTCTAAACTACTCATTGAGTGACCATGTTGCAGACTATCATCTT
TAGGTATTGCAGCTTGCAACGTTTTCAACAAGACCATGATAAACTCAACG
TTGAATATACAAAGCATGTTACCCGggggggttacttaggcaaaatgggt
gccgggtatgtgcgagccctaagggtaccttttctcattcctcaaaagtc
tctcaaaggggtacaaattcaaaagtt Coding sequence (CDS) from alignment at scaffold_114:164425..165351 >TCONS_00046610 ID=TCONS_00046610|Name=TCONS_00046610|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_114:164425..165351 (Clytia hemisphaerica)
TCAAGCTTCTTTGATCTCTTCATCTGTTGGATCATTGGAGATGTAACCAG
CACAGGCTGATAAAGTTCGGATGGTTTTGGGTGAGATATTCAGTTTGATC
AAAGTTGTGCTGACACTCATATGAGGTTTACCATTGATGGGTGCTGACGA
GTGGAGATTGATGGAATCTAATGACAACACTGTTGATATATCACTCCGAT
GCTCATTCTTGAAAGCAGTTGACAAAATAGCGGTGTTAGAAACAGTGCTA
ATTATTTTTTGAGTATCTAGCAATTCGAAGTATTGGAAATTGATCTCGGT
TGTAAGAAAGAGTGCATTTGTTTTGACATCCTTTGCATCTGCTAGTAAAA
CGATTTGCGGGTTATGGACGAAGATAGAGACTTTAGTCTCAGGTCTTTCT
TGATCACTAGTGCAGAGGACAATATCGCTGGCTTCTAAAGAGTCCTCGTC
ATCGCTGCCGCCAGACCCTGCCACCGAGTCTAAACTACTCATTGAGTGAC
CATGTTGCAGACTATCATCTTTAGGTATTGCAGCTTGCAACGTTTTCAAC
AAGACCATGATAAACTCAACGTTGAATATACAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046610-exon-scaffold_114-1491911889:164425..165351 | TCONS_00046610-exon-scaffold_114-1491911889:164425..165351 | Clytia hemisphaerica | exon |
| TCONS_00046610-exon-scaffold_114-1510915933:164425..165351 | TCONS_00046610-exon-scaffold_114-1510915933:164425..165351 | Clytia hemisphaerica | exon |
| TCONS_00046610-exon-scaffold_114-1575043694:164425..165351 | TCONS_00046610-exon-scaffold_114-1575043694:164425..165351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_114 | supercontig | scaffold_114:164425..165351 . |
Blast
The following BLAST results are available for this feature:
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