TCONS_00046562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046562
Unique NameTCONS_00046562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046562 ID=TCONS_00046562|Name=TCONS_00046562|organism=Clytia hemisphaerica|type=transcript|length=352bp
CGAAAATAAACTTTCCAATAATCAATCCTAAAGTAAGAATTACTTTTATG
TCAAAAGTTAACTTCAAAATTTTactcttttttaacaaaataggAATaga
taattttcaaaactttgaaaatcagGTCTTAAAATAATTAGATaattaca
aaataaatttctacCATCACCACTGCAAGCCCCACAATTTGGAGCTATTC
AGGAGCGTTTTACTATTATAAATAATAGTACAccaaaaatcaatcaatca
agtcaatttacagagagtaatttaaaccactttttaGCTAAGACGACTAA
TGTGTACATCTAATTacggaaagattcgaataatagaggtttgaattaga
ga
Run BLAST on NCBI

transcript from alignment at scaffold_113:131778..132129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046562 ID=TCONS_00046562|Name=TCONS_00046562|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at scaffold_113:131778..132129 (Clytia hemisphaerica)
tctctaattcaaacctctattattcgaatctttccgtAATTAGATGTACA
CATTAGTCGTCTTAGCtaaaaagtggtttaaattactctctgtaaattga
cttgattgattgatttttggTGTACTATTATTTATAATAGTAAAACGCTC
CTGAATAGCTCCAAATTGTGGGGCTTGCAGTGGTGATGgtagaaatttat
tttgtaattATCTAATTATTTTAAGACctgattttcaaagttttgaaaat
tatctATTcctattttgttaaaaaagagtAAAATTTTGAAGTTAACTTTT
GACATAAAAGTAATTCTTACTTTAGGATTGATTATTGGAAAGTTTATTTT
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029711XLOC_029711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046562-exon-scaffold_113-1491911889:131778..132129TCONS_00046562-exon-scaffold_113-1491911889:131778..132129Clytia hemisphaericaexon
TCONS_00046562-exon-scaffold_113-1510915933:131778..132129TCONS_00046562-exon-scaffold_113-1510915933:131778..132129Clytia hemisphaericaexon
TCONS_00046562-exon-scaffold_113-1575043694:131778..132129TCONS_00046562-exon-scaffold_113-1575043694:131778..132129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:131778..132129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.496192	0.483865	0	0	0	0	0	0	0.209066	0.776884	0	0.660922	0.165001	0.514065	0.281754	0.302365	11.9197	6.87221	0.263731	0.551952	16.0715	14.0402	3.12908	2.32755	0.26637	0.475457	1.36075	0	0.826101	0.561111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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