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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046524 ID=TCONS_00046524|Name=TCONS_00046524|organism=Clytia hemisphaerica|type=transcript|length=4169bpRun BLAST on NCBI transcript from alignment at scaffold_113:156667..164530- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046524 ID=TCONS_00046524|Name=TCONS_00046524|organism=Clytia hemisphaerica|type=transcript|length=7864bp|location=Sequence derived from alignment at scaffold_113:156667..164530- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046524 vs. Swiss-Prot (Human)
Match: MPP6 (MAGUK p55 subfamily member 6 OS=Homo sapiens GN=MPP6 PE=1 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 1.733e-78 Identity = 140/344 (40.70%), Postives = 218/344 (63.37%), Query Frame = 1
Query: 238 GGVTVKCIPAFKDSRTSKCQVHMRCHFEYSPNEDKDFPKGETGLSFQPCDILEIIDQTDSDWWQAKHIDESKT-GIIPSLKLEQTRKAANLIPKNKQNXXXXXXXXXXXXXXVYQTCKNSIFDCFDVRLYEEVAKMPAIENKVIAFVGTQGLGKKSVITRLLSNYADRYVSVVPDTSREPREDEEQKKGYNFMNKEEMHKDILAGKYYEWGEDKGNYYGSKLSSIRDIINSGKIALVDCEASALKFLRTAEFMPFIVFFNAPDMQTLQKYNQQS-----NSKVSTREELDRIIEESADISETYHHYFDKTIEGGNAEQSYNTLREVIEARSNMTHQWVPISWVY 1251
G VT+K +P+++D+ T + QV ++CHF+Y+P D P E GL F +IL+I+++ D +WWQA H+ E + G+IPS LE+ RKA + G K KKK++Y T +N+ FD ++++YEEVAKMP + K + +G QG+G++S+ R + R+ + VP TSR+PREDE+ + Y F+++ EM DI AGKY E GE +GN YG+K+ SI +++ +G+ ++D ALK LRT+EFMP++VF AP+++TL+ ++ +K+ T +L + ++ESA I Y+HYFD I N ++++ L+ IE + M QWVPISWVY
Sbjct: 199 GSVTLKILPSYRDTITPQ-QVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIINDNLDKAFEKLQTAIE-KLRMEPQWVPISWVY 540 The following BLAST results are available for this feature:
BLAST of TCONS_00046524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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