|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046516 ID=TCONS_00046516|Name=TCONS_00046516|organism=Clytia hemisphaerica|type=transcript|length=4016bpRun BLAST on NCBI protein sequence of TCONS_00046516-protein >TCONS_00046516-protein ID=TCONS_00046516-protein|Name=TCONS_00046516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=801bp MPRPRNGVIPKPLPAGWEEAKTNEGKFYYIDHNSQKTSWIDPRDREIKPKRun BLAST on NCBI transcript from alignment at scaffold_113:496245..512640+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046516 ID=TCONS_00046516|Name=TCONS_00046516|organism=Clytia hemisphaerica|type=transcript|length=16396bp|location=Sequence derived from alignment at scaffold_113:496245..512640+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_113:496245..512640+ >TCONS_00046516 ID=TCONS_00046516|Name=TCONS_00046516|organism=Clytia hemisphaerica|type=CDS|length=26466bp|location=Sequence derived from alignment at scaffold_113:496245..512640+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046516 vs. Swiss-Prot (Human)
Match: KIBRA (Protein KIBRA OS=Homo sapiens GN=WWC1 PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 3.018e-62 Identity = 151/425 (35.53%), Postives = 231/425 (54.35%), Query Frame = 1
Query: 352 MPRPRNGVIPKPLPAGWEEAKTNEGKFYYIDHNSQKTSWIDPRDREIKPKTFADCIGKELPIGWEECQDDVIGTYFTDHNAENNQLEDPRQQWHEEQQIMLGDYLLRTKLDIEAQQNLVNVKQRRLRLAQNKVDYLEGLERQHF--ETNSSQMSPAKARYDSHQLKFDIANARERVGNLKKELHNVSDEVRHQQEGHDRLEKINETLS-SNGPYQVDTAREKVTVMNDVREQLLLGEQEKIHILQDLLRQRDEYRSDIAGYNQKAGSCTSLNSTG---------SNGQLSMNGSEENVNTN-----KRQLRKDYQLALHRVQKLQAGLELLNHHLRNTQNGPEQHRLALYNEKQQLFTELQRCDEYIKTEEARMHLESEKDLLSNELISMRDVSTKVIEDRNRLENDRKILETHLAEKTRQTNLL 1575
MPRP PLP GWEEA+ +GK YYIDH ++ TSWIDPRDR KP TFADCI ELP+GWEE D +G YF DHN + Q+EDPR QW EQ+ ML DYL+ + + AQ+ + VKQ+RL LAQ + L + + + S + ++YD LK +IA A+ RV LK+E+ ++ E++ ++ G L+KI++ +S + G Y++D A+ + +++ + GE+EK +++ L +D +R+D ++ S +SL S+ + Q ++GS +N+N K +LR Y+ A R+ L+ L L+ E+ RL L NEK++L E++ T+ LE + L +L + RD +K + +R +L + R L L E TRQ L
Sbjct: 1 MPRPE-----LPLPEGWEEARDFDGKVYYIDHTNRTTSWIDPRDRYTKPLTFADCISDELPLGWEEAYDPQVGDYFIDHNTKTTQIEDPRVQWRREQEHMLKDYLVVAQEALSAQKEIYQVKQQRLELAQQEYQQLHAVWEHKLGSQVSLVSGSSSSSKYDPEILKAEIATAKSRVNKLKREMVHLQHELQFKERGFQTLKKIDKKMSDAQGSYKLDEAQAVLRETKAIKKAITCGEKEKQDLIKSLAMLKDGFRTDRGSHSDLWSSSSSLESSSFPLPKQYLDVSSQTDISGS-FGINSNNQLAEKVRLRLRYEEAKRRIANLKIQLAKLDSEAWPGVLDSERDRLILINEKEELLKEMRFISPRKWTQGEVEQLEMARKRLEKDLQAARDTQSKALTERLKLNSKRNQLVRELEEATRQVATL 419 HSP 2 Score: 87.4261 bits (215), Expect = 3.850e-17 Identity = 57/184 (30.98%), Postives = 101/184 (54.89%), Query Frame = 1
Query: 2095 VYPAVSNESVAADSGVFEASQHGNRHHKVSVTRQDSGHSSGVYCSE-DSIETAQVRIGLEYKSQDGKLVISVGKGRNMKALCFEQVRQIFLKGRLLPSTDSS-LRFKTRRAELSNQPSFNQQFLFKIDRNKLSNKVLQLDVHADVIDTGKEECLGSVQISLADFDYNQQNTMKWYNLLSSSFME 2640
V AVS+ESVA DSGV+EAS V R + ++ E +++ +++I L+Y ++ + I + + N+ AL +Q +++ ++ +LP ++S+ F+TR + S+ FN+ F + L K L++DV + EECLG QISLA+ + + + +WYNLLS +++
Sbjct: 618 VSAAVSDESVAGDSGVYEAS----------VQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV-CTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLSYKYLK 790 The following BLAST results are available for this feature:
BLAST of TCONS_00046516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.