TCONS_00046516-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046516-protein
Unique NameTCONS_00046516-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046516-protein ID=TCONS_00046516-protein|Name=TCONS_00046516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=801bp
MPRPRNGVIPKPLPAGWEEAKTNEGKFYYIDHNSQKTSWIDPRDREIKPK
TFADCIGKELPIGWEECQDDVIGTYFTDHNAENNQLEDPRQQWHEEQQIM
LGDYLLRTKLDIEAQQNLVNVKQRRLRLAQNKVDYLEGLERQHFETNSSQ
MSPAKARYDSHQLKFDIANARERVGNLKKELHNVSDEVRHQQEGHDRLEK
INETLSSNGPYQVDTAREKVTVMNDVREQLLLGEQEKIHILQDLLRQRDE
YRSDIAGYNQKAGSCTSLNSTGSNGQLSMNGSEENVNTNKRQLRKDYQLA
LHRVQKLQAGLELLNHHLRNTQNGPEQHRLALYNEKQQLFTELQRCDEYI
KTEEARMHLESEKDLLSNELISMRDVSTKVIEDRNRLENDRKILETHLAE
KTRQTNLLEMKLKSLSTSTLSVSSTSSRGSLSTGSRGSLSASSRGSLNSL
GLYGSDMTNGVDHYSSGLCHAPSTACPPIYEQSIYSSRGETTEGLSMTYD
QQNGHQSMSNSRVSLTSISPPISPLTAPISYTDVANLRRPIHPAGSNERL
HKSAEDGLNHYSNPVNQYQFMMGSNSDLSRSVYPAVSNESVAADSGVFEA
SQHGNRHHKVSVTRQDSGHSSGVYCSEDSIETAQVRIGLEYKSQDGKLVI
SVGKGRNMKALCFEQVRQIFLKGRLLPSTDSSLRFKTRRAELSNQPSFNQ
QFLFKIDRNKLSNKVLQLDVHADVIDTGKEECLGSVQISLADFDYNQQNT
MKWYNLLSSSFMESQRNPSSSSLGRSISSVXWKVNGTLLHHLSVALYHPY
H
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029692XLOC_029692Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046516TCONS_00046516Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR000008C2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableCOILSCoilCoilcoord: 384..404
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
NoneNo IPR availableGENE3D2.20.70.10coord: 57..100
e-value: 1.6E-7
score: 30.4
NoneNo IPR availableGENE3D2.20.70.10coord: 13..44
e-value: 2.7E-13
score: 49.3
NoneNo IPR availableCDDcd00201WWcoord: 14..44
e-value: 2.4102E-10
score: 55.997
IPR001202WW domainSMARTSM00456ww_5coord: 12..44
e-value: 2.8E-11
score: 53.5
coord: 59..91
e-value: 2.4
score: 13.1
IPR001202WW domainPFAMPF00397WWcoord: 13..42
e-value: 1.6E-10
score: 40.8
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 17..42
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 58..91
score: 10.384
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 11..44
score: 17.358
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 58..93
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 11..43
IPR000008C2 domainSMARTSM00239C2_3ccoord: 647..752
e-value: 0.0012
score: 28.1
IPR000008C2 domainPFAMPF00168C2coord: 647..756
e-value: 1.3E-6
score: 28.5
IPR000008C2 domainGENE3D2.60.40.150coord: 631..758
e-value: 2.2E-17
score: 62.7
IPR000008C2 domainSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 629..759

Blast
[Close]
BLAST of TCONS_00046516-protein vs. Swiss-Prot (Human)
Match: WWC2 (Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 1.555e-71
Identity = 174/482 (36.10%), Postives = 266/482 (55.19%), Query Frame = 0 
Query:    1 MPRPRNGVIPKPLPAGWEEAKTNEGKFYYIDHNSQKTSWIDPRDREIKPKTFADCIGKELPIGWEECQDDVIGTYFTDHNAENNQLEDPRQQWHEEQQIMLGDYLLRTKLDIEAQQNLVNVKQRRLRLAQNKVDYLEGL--ERQHFETNSSQMSPAKARYDSHQLKFDIANARERVGNLKKELHNVSDEVRHQQEGHDRLEKINETLS-SNGPYQVDTAREKVTVMNDVREQLLLGEQEKIHILQDLLRQRDEYRSDI-AGYNQKAGSCTSLNS--------TGSNGQLSMNG-----SEENVNTNKRQLRKDYQLALHRVQKLQAGLELLNHHLRNTQNGPEQHRLALYNEKQQLFTELQRCDEYIKTEEARMHLESEKDLLSNELISMRDVSTKVIEDRNRLENDRKILETHLAEKTRQTNLLEMKLKSLSTSTLSVSSTSSRGSLSTGSRGSLSASSRGSLNSLG---LYGSDMTNGVD 462
            MPR R G    PLP GWEEA+  +GK +YIDHN+++TSWIDPRDR  KP +FADC+G ELP GWE   D  IG Y+ DH  +  Q+EDPR+QW  EQ+ ML DYL   +  +  Q+ L +VK++RL LA ++   L     E+    T+    S +  +YD   LK +I+  R RV  LK+EL  +  E+ ++++G + L++I++ +S     Y++  A+  +T +  +R+ +  GE+EK  ++Q L + ++ +  D   G ++    C+ +NS          +  Q S++G     S  N+   K +L   Y+ A   +  L+  L  L+          E+ +L L NEK++L  ELQ      +T++    LE+E+  L  EL+S+R   ++ + +R RLE  RK L   L E T+ T  L  +LKSLS ++    S+ S       SRGSL+ SSRGSLNSL    LY S  ++ +D
Sbjct:    1 MPR-RAGSGQLPLPRGWEEARDYDGKVFYIDHNTRRTSWIDPRDRLTKPLSFADCVGDELPWGWEAGFDPQIGVYYIDHINKTTQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEKSSSHTSLFSGSSSSTKYDPDILKAEISTTRLRVKKLKRELSQMKQELLYKEQGFETLQQIDKKMSGGQSGYELSEAKAILTELKSIRKAISSGEKEKQDLMQSLAKLQERFHLDQNIGRSEPDLRCSPVNSHLCLSRQTLDAGSQTSISGDIGVRSRSNL-AEKVRLSLQYEEAKRSMANLKIELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFVTPQKRTQDELERLEAERQRLEEELLSVRGTPSRALAERLRLEERRKELLQKLEETTKLTTYLHSQLKSLS-ASTLSMSSGSSLGSLASSRGSLNTSSRGSLNSLSSTELYYSSQSDQID 479

HSP 2 Score: 105.916 bits (263), Expect = 3.114e-23
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 0 
Query:  582 VYPAVSNESVAADSGVFEASQHGNRHHKVSVTRQDSGHSSGVYCSEDS--IETAQVRIGLEYKSQDGKLVISVGKGRNMKALCFEQVRQIFLKGRLLPS-TDSSLRFKTRRAELSNQPSFNQQFLFKIDRNKLSNKVLQLDVHADVIDTGKEECLGSVQISLADFDYNQQNTMKWYNLLSSSFMESQRN 767
            V  AVS+ESVA DSGV+EA             +Q S      Y  ED   +ETAQV+IGL Y ++    ++ + + RN+ A       +++ +  +LPS TD S  F+T+    +    FN  F   I +  L  K L++D+   V    +EECL   QISLAD  ++ +    WYNLL S  M  ++N
Sbjct:  658 VSAAVSDESVAGDSGVYEA-----------FVKQPSEMEDVTYSEEDVAIVETAQVQIGLRYNAKSSSFMVIIAQLRNLHAFLIPHTSKVYFRVAVLPSSTDVSCLFRTKVHPPTESILFNDVFRVAISQTALQQKTLRVDL-CSVSKHRREECLAGTQISLADLPFSSEVFTLWYNLLPSKQMPCKKN 834
The following BLAST results are available for this feature:
BLAST of TCONS_00046516-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WWC21.555e-7136.10Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2[more]
back to top