TCONS_00046497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046497
Unique NameTCONS_00046497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046497 ID=TCONS_00046497|Name=TCONS_00046497|organism=Clytia hemisphaerica|type=transcript|length=2050bp
TTTTAAACGATCGATAGATCTATAATGGCTTTGCAGGGCAAGGGCGCCAG
GCTTCCCAGAGGAAGCCATCCTTGAGGATGGCTAACTGCCATCCCGCATA
CCCGCAAGCACCTAGAGGTAGACCTTCatggaaacaaaaaataaaacacc
TAACACCTGTAACATATTAAAACatagaaattaaaataaataccACATAA
ATGGATACAAACTGGTCTGCTGGTCATGGATGGTCTGGTCTGGGTcacag
aaaaattaaaattttatgaCGATAAAATCTCCGCCAGATAAATACTGGAA
ATCCGCTATgacttttaagaaataaaagCCATAGCTCAAACCCACATCGA
CCTCATTTCGCTTTCTCGCAATAAAAAACAAGATGTCTAACAAATGCATT
CTAAGGCCCAGTGAATACTGCTTCTGATGATACCAGTGTTTGATAACGAT
CTTCCAACTAACAGAATGTTGTGAAGAGGATACCTTATACCAACCATTAT
AGCTGAAAGAAATATCCATATTAACTTTGACGGGAACAATGGAAGAACAA
AGCAGATGCACTAGACAAGATACTATTAGCTCTAAACCCAGATAATTGAG
TGGGTCGAACACTTAGCTGCCACCAATCACTGAGTAGTGTTGTAATGTTC
ACGAGAATAACTTGCTCCAGAACTGTTGCTACATTCCTGTTTAGTAAATG
GATAGTTAAAGGATTTCAGGTTAAAACCTTAAAGTCATATCCCGTACCTC
CTGTATGGTTGAATACAAATTTGTTCATATGATTCAATTTTATGTCTCTC
ACTGATGGATAGGAGAGTTCATATATGGACCCTGAAAGTAGATTTTCTCC
AAAATGAGTGTTACATGACTTTTATGAACATTTTCAGTCTGTTGATAATG
CATTGCAACCAACGTAACTGTCATTTATTTGGTACACTTTGAGTTGCGAC
TAATTAACATGATAAAGACTAAACTCTATGTATGCAGCATTGAGGCTTCA
ACCAATAATATTGGATGGCTATTCTTGTTTCCATAACGTGGATTTATCTT
TAGTGATTCATTAAAGTTTTTGCATGTTTCATATTCaaaatatgtatttt
ttctGAAGAAACATTTTTTCCAGAAATAATATATGCATTTCATTTCTTTC
TTACTTTGAGATTTCTTATCTTATAATGGGAGTCCTGTCCTGTCCCTCGA
TTGTTGCTAGATAGATTGATAAAGGACAGTCCTTGATAGCTAACTCTAGT
TAGATGGTCTCTGGGttggaaaaagttttctttctaACTTCTGATCCAAC
ACCTGTAAAAATTTGGCTGGAATCCAGGTATTACCTAAGGCCTATAATTT
CGACGTCATCTAACATTCCATTGGGCTGATCTCGTCGCCGATCTGAAGTA
CTTCGTAAGTTCTGTGTTAAAGATGATTATTGTTACAAGACAGGCCCTAG
TAGTATGTATACATACAGGTATAGTACTTAGCGATGCATACCACTGATTT
CACATTTATTCATGTACTAGATACTCTAATCGAGTTAGTAAATTTTGCCG
TTGTAGCTTCCCACTAATATAGACTCGAAAAATTCCGATGATACTTGCGT
CTTCAATGACAGGACATGTTGTTTGATAGCAACAGCCTGTAGAATCTTCC
CTGACTTTGCAAAGTCCAGGCAGATGGATTCATAGTAAACAATTTCCTAT
TCTCCTGTAGTCTTGTCTTGGTTCCCTGTTCCCTAGACTTCTTTTGACCT
TTAAAGGCTACAAATTTGTTTTTCTTTGCAAATATTAAGTCGAATTGAAG
TGCCCGAAGGGAGTCACTTGAACAATTAGTATGGGAGTTTCGGCAACAAG
GTCATTATTATTGTAAATAAGTATTTGAGGTCTCAGATAGGAGGAGTTAT
CGGGTCAACTTAAAAAGTGTCGTGCGTGTCAATTTTGTGTGGAACAAGAT
GGTTATTCTACCTTGGGCTTTGAAGAGAGGTCGATGTGGGTTTGAGCTAT
GGCTTTTATTTCTTAAAAGTCATAGCGGATTTCCAGTATTTATCTGGCGG
Run BLAST on NCBI

transcript from alignment at scaffold_113:3069..8546+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046497 ID=TCONS_00046497|Name=TCONS_00046497|organism=Clytia hemisphaerica|type=transcript|length=5478bp|location=Sequence derived from alignment at scaffold_113:3069..8546+ (Clytia hemisphaerica)
TTTTAAACGATCGATAGATCTATAATGGCTTTGCAGGGCAAGGGCGCCAG
GCTTCCCAGAGGAAGCCATCCTTGAGGATGGCTAACTGCCATCCCGCATA
CCCGCAAGCACCTAGAGGTAGACCTTCatggaaacaaaaaataaaacacc
TAACACCTGTAACATATTAAAACatagaaattaaaataaataccACATAA
ATGGATACAAACTGGTCTGCTGGTCATGGATGGTCTGGTCTGGGTcacag
aaaaattaaaattttatgaCGATAAAATCTCCGCCAGATAAATACTGGAA
ATCCGCTATgacttttaagaaataaaagCCATAGCTCAAACCCACATCGA
CCTCATTTCGCTTTCTCGCAATAAAAAACAAGATGTCTAACAAATGTAAG
TAATAATGTTTATGATTTTTAATCTAGATTTATCGTACGAATCATACTAT
TTGAAGCAGTGAGCTTAATGACTTTTCTTTCTATCGTTACTCGATAGGGG
ATTAAATGCTTATTAATGTTCCATATTTCGGTGGATACTAGATAGAGCAA
CATAACTCCAAGCAATATTTGTTTGTTTCAAAAATTGGTTTAGTTAGCAC
TAATTGTGGTCGTAAATCACCCTTCACCTAGTTTGTAGATGGGGTTAGGA
CAACATTAGCATGAAGAGTCTTAGATTATCACAAGACAGGCTTTACAAGA
AACTTTCTGTCCATTACGGGACAGAGAGGGGCTGATACACCTTGCTGTCA
TTTATGTGACAGAGAGAGGGCTGATACNCAACATTAGCATGAAGAGTCTT
AGGTTATCACAAGACAGGCTTTACAAGAAACTTTCTGTCCATTACGGGAC
AGAGAGGGGCTGATACACCTTGCTGTCATTTATGTGACAGAGAGANGAAG
GTTCTATATAGTAGTATATAATCATAAAGAACTTTGCTGTCATTACAGGA
CGGAGAGATTCTATATAGTATATAATCATAAAGAACCTTGCTGCCATTAT
GTGACAGAGAGATTCTTTATAGTAGTATATAATCATAAAGGACTGATACA
ATAGCATTTCAGANTATATAGtatatcatcataaagaacTTTGCTGTCAT
TACGTGACAGAGAGATTCTATATAGTATATAATCATAAAGAACTTTGTTG
TCATTACGTGACAGGGAGATTCTATATTGTATATATATTCATAAAGAACT
TTGCTGCCATTACGTGACAGAGAGATTCTATATAGCATATCATCATAAAG
AACTTTGCTGTCATTATGTGACGAAGATTCTATATAAtatatcatcataa
agaacTTTGCTGCCATTAGCATTACGTGACAGAGAGATTCTATATAGTAT
ATAATCATAAAGAACTTTGCTGTCATTACATGACAGAGAAGGTTCTATAT
AGTAGTATATAATCATAAAGAACTTTGCTGTCATTACAGGACGGAGAGAT
TCTATATAGTATATAATCATAAAGAACCTTGCTGCCATTATGTGACAGAG
AGATTCTTTATAGTAGTATATAATCATAAAGGACTGATACAATAGCATTT
CAGACTAGTGGTTTTCATTTTACTACTTATAAAAACCTTGTTGCCATTAC
ATGACAGAGAGAGGaatattgaatagtacttttgaTCAGTTCATAGTTTA
AACTCTTCATCATTATAGATAAACTTGCTGTCGTTAAGTGACAGAGAGAG
CTGATACGATTCTGTTTTCTGAGAGTTGAATTTATTTTACCATTATGAAG
GACCTTTGTTGTCATTGAGTGAGAGAGGAACAAATCAAGAATATCCAGTA
CTGTATAAGTTTAATTTATATTATCATGATAAAGACCCTGATGTCAATAT
GACAGAGAGGGAGGGCNGGGATTCTATATAGCATATCATCATAAAGAACT
TTGCTGTCATTATGTGACGAAGATTCTATGTAGtatatcatcataaagaa
cTTTGCTGCCATTAGCATTACGTGACAGAGAGATTCTATATAGTATATAA
TCATAAAGAACTTTGTTGTCATTACGTGACAGGGAGATTCCATATTGTAT
ATATATTCATAAAGAACTTTGCTGCCATTACGTGACAGAGAGATTCTATA
TAATATATCATCATAAAGAACTTTGCTGTCATTATGTGACGAAGATTCTA
TATAATATATCATCATAAAGAACTTTGCTGCCATTAGCATTACGTGACAG
AGAGATTCTATATAGTATATAATCATAAAGAACTTTGCTGTCATTACATG
ACAGAGAAGGTTCTATATAGTAGTATATAATCATAAAGAACTTTGCTGTC
ATTACAGGACGGAGAGATTCTATATAGTATATAATCATAAAGAACCTTGC
TGCCATTATGTGACAGAGAGATTCTTTATAGTAGTATATAATCATAAAGG
ACTGATACAATAGCATTTCAGACTAGTGGTTTTCATTTTACTACTTATAA
AAACCTTGTTGCCATTACATGACAGAGAGAGGAATATTGAATAGTACTTT
TGATCAGTTCATAGTTTAAACTCTTCATCATTATAGATAAACTTGCTGTC
GTTAAGTGACAGAGAGAGCTGATACGATTCTGTTTTCTGAGAGTTGAATT
TATTTTACCATTATGAAGGACCTTTGTTGTCATTGAGTGAGAGAGGAACA
AATCAAGAATATCCAGTACTGTATAAGTTTAATTTATATTATCATGATAA
AGACCCTGATGTCAATATGACAGAGAGGGAGGGCCGTTGCAGTACAATAT
TTCAAATTACAGTTGTAGTTGAATGTCTTGTACCATTTGTATCATTATTA
GGAGCCTCGCTGTCATTACATGATGAGGATTATACAGTAAAATGTCAATC
TAGTTGAATTTCTTTACCTTGCTGTCAATATGTGACAGAGAGgaacaata
caataaaaaatttctatatTAGTTGAATTAAGTTGAAGATCTTGCAGTAA
TTACCTGACAGAGATTTTACATAAAAATTCCCaatcttgaatttcttttt
atataaattaaaattaattttcttccaTATCAAATTGTTGGTGAAACACA
AGATGGGGTGTAAAAATTTACTGATACAATCCTTTTCTGTTACAAAATAT
AGAGGGACCGGATTTaatacaaaaatcttttcaacaaagtgaaattttct
tcaCATATGATATGGTTTAAATACCATCCTTAAGTGTTAATCTGGCACTG
TAGATATCTGTGTACTGCAGTTTCTGtccaaatccttaaaatttgggTTA
CCTATGGCCCGGTAGATTTGTTTAAAATTACCTCTTCCTTTCTTGATAAG
AATTGAGTCGAGAAATACTATTTGCAATACTCAGTATTTATTCAAGGATT
TCTTTCTCCTTCGGTTGACGTTATTTGACATTTATTGCTTCTGTCGATGT
CAAATAATTATCTTTCTCATTGCATGGGGGTGATATCAACATTCATTTAA
ATTACCCTTCAATTGTCTGCCATTGCAGATGGTTTGAACTTAATACacaa
aaaagattctttccCTTCCATATTTTTTGGGAAGACTACCAACATTAACT
tttaattttaatgttttatttcaCATATTTTTTCTAGGCATTCTAAGGCC
CAGTGAATACTGCTTCTGATGATACCAGTGTTTGATAACGATCTTCCAAC
TAACAGAATGTTGTAAGTTTCACAGTTTATCATATGAATTTATGTTTGCA
CCTTCAATAGACTGACGATTCTTTATTATATCTCAAGATGCGGCTTGAAG
CTTTATTTTTCACACATACATGTCCATGGGATAGGTGGATTGTTTACTAT
CAACATCAATACATCAACATCAATAGATGAGAATCACTGAGTTTTATTCA
GTCATGTGATTAGATGTACTGACATAAAGCTTCTTTGATTATTTGTAGGT
GAAGAGGATACCTTATACCAACCATTATAGCTGAAAGAAATATCCATATT
AACTTTGACGGGAACAATGGAAGAACAAAGCAGATGCACTAGACAAGATA
CTATTAGCTCTAAACCCAGATAATTGAGTGGGTCGAACACTTAGCTGCCA
CCAATCACTGAGTAGTGTTGTAATGTTCACGAGAATAACTTGCTCCAGAA
CTGTTGCTACATTCCTGTTTAGTAAATGGATAGTTAAAGGATTTCAGGTT
AAAACCTTAAAGTCATATCCCGTACCTCCTGTATGGTTGAATACAAATTT
GTTCATATGATTCAATTTTATGTCTCTCACTGATGGATAGGAGAGTTCAT
ATATGGACCCTGAAAGTAGATTTTCTCCAAAATGAGTGTTACATGACTTT
TATGAACATTTTCAGTCTGTTGATAATGCATTGCAACCAACGTAACTGTC
ATTTATTTGGTACACTTTGAGTTGCGACTAATTAACATGATAAAGACTAA
ACTCTATGTATGCAGCATTGAGGCTTCAACCAATAATATTGGATGGCTAT
TCTTGTTTCCATAACGTGGATTTATCTTTAGTGATTCATTAAAGTTTTTG
CATGTTTCATATTCaaaatatgtattttttctGAAGAAACATTTTTTCCA
GAAATAATATATGCATTTCATTTCTTTCTTACTTTGAGATTTCTTATCTT
ATAATGGGAGTCCTGTCCTGTCCCTCGATTGTTGCTAGATAGATTGATAA
AGGACAGTCCTTGATAGCTAACTCTAGTTAGATGGTCTCTGGGttggaaa
aagttttctttctaACTTCTGATCCAACACCTGTAAAAATTTGGCTGGAA
TCCAGGTATTACCTAAGGCCTATAATTTCGACGTCATCTAACATTCCATT
GGGCTGATCTCGTCGCCGATCTGAAGTACTTCGTAAGTTCTGTGTTAAAG
ATGATTATTGTTACAAGACAGGCCCTAGTAGTATGTATACATACAGGTAT
AGTACTTAGCGATGCATACCACTGATTTCACATTTATTCATGTACTAGAT
ACTCTAATCGAGTTAGTAAATTTTGCCGTTGTAGCTTCCCACTAATATAG
ACTCGAAAAATTCCGATGATACTTGCGTCTTCAATGACAGGACATGTTGT
TTGATAGCAACAGCCTGTAGAATCTTCCCTGACTTTGCAAAGTCCAGGCA
GATGGATTCATAGTAAACAATTTCCTATTCTCCTGTAGTCTTGTCTTGGT
TCCCTGTTCCCTAGACTTCTTTTGACCTTTAAAGGCTACAAATTTGTTTT
TCTTTGCAAATATTAAGTCGAATTGAAGTGCCCGAAGGGAGTCACTTGAA
CAATTAGTATGGGAGTTTCGGCAACAAGGTCATTATTATTGTAAATAAGT
ATTTGAGGTCTCAGATAGGAGGAGTTATCGGGTCAACTTAAAAAGTGTCG
TGCGTGTCAATTTTGTGTGGAACAAGATGGTTATTCTACCTTGGGCTTTG
AAGAGAGGTCGATGTGGGTTTGAGCTATGGCTTTTATTTCTTAAAAGTCA
TAGCGGATTTCCAGTATTTATCTGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029681XLOC_029681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046497-exon-scaffold_113-1491911889:3069..3463TCONS_00046497-exon-scaffold_113-1491911889:3069..3463Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1510915933:3069..3463TCONS_00046497-exon-scaffold_113-1510915933:3069..3463Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1575043694:3069..3463TCONS_00046497-exon-scaffold_113-1575043694:3069..3463Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1491911889:6656..6730TCONS_00046497-exon-scaffold_113-1491911889:6656..6730Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1510915933:6656..6730TCONS_00046497-exon-scaffold_113-1510915933:6656..6730Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1575043694:6656..6730TCONS_00046497-exon-scaffold_113-1575043694:6656..6730Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1491911889:6967..8546TCONS_00046497-exon-scaffold_113-1491911889:6967..8546Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1510915933:6967..8546TCONS_00046497-exon-scaffold_113-1510915933:6967..8546Clytia hemisphaericaexon
TCONS_00046497-exon-scaffold_113-1575043694:6967..8546TCONS_00046497-exon-scaffold_113-1575043694:6967..8546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:3069..8546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289064	0.300675	0.0654585	0.149429	15.6447	11.11	6.83812	7.65428	5.13159	4.79901	3.33861	3.5166	2.46076	2.47567	1.17086	1.32698	1.57686	1.52726	1.70029	2.50807	3.18611	2.67191	1.96651	2.47084	1.05521	1.99429	7.55733	5.30172	4.3634	3.13808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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