TCONS_00046492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046492
Unique NameTCONS_00046492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046492 ID=TCONS_00046492|Name=TCONS_00046492|organism=Clytia hemisphaerica|type=transcript|length=572bp
TGACGATCAAAATCAACAACcagaatgacgtcatcatacgATTTATGTTT
TGCTGTTATGATTTCATCACAATCCTTATCATCCAGCCCCATGAGGTACA
AATGGTTTCGTGGATTATAAGGTGTCAAAAATTTCACATCTTTGAACATT
TTCATTTCGTCCAGTTTTTCTAACCAATCCCTGATGATTCGATTTTTTAG
ATAAAATGATGGCGGAAAATGTCGCTCCCCTGCGACTGTGTTTTCCTTAA
AATACTGTAACGATCTTTCTCTAAAGTCGGCAACAGTCTTCGTAATGCTT
GGACCAGTTCGTATCGGTTTACATTCTTGTTCCTCTGTTATGGGTTTTGT
TGGTTTGTAATGATGAACATCATCATCCACTCCAGAGTTGTGTGTGTAGA
TCAATGTTTTATCAACGGTGAAAGTTCTTTGGCCGTGCGTCATATCTAAG
GTAAAATCATAATCCATTAAAAGTCATTGTTTTATTATTACATTAAGTGC
TTGTATAAAAGAACTCCATttgttaatttcgcatagcgaaagtactcttg
tctcccgaatagataccccccg
Run BLAST on NCBI

protein sequence of TCONS_00046492-protein

>TCONS_00046492-protein ID=TCONS_00046492-protein|Name=TCONS_00046492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MDYDFTLDMTHGQRTFTVDKTLIYTHNSGVDDDVHHYKPTKPITEEQECK
PIRTGPSITKTVADFRERSLQYFKENTVAGERHFPPSFYLKNRIIRDWLE
KLDEMKMFKDVKFLTPYNPRNHLYLMGLDDKDCDEIITAKHKSYDDVILV
VDFDR
Run BLAST on NCBI

transcript from alignment at scaffold_112:15219..15790

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046492 ID=TCONS_00046492|Name=TCONS_00046492|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at scaffold_112:15219..15790 (Clytia hemisphaerica)
cggggggtatctattcgggagacaagagtactttcgctatgcgaaattaa
caaATGGAGTTCTTTTATACAAGCACTTAATGTAATAATAAAACAATGAC
TTTTAATGGATTATGATTTTACCTTAGATATGACGCACGGCCAAAGAACT
TTCACCGTTGATAAAACATTGATCTACACACACAACTCTGGAGTGGATGA
TGATGTTCATCATTACAAACCAACAAAACCCATAACAGAGGAACAAGAAT
GTAAACCGATACGAACTGGTCCAAGCATTACGAAGACTGTTGCCGACTTT
AGAGAAAGATCGTTACAGTATTTTAAGGAAAACACAGTCGCAGGGGAGCG
ACATTTTCCGCCATCATTTTATCTAAAAAATCGAATCATCAGGGATTGGT
TAGAAAAACTGGACGAAATGAAAATGTTCAAAGATGTGAAATTTTTGACA
CCTTATAATCCACGAAACCATTTGTACCTCATGGGGCTGGATGATAAGGA
TTGTGATGAAATCATAACAGCAAAACATAAATcgtatgatgacgtcattc
tgGTTGTTGATTTTGATCGTCA

Coding sequence (CDS) from alignment at scaffold_112:15219..15790

>TCONS_00046492 ID=TCONS_00046492|Name=TCONS_00046492|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_112:15219..15790 (Clytia hemisphaerica)
ATGGATTATGATTTTACCTTAGATATGACGCACGGCCAAAGAACTTTCAC
CGTTGATAAAACATTGATCTACACACACAACTCTGGAGTGGATGATGATG
TTCATCATTACAAACCAACAAAACCCATAACAGAGGAACAAGAATGTAAA
CCGATACGAACTGGTCCAAGCATTACGAAGACTGTTGCCGACTTTAGAGA
AAGATCGTTACAGTATTTTAAGGAAAACACAGTCGCAGGGGAGCGACATT
TTCCGCCATCATTTTATCTAAAAAATCGAATCATCAGGGATTGGTTAGAA
AAACTGGACGAAATGAAAATGTTCAAAGATGTGAAATTTTTGACACCTTA
TAATCCACGAAACCATTTGTACCTCATGGGGCTGGATGATAAGGATTGTG
ATGAAATCATAACAGCAAAACATAAATcgtatgatgacgtcattctgGTT
GTTGATTTTGATCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029676XLOC_029676Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046492-proteinTCONS_00046492-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046492-exon-scaffold_112-1491911889:15219..15790TCONS_00046492-exon-scaffold_112-1491911889:15219..15790Clytia hemisphaericaexon
TCONS_00046492-exon-scaffold_112-1510915933:15219..15790TCONS_00046492-exon-scaffold_112-1510915933:15219..15790Clytia hemisphaericaexon
TCONS_00046492-exon-scaffold_112-1575043694:15219..15790TCONS_00046492-exon-scaffold_112-1575043694:15219..15790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_112supercontigscaffold_112:15219..15790 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.165064	0.224631	0	0	0.208302	0.42274	0.588177	0.341159	2.25405	0.970509	1.22115	6.73198	5.51174	3.69588	5.02199	2.37676	5.41995	5.0592	4.58316	3.96269	4.09518	4.15849	3.05563	10.7775	6.03115	25.0362	17.3849	16.8837	19.3131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top