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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046491 ID=TCONS_00046491|Name=TCONS_00046491|organism=Clytia hemisphaerica|type=transcript|length=1183bp
CTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAACCAAAAACAA
GAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGGCGGTCCCGA
AAGATGGAATCGCCATGATTCTAGATCTTCAAATGCAAATTCCTTTGGAT
TTCTTCGACAGAACAAGAAagCTGACCATCGCTGGTAAAACAGCCTTTTC
TCCGACTCTAATGCACTTTCAAGATCCTTGCCTCCACGAACGCTACACTG
AGCTAGCTCTGAAGAAAGTCATCTGGCAATATGATGGGCCTGGTATCATG
GCTATGTATAAATCTGATTGGTCAAGGGTAGGAGGTTTCAACGAGAAGAT
GTTTGCAGACAAATGGGGTGGTGAGGATTGGGAACTAGTTGATCGTATCA
TAGCAACAGGGATACAAATCATCCATTATCGATTGCCACGTTTTTATCAT
TTGTACCATTCACGTAAAAAAATGTGGAACCATTGAGAAAGATTGTGGAT
GTTTCAAAGGATAGGAAGTGTTCCAACTCCTTCCTGCACTTCCGTCATTC
GAAATGTTGAACAGCACAAGTACAACTTTTGAACTTCTGGTTCAATGATG
GTCGTTTCCAGTGGTGTATTCGCAGAACTTGCTTCGTGGACATACTACGT
GGTCACACTATAACCAATGAGAAATTGCAAAGTTTAAGACATCACTTTCT
CTCGTCTGGGAAGGTCATGTCTCATCAACGAGAGCCTATGCTGCTGttct
ttcaaatttcatttttatttttttggtagCTGCATAAAAAATCATCAGTG
TAACCAGAGCTCTCTTATAAGAAGCAGCAAACTGTTTTGAGGCttagctg
ttcttattttttggcactatGAACCTTAAGATATTCTGATCCTGCTCTTG
TTTTAGGGAAAATTTAAATATCAttcttcttaaattgttcttaacatttg
aCGCTTTAAAGTTTCATTGTTGTATTGAAAGATAAGGAGTGCATTCAGAT
TGGATTTCCCCGAGTTCTCGTTAGGTTTATTTTAGGTGTTTTAAAAtcca
ttttgtttttctgactattttattttttataagatttctAAGATTTACCC
AGATGAAACATATAGCAAATTTAACCAGATTTTATTTATATagatatttt
ataattttaattcCTATTATTTTATTGACAGAG Run BLAST on NCBI protein sequence of TCONS_00046491-protein >TCONS_00046491-protein ID=TCONS_00046491-protein|Name=TCONS_00046491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
LESTKDVPSKYILTKNKKFSKVKILNEGLKAVPKDGIAMILDLQMQIPLD
FFDRTRKLTIAGKTAFSPTLMHFQDPCLHERYTELALKKVIWQYDGPGIM
AMYKSDWSRVGGFNEKMFADKWGGEDWELVDRIIATGIQIIHYRLPRFYH
LYHSRKKMWNH Run BLAST on NCBI transcript from alignment at scaffold_112:39980..47491- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046491 ID=TCONS_00046491|Name=TCONS_00046491|organism=Clytia hemisphaerica|type=transcript|length=7512bp|location=Sequence derived from alignment at scaffold_112:39980..47491- (Clytia hemisphaerica)
CTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAACCAAAAACAA
GAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGGCGGTCCCGA
AAGATGGAATCGCCATGATTCTAGATCTTCAAATGCAAATTCCTTTGGAT
TTCTTCGACAGAACAAGAAAGGTTTGTTTTCATTTTTTAGATTGAAGAAA
CAATAAGATAGTGAAGGCTAGAAGCGTGAAGTCAACTCTTGTGTTATAAT
TTCTGAATTTAACGTAACTCTCCAGTTGTTTGACAATAATTGAATGTTAT
TGGACAAGTTTGCAAAATTTTTGACGTGTTTGTGTAAAGTAAAATGCTTT
ATTCTTTTCACTAAAGCTGACCATCGCTGGTAAAACAGCCTTTTCTCCGA
CTCTAATGCACTTTCAAGATCCTTGCCTCCACGAACGCTACACTGAGCTA
GCTCTGAAGAAAGTCATCTGGCAATATGATGGGCCTGGTATCATGGCTAT
GTATAAATCTGATTGGTCAAGGGTAGGAGGTAAAACCTATAGCTACAATC
ACCGCCTAAATACTTGGCAAAAAAGGGGAATTCCCTCCAAAACTTCAAAA
CCGCAAGTGATTTTTAAGTGCTTTAAAGTACAGCTGGAAAGTAGAGTAAG
TTTAAAACATTAGACTTAAAACTTACGTTACGACCTCAGGATCTCAGAAT
CTAAAGCTAAAAAATGTTCCAATATGGCTGAGAATATAGCCTGGATGTCA
CTTAACCCTTCCCAAATCAAAAATCCAATGAAACGGAGTGGAAGTACTGA
AATTGCAATCCTCGCTGGAGCTTTAAATTCTGAAACGTTAAACTACCCAA
AATTGCTAACATTTCGGCGCTTATTGTAGCTTAAGTAATGTTCGTCTATC
ACTAACGTTTTTCTTAGAGATTCTCTTTCAAATTGATTCCTAAGTAAGCG
AGTTTAGAATTTCTATCTTACTATTGCAGAATGTTTAGTGACTTCTTTCT
TCATATTTCTCGTGCAGGTTTCAACGAGAAGATGTTTGCAGACAAATGGG
GTGGTGAGGATTGGGAACTAGTTGATCGTATCATAGCAACAGGGATACAA
ATCATCCATTATCGATTGCCACGTTTTTATCATTTGTACCATTCACGTAA
AAAAATGTGGAACCATTGAGAAATGTATTTGTTTGCTTCTTTGATCTTTG
TTTATTTACAGGGAAAATGTTTTCTTTTTTACAAAATCCTACAAATTAAT
AGTTGAAAATTATTTACATTTTAGTTTAAAAAAAGGATATGCGTTTGTTC
GACAATTTGATATTTCTTCTGTTGTGTTGTGATGAGACGATTACCCGATT
GACGGCTTTGTTAAAGATTGTTCTGTTTTTCTTCTTTCAGTTTTTGAATC
TGTTCTTTGAGCTCTTCGTTTTCTTTCTTCAATTTTTCCATCTCTTCAAC
GATGAGACATTCTTTGTACCTTCTTGCTAACCGTGATCTTCTTGAAGCTT
CGTTGTTTTTGCGACGTCGTTCGAAGTATTCGGGGTTCTCGTGTGCTTGC
GTGTTGGTGTAGCGATGGCGACGCATGGAGGGCTTGGAAACGAGAGGTTT
GGGATTGAATTTGTACAAACGTTTGACTTTCTTGGTCTCGTGATCGTCGT
CTGAAGTATCGCTTTGTGAGAAAGAGAAATTGGTAGAATCACTGTGAAAT
GATGGTGTGTTTGTTGTGTCTGTGTTGTGAAATGTCGGGGAAGTGTTTTC
CGTGTGGTGGAATGTCGGGGAGGTGTTTTCCGCGTGGTGGAATGTCGGGA
AGGTGTTTTCCGTGTGGTGGAATGTCGGGGAGGTGTTTTCCGTGTGGTGG
AATGTCGGGGAGGTGTTTTCCGTGTGGTGGAATGTCGGGGAGGTGTTTTC
TGTGCAGAATGGTTGATGTGTGGTTACTGTTTGAGTTTGTTGGAAATGTT
GCCTGTCGTTGTTGTTATCGTGCGTGAAACATGTTTCAGTTGTAGAGGTT
GAGGGTGTTGCAGATGTGTTGTGTTGTTCCATAGCAATCAAGTATTGAAG
AATGTCTCGCTCGTTGACCTCTTTGTTGGTGTTTGTTGTCGAGGTTGTCA
TTGCTGTGAGGCTGGTTGTGAAAGAGCTACAGTCGTTGCTGTTGGTTTGT
GTAGTTGTTGGGAAGCTGCATGCACTGCTTGTATACGTTTCGATGTGAGA
GAAGGCGCTGCCTGTGGATGCAGTTTGGTTTTGATTAGACCTTATGATGT
CCGGAGAGTAACATATTGATTCTGTGACGATTTGATTGTTGTCTTGGGTG
AAGTCTTGTTGTGTTGNTATGTGAGAGAAGGCGCTGCCTGTGGAAGCAGT
TTGGTTCTGATTAGACCTTATGATGTCCGGAGAGTAACACATTGATTCTG
TGACGATTTGATTGTTGTCTTGGGTGAAGTCTTGTTGTGTTGTTGCAGAC
ATCATTTGTTGAGGATAGGATTGTGAAACGAAGTCTTCCATACTCATCTC
ACCATTGAAGATGTTCTTCTGGTCTGAATGAAAAAGAAAAATGAAGAAAG
TTAGTTCTAGTTGTTATCTGGATAGGAATCAAATCTTTATTGGTTTCTTT
GTCTTATAGTCGTTATGATTGTATGTTTATGATGAGACTTTTGGTTAGAG
GAAGATGTCAGTTCTTTTTGTACGCCTTAGTTAATGACATTCTTTATTAC
ACGAATATTTCTAGTCGTTTTATTAGCACGAAGTGAAAATTTCCTGTTAA
TAAAATCCCTCTTAATTAAAACCAGCCGTTGTTTCCTTGAAAAAGCAGAA
AAATCGTGTTAATTTCAGATCGTCCGAATTTCAAGGCCGTTGAATACTTG
CCTAGTAATATTCGTGTAATAATGTAGATTTTCGTGACATGTGTGAAACC
ACGTGGAGTGAACCATTGCAATGTCTATTGCCAGGTTATCCAGGTTATCC
AAGACGTGAGTAAAAAGGTATTGGTGAATTTAAAGCATCGGAAAGAATCA
TAAGAAAATAAGATAAAATATACTCACCCATAATCATGGCTCCTGTTTTG
ATTCTCTCTGTTTATATGTCTTTGGTGATTTGTCCGTAGAATGTGTGAAG
ATAAGGGGAATATGATTTTCAGATTTCAGTATTTTTCCTCTTATACTGAG
CTTCCACCCACACAGCCTACATGGTTTCTCCTCTGCTTGACCTCGATAAT
TATTCCAACATTTTCCTTCTTGCTAATTATTCCACGCGCATAATTAAGTG
CTCGCCCTCGAACGTTTGGTTAAAAATGTGAAGGCTTGCTAATTAGTGGG
TCATTAACGACGAGCTATTTTAATGAAGTGGTTTTTTATCAAAGACTGAA
GATAGATGACTCCCTTTAATGGTAATTATTATTATTATTTTGCCATCCGT
TCTCTGTAGATTGTATATCTTAGAATTTGAAAGATTCCATAGTGCAATTG
GAGAATGACCTTAAACTGACTGTTTAGACAACAGTTATGACCTGACCAAA
ATCATCAATTTCAGCCAATTTTGGAACTAAAATATTTAAAAACGTTATTT
TTTTACAGCACTCATCAAAGAGAAATGAGGCCTGCGCATTGAAATGATCG
TCTATTCCACGTTTCTATTGTAGTAAAAATGGATTTCTTTCATTTATCTT
TTGATTGAGTAATTTCAATTTAAGTTTCTGTTCTTGCTAAAGATTTCCAA
TGGTAGTTAACAATCAGTGGGTTCTGCATCATTTGCTGTGGTACACTCTT
TTGCATTCAAAAATATACCAATCTTTGCAAATTTTCCTCGAAACTATCGC
TAAAATAATAGCACAACGCACCGAATCTTAAAAGACGTAGTAACAAATCT
GCACAAGTTTTTTCGTTTTTACGACTTGCAATCCTATCTTCCTTTGCGTT
AATTACTCTTGCACGTTAATTAATATCAAAAGGTTTCTTTCACGGTTTTC
CAATCATTTCGAAATAATCTGTGGGATAGGAGCTCGTCCAAATTTCTAGT
TATAATTATGACCTGTGAGATGCGGAGCGCTATTATTCAATTTTAAGCAC
GCCGTAAAATTTATCTCTGATGCAGAAAATCGTGCACTGAAAACACTGCC
TCTGATATCAGAAAGTATATCCTTTGAGTTATTGTTAAGTAAGTCGGTTA
GTTAGTTTACGACCGCAGTCGAGGGCGACCTAAAGGCTCTCTTTTGGATA
GCTGTCTACCTGAAGGTAGGGGAGGTCGCCACTCCTTTCCCTGGATTTCT
CCACTTACCCTTGATCCGTCTCTTTAGTTGCTGAACATCAAGTAGAGAGA
CATCAAGTACCATTTTGGGAATCTTTGGTGTGACCGCTGGAGAGTCGAAC
CCAGAACCTTGCGCACAGTAGCTGGATACTCTACCTTCATGCTACGGTCA
TTAACTCGTTAACTTGGTAGCTCAGTCGGTTTCACGGGCGCCTTACAAAA
TACAAGGGTAATTCACTGAACAGGTTCGAGCCCTGGGGGCTACTATCGAA
ATCTTAGCATCGTTCCCTTCAAAGACGATGAATAAGAAAATAGCACATTT
CAACGTTGTCTCAAGGAGTTCTGCGATGAGATGTACATAAATCACCATGA
TTCAACCATGTAGATGTAAGGTGGTCTTCTACACTTCCGCATGGGTGATA
ACTCAACGGCATACTTATTTTTTTTATTGATTTCTCTTTTATCACCAAGA
TAATGGTGTATAACTTAGTGCAAGCTGACTATGGTAAAATAAATTTATTT
ACTTAAAAAAAGTCATGAAAAGGATTTCCTCTGGAATTACAGAAAAAGTG
ATTCAGAAATAAAATATAAGAACTGTTTTAGCTTAACACTTCCACGCTAA
AAACATGTCGGAATTGGAGCGTTCGATTTTTTTTCTCTTGACAAAGTAAA
GGACCATTAGTTTCACAAAAATAATCGATAGAAATTCTTATCTTTGCTCG
AAGCACTTTTTCTGTGACACGGTACTTAACATCTATAACTTTGATTGAAT
TAATTAGCGGGGTATAATACTTAAATATACTGCTATTTGTTGGAGATTGG
CATAATTATATAATTCTATTGTTTGTCGGTTTCGTATATTAAAAACTCGG
TTATCGTTTCTCGCCGACCTTGAGCAAGCAAGGAGATGTATGAGAGCCGC
CCACAAGCATAATTATCTCTCTGTTTACTTTCCATTGTCGTTAATTTATT
CGTTCGAACGCCTCTTCGACGGATGGGCCCGCGGATGGGTAGAATTAATT
AATTATGCAACAAGCATACTTGATTGTAGAATGCAATTAAGAGAGGTATT
GTTTTGCAGTGACGAAGGTTTTAATCACTGACTATCCCTTTTATGGTGTG
TTTCTTTTACGCTCCCACGAAATTTGTGCAGTGGGTGAACCGACGCTTTC
GGTTTTGGCCATCTCTTATCTTTTATCATTCGCTTTACATATTGGCGTGT
TTTTCCTTCTTTGCGTATAGATACAAGAACTCGGTGACAGCCTGCTTTGG
GTGCTTTTCTTGAGCCGCCCTTTTTGAGCGAAGCCGTGCCATTATTTTCG
ACAATAGAGCCCTCTCAAAGTGGTCTTGCTTATATTGGCGTGTCTTTACT
TTGGATTTTTACATCTTCATGCACTGGAATGTTAAAAGAGAGGGGCGAAT
GCTCGTGTATGTTTAAGGCTTTTCCTGCTTCAAAATAAGAGGGGTGAAAA
CTGTCTATCCTGTAAGGGCTCAGCTTTCACCGAGGTATATTGTGGAATCA
ATACCCAGCACAGTTACCGACAGGTTTCTTGATTTTATATCTTTCATATT
CGCCTTACATGAGATGGTTTGACCCGGGTGAAGGTACATTCACTTGTCTT
GCAAGTGAAAACGTATATATGAGTTTGTATATGATATTTCAGAGATGTTG
TAAAATTCAACTGCTGATAAACCAAGAAATTTACTTAAGTAATAGTGAAA
AAGATTTTCTCTGATTATTATATGTGTTGAAAATATTATGTATTTGGATT
ACATTAGCTTGTTTGTCATATTTTATTTTTGATTCAATGAATGATACAGT
TGCAAATCGTTTGTAATGAGGTTCGTAATTGATCGAGTGGTCGGTCCACG
TCATTCGTTGAGTAATTAATTAACTTCATTTCATCAACTAGTCATTTTGT
TACACAATCCTTCAATCAGCTTGTCGAGGTAAAAAGGAAGAAAATGTCGT
CCCTTCGTTTCATCTCTTACTCATTTTTTGTGATAAGTGCACGGTGTGTG
ACATCATCAACAAATTGTGTCAGGAATTACGTTAAACAGGGCAACATCGT
TGCTTTATTTCGAAAATGGTGGCAGATACCACTGTAAAAAAACTGCCATC
AAGGGAACATATAGTTGACCCTCGCTAACCTAAAATTTGGTGGGGATCTA
GTTTCGACATACAGATAGAGAGATTTAAATCATAGAAAATCCATCAAGGT
TCTGAGCCATGACAAAGAATTCTTTTGAATTTGTGGAAGGTATAGAATGC
AAACTCTGGTTTCTTTCGGATCTTTCGCAGACTACATTAGCGAATATAGA
GCTACTTTTTTTGAAACGATTCGGAACAACCCGCTGCTGTTTTAACGCGC
GCGATTGAGGACAGTTATAGTGCTATAGTGCATAAAGTCGCTACCGGTAA
GGTTCTAATTGGACTATATCCTGACCAATTGTGGACGACATTTTACGGGT
TAGATGTGCGGGTTACTCCAAATACATAAACTCGCTACTATTAATGTGAC
GCAGAGGTAAACACATGTACGACTCATTCATTTTAAGTTTTCACGCTAAA
ATATCTTCATCTCTTCACAGATTGTGGATGTTTCAAAGGATAGGAAGTGT
TCCAACTCCTTCCTGCACTTCCGTCATTCGAAATGTTGAACAGCACAAGT
ACAACTTTTGAACTTCTGGTTCAATGATGGTCGTTTCCAGTGGTGTATTC
GCAGAACTTGCTTCGTGGACATACTACGTGGTCACACTATAACCAATGAG
AAATTGCAAAGTTTAAGACATCACTTTCTCTCGTCTGGGAAGGTCATGTC
TCATCAACGAGAGCCTATGCTGCTGTTCTTTCAAATTTCATTTTTATTTT
TTTGGTAGCTGCATAAAAAATCATCAGTGTAACCAGAGCTCTCTTATAAG
AAGCAGCAAACTGTTTTGAGGCTTAGCTGTTCTTATTTTTTGGCACTATG
AACCTTAAGATATTCTGATCCTGCTCTTGTTTTAGGGAAAATTTAAATAT
CATTCTTCTTAAATTGTTCTTAACATTTGACGCTTTAAAGTTTCATTGTT
GTATTGAAAGATAAGGAGTGCATTCAGATTGGATTTCCCCGAGTTCTCGT
TAGGTTTATTTTAGGTGTTTTAAAATCCATTTTGTTTTTCTGACTATTTT
ATTTTTTATAAGATTTCTAAGATTTACCCAGATGAAACATATAGCAAATT
TAACCAGATTTTATTTATATAGATATTTTATAATTTTAATTCCTATTATT
TTATTGACAGAG Coding sequence (CDS) from alignment at scaffold_112:39980..47491- >TCONS_00046491 ID=TCONS_00046491|Name=TCONS_00046491|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_112:39980..47491- (Clytia hemisphaerica)
GTTTCAACGAGAAGATGTTTGCAGACAAATGGGGTGGTGAGGATTGGGAA
CTAGTTGATCGTATCATAGCAACAGGGATACAAATCATCCATTATCGATT
GCCACGTTTTTATCATTTGTACCATTCACGTAAAAAAATGTGGAACCATT
GACTGACCATCGCTGGTAAAACAGCCTTTTCTCCGACTCTAATGCACTTT
CAAGATCCTTGCCTCCACGAACGCTACACTGAGCTAGCTCTGAAGAAAGT
CATCTGGCAATATGATGGGCCTGGTATCATGGCTATGTATAAATCTGATT
GGTCAAGGGTAGGAGCTGGAATCCACAAAAGATGTTCCTTCAAAGTATAT
CCTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGAT
TGAAGGCGGTCCCGAAAGATGGAATCGCCATGATTCTAGATCTTCAAATG
CAAATTCCTTTGGATTTCTTCGACAGAACAAGAAAGGTTTCAACGAGAAG
ATGTTTGCAGACAAATGGGGTGGTGAGGATTGGGAACTAGTTGATCGTAT
CATAGCAACAGGGATACAAATCATCCATTATCGATTGCCACGTTTTTATC
ATTTGTACCATTCACGTAAAAAAATGTGGAACCATTGACTGACCATCGCT
GGTAAAACAGCCTTTTCTCCGACTCTAATGCACTTTCAAGATCCTTGCCT
CCACGAACGCTACACTGAGCTAGCTCTGAAGAAAGTCATCTGGCAATATG
ATGGGCCTGGTATCATGGCTATGTATAAATCTGATTGGTCAAGGGTAGGA
GCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAACCAAAAACA
AGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGGCGGTCCCG
AAAGATGGAATCGCCATGATTCTAGATCTTCAAATGCAAATTCCTTTGGA
TTTCTTCGACAGAACAAGAAAGGTTTCAACGAGAAGATGTTTGCAGACAA
ATGGGGTGGTGAGGATTGGGAACTAGTTGATCGTATCATAGCAACAGGGA
TACAAATCATCCATTATCGATTGCCACGTTTTTATCATTTGTACCATTCA
CGTAAAAAAATGTGGAACCATTGACTGACCATCGCTGGTAAAACAGCCTT
TTCTCCGACTCTAATGCACTTTCAAGATCCTTGCCTCCACGAACGCTACA
CTGAGCTAGCTCTGAAGAAAGTCATCTGGCAATATGATGGGCCTGGTATC
ATGGCTATGTATAAATCTGATTGGTCAAGGGTAGGAGCTGGAATCCACAA
AAGATGTTCCTTCAAAGTATATCCTAACCAAAAACAAGAAATTCAGCAAA
GTGAAGATCTTGAACGAAGGATTGAAGGCGGTCCCGAAAGATGGAATCGC
CATGATTCTAGATCTTCAAATGCAAATTCCTTTGGATTTCTTCGACAGAA
CAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046491-exon-scaffold_112-1575043694:47321..47491 | TCONS_00046491-exon-scaffold_112-1575043694:47321..47491 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1575043694:46963..47125 | TCONS_00046491-exon-scaffold_112-1575043694:46963..47125 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1575043694:46320..46474 | TCONS_00046491-exon-scaffold_112-1575043694:46320..46474 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1575043694:39980..40673 | TCONS_00046491-exon-scaffold_112-1575043694:39980..40673 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1510915933:47321..47491 | TCONS_00046491-exon-scaffold_112-1510915933:47321..47491 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1510915933:46963..47125 | TCONS_00046491-exon-scaffold_112-1510915933:46963..47125 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1510915933:46320..46474 | TCONS_00046491-exon-scaffold_112-1510915933:46320..46474 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1510915933:39980..40673 | TCONS_00046491-exon-scaffold_112-1510915933:39980..40673 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1491911889:47321..47491 | TCONS_00046491-exon-scaffold_112-1491911889:47321..47491 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1491911889:46963..47125 | TCONS_00046491-exon-scaffold_112-1491911889:46963..47125 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1491911889:46320..46474 | TCONS_00046491-exon-scaffold_112-1491911889:46320..46474 | Clytia hemisphaerica | exon |
| TCONS_00046491-exon-scaffold_112-1491911889:39980..40673 | TCONS_00046491-exon-scaffold_112-1491911889:39980..40673 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_112 | supercontig | scaffold_112:39980..47491 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008428 | Chond_GalNAc |
| IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008376 | acetylgalactosaminyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032580 | Golgi cisterna membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0032580 |
Golgi cisterna membrane |
| molecular_function |
GO:0008376 |
acetylgalactosaminyltransferase activity |
Blast
BLAST of TCONS_00046491 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.683e-26 Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 1
Query: 19 VPSKYILTKNKKFSKVKILNEGLKAVP-KDGIAMILDLQMQIPLDFFDRTRKLTIAGKTAFSPTLMHFQDPCLHERYTELALKKVIWQYDGPGIMAMYKSDWSRVGGFNEKMFADKWGGEDWELVDRIIATGIQIIHYRLPRFYHLYHSRKKMWN 480
+P L + F + L G+ AV I + DL + P + D RK + G+ AF+P +M C + W+ +G G+ +YKSD+ RVGG N + F D+WGGEDWEL+DR++ G+++ RL FYH YHS++ MW+
Sbjct: 879 LPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLS--C----GSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027
The following BLAST results are available for this feature:
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