TCONS_00046474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046474
Unique NameTCONS_00046474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046474 ID=TCONS_00046474|Name=TCONS_00046474|organism=Clytia hemisphaerica|type=transcript|length=486bp
TGTTGGTAGTTGCAAACCCTACTCCTAGTTTCCGTGACCTACTCATGTTC
AGTATAGTAGGCGGGCAATCCTCTTGATCCGTAGCATCTTTCATGGGACT
CAACcgcatgtgattggttcgaaagtagaAAGGATTTTGCtcacaaaagt
ttcaaaatctttttgtaCCCGCGAAAGATGTTACGGATCATAAGGATTGA
CCCTTATTAGTACTGAGGTAAATTTGCACTTTTTTCCCTGGCGAATGAAT
CTCGCATAAGATTTATCTTATTATCTCCTTAATATCTCTTACAGCTACCA
TTTTCGACCATAGCCTCCGGGATAATTTCGTGGTCCAATATGAGATATTG
AAGGATTATTGAGGACTTGTTTTGCTTGATTATTTTCCTTTGGGGACAAG
AATCTTTCTGTGGGTCAATATTTTGGCTAATTCTTCCGGGcccaccaggt
ctgtgagaagggggtgttatagccatttactctcgg
Run BLAST on NCBI

transcript from alignment at scaffold_110:202792..203277

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046474 ID=TCONS_00046474|Name=TCONS_00046474|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at scaffold_110:202792..203277 (Clytia hemisphaerica)
ccgagagtaaatggctataacacccccttctcacagacctggtgggCCCG
GAAGAATTAGCCAAAATATTGACCCACAGAAAGATTCTTGTCCCCAAAGG
AAAATAATCAAGCAAAACAAGTCCTCAATAATCCTTCAATATCTCATATT
GGACCACGAAATTATCCCGGAGGCTATGGTCGAAAATGGTAGCTGTAAGA
GATATTAAGGAGATAATAAGATAAATCTTATGCGAGATTCATTCGCCAGG
GAAAAAAGTGCAAATTTACCTCAGTACTAATAAGGGTCAATCCTTATGAT
CCGTAACATCTTTCGCGGGtacaaaaagattttgaaacttttgtgaGCAA
AATCCTTtctactttcgaaccaatcacatgcgGTTGAGTCCCATGAAAGA
TGCTACGGATCAAGAGGATTGCCCGCCTACTATACTGAACATGAGTAGGT
CACGGAAACTAGGAGTAGGGTTTGCAACTACCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029659XLOC_029659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046474-exon-scaffold_110-1491911889:202792..203277TCONS_00046474-exon-scaffold_110-1491911889:202792..203277Clytia hemisphaericaexon
TCONS_00046474-exon-scaffold_110-1510915933:202792..203277TCONS_00046474-exon-scaffold_110-1510915933:202792..203277Clytia hemisphaericaexon
TCONS_00046474-exon-scaffold_110-1575043694:202792..203277TCONS_00046474-exon-scaffold_110-1575043694:202792..203277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:202792..203277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.124897	0.435051	0.567506	0.172721	0.409459	0	0	0	0	0.129761	0.255899	0.170362	0	0	0	0	0.0985486	0	0	0	0.181205	0.146852	0	1.78766	1.59544	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top