TCONS_00046470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046470
Unique NameTCONS_00046470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046470 ID=TCONS_00046470|Name=TCONS_00046470|organism=Clytia hemisphaerica|type=transcript|length=499bp
TAATCTTTTGTCGACAACCATTGATTTGACTTCCAAGAAAGACTTGAACA
CAGTTCACTTTCTCCATCTCATTTTTCAATCCAGAAACAACTTTCTCTAA
GCGATCAGCTCTCTGTTCTTGCTCCATTCGCCGTTCGTGAGCGCGttctg
ttttcaaatcttgaagTTCAAACTTCTCTTTCCATTCTTCAGTTTCTTTC
AACTGTTTATCAAGTTTTCcttcaatttcttcaattttattgTCTTTGCT
CACAACAAGTTTTTCCAATTCTGCGATTTGACGTTGCAGAGATTGTACTG
TAAAGTTGCGGCGGgcatctttatttttcaattcttcgaTTTGTTCAGCT
TGGTGAACAGAGACGAGACGATACTCGTCCGATTGAATTCGATAATCACC
GAATTCTCTCATTTTTATCACAATATTTTACACAATATTCACAGCAAAAT
AACCTTGCTTCAAAAACACGACTTCTCTTTGCAGAGGGCGATGTTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00046470-protein

>TCONS_00046470-protein ID=TCONS_00046470-protein|Name=TCONS_00046470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MREFGDYRIQSDEYRLVSVHQAEQIEELKNKDARRNFTVQSLQRQIAELE
KLVVSKDNKIEEIEGKLDKQLKETEEWKEKFELQDLKTERAHERRMEQEQ
RADRLEKVVSGLKNEMEKVNCVQVFLGSQINGCRQKI
Run BLAST on NCBI

transcript from alignment at scaffold_110:119169..119667

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046470 ID=TCONS_00046470|Name=TCONS_00046470|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at scaffold_110:119169..119667 (Clytia hemisphaerica)
GTTAAACATCGCCCTCTGCAAAGAGAAGTCGTGTTTTTGAAGCAAGGTTA
TTTTGCTGTGAATATTGTGTAAAATATTGTGATAAAAATGAGAGAATTCG
GTGATTATCGAATTCAATCGGACGAGTATCGTCTCGTCTCTGTTCACCAA
GCTGAACAAAtcgaagaattgaaaaataaagatgcCCGCCGCAACTTTAC
AGTACAATCTCTGCAACGTCAAATCGCAGAATTGGAAAAACTTGTTGTGA
GCAAAGAcaataaaattgaagaaattgaagGAAAACTTGATAAACAGTTG
AAAGAAACTGAAGAATGGAAAGAGAAGTTTGAActtcaagatttgaaaac
agaaCGCGCTCACGAACGGCGAATGGAGCAAGAACAGAGAGCTGATCGCT
TAGAGAAAGTTGTTTCTGGATTGAAAAATGAGATGGAGAAAGTGAACTGT
GTTCAAGTCTTTCTTGGAAGTCAAATCAATGGTTGTCGACAAAAGATTA

Coding sequence (CDS) from alignment at scaffold_110:119169..119667

>TCONS_00046470 ID=TCONS_00046470|Name=TCONS_00046470|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_110:119169..119667 (Clytia hemisphaerica)
ATGAGAGAATTCGGTGATTATCGAATTCAATCGGACGAGTATCGTCTCGT
CTCTGTTCACCAAGCTGAACAAAtcgaagaattgaaaaataaagatgcCC
GCCGCAACTTTACAGTACAATCTCTGCAACGTCAAATCGCAGAATTGGAA
AAACTTGTTGTGAGCAAAGAcaataaaattgaagaaattgaagGAAAACT
TGATAAACAGTTGAAAGAAACTGAAGAATGGAAAGAGAAGTTTGAActtc
aagatttgaaaacagaaCGCGCTCACGAACGGCGAATGGAGCAAGAACAG
AGAGCTGATCGCTTAGAGAAAGTTGTTTCTGGATTGAAAAATGAGATGGA
GAAAGTGAACTGTGTTCAAGTCTTTCTTGGAAGTCAAATCAATGGTTGTC
GACAAAAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029655XLOC_029655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046470-proteinTCONS_00046470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046470-exon-scaffold_110-1491911889:119169..119667TCONS_00046470-exon-scaffold_110-1491911889:119169..119667Clytia hemisphaericaexon
TCONS_00046470-exon-scaffold_110-1510915933:119169..119667TCONS_00046470-exon-scaffold_110-1510915933:119169..119667Clytia hemisphaericaexon
TCONS_00046470-exon-scaffold_110-1575043694:119169..119667TCONS_00046470-exon-scaffold_110-1575043694:119169..119667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:119169..119667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122337	0.238596	1.10813	0.677583	2.80463	0.391104	1.57284	1.61972	0.309273	0.638475	0.371831	0	0.569538	0.506975	0.555736	0.521841	0.91838	0.847179	0.130047	0.136085	0.118282	0.173082	0	0	0.262696	0.937799	0.335497	0	0.271569	0.415029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top