TCONS_00046448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046448
Unique NameTCONS_00046448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046448 ID=TCONS_00046448|Name=TCONS_00046448|organism=Clytia hemisphaerica|type=transcript|length=825bp
atttgtttctttcAGTGAGACatgtaaaaacaagaaaatttacaaaaaca
acgaatgataaaaaggaaaagaaaaatgaacaacACAATCAAAAGATGTC
CACTTTGCTTAAGACTAGTTACCAAGACAATGCGCTCGTTGAACACATCA
ACAACTGTATTACAAAAGGCTGCACTAAAGGAACACCCAGAAGCTCATCA
ACACTATGATTACGTCAGCAAGCCAAATCCAGACTCCAACATTCGACAGG
TGGTATATTCAAAAGCTGCAAATCGTGACGAAGAAATATTGAATACAAAA
CGTACCATGACTAATCATTGGAATGACGAATTCTGGAAAGTGCAtaatca
aaatttctttcagGCAAAGAAAGAATTTATCGAGACAGCAAATGCAGCCT
CTGGAACAGGACAAGAAGTGGCAGACAAATTGTCGATTTTCTATAAAGAA
TTTCTTGAAAAGAATCACGATGTTTACATGGAATATAACAGAGAATGGTA
TCGTCGCAACTTCAGTCTCCTCTGGTTAAACGTTTGTTCATCCTTACGTA
AACCCTTTTCACGGCAGccgaaaagtgatgacgtcacaaacaaaaaagat
attttgtaaaaataatacTTTCAGAAAACGTGTGAATTGTGAAATATATT
TTCTATTAATTAAATTTTGTGTATATCAATTATCTTTCTTTATCTTTTAC
CTGCATAACTGTTCAAAACCGAGCTTAGGCTACGTGTCGTGTTTAAtatt
cccgtccgagagttatGACCGCCTTTGTGTTTTGAAGTTTAGAAACTTGA
TTACATAGCTTGTTTAGTAAATTAT
Run BLAST on NCBI

protein sequence of TCONS_00046448-protein

>TCONS_00046448-protein ID=TCONS_00046448-protein|Name=TCONS_00046448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MIKRKRKMNNTIKRCPLCLRLVTKTMRSLNTSTTVLQKAALKEHPEAHQH
YDYVSKPNPDSNIRQVVYSKAANRDEEILNTKRTMTNHWNDEFWKVHNQN
FFQAKKEFIETANAASGTGQEVADKLSIFYKEFLEKNHDVYMEYNREWYR
RNFSLLWLNVCSSLRKPFSRQPKSDDVTNKKDIL
Run BLAST on NCBI

transcript from alignment at scaffold_110:59704..63618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046448 ID=TCONS_00046448|Name=TCONS_00046448|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at scaffold_110:59704..63618- (Clytia hemisphaerica)
ATTTGTTTCTTTCAGTGAGACATGTAAAAACAAGAAAATTTACAAAAACA
ACGAATGATAAAAAGGAAAAGAAAAATGAACAACACAATCAAAAGATGTC
CACTTTGCTTAAGACTAGTTACCAAGACAATGCGCTCGTTGAACACATCA
ACAACTGTATTACAAAAGGTACAATCATTTTCTTAGGTCTTACTTTCTAT
AATGTTTAGGCTCTTCCAGAGGGTTTCCTTGGATTTTGGAGCAAGATTTG
TTTCACGTTGTAAAGAGGATGCAAGTTTTGTCAAGGGGTAATATCCAAAC
TAGGTTTGCCCTGGAGGTGAGGTAAAAAATGAAAGCGTTTCGAGGTATAC
TAACTTTTTTAGCTTATGCCTTTTTGAAATTGTTCTATTGGTCTATTTCG
TAGATTTAAAGATTCTCATTTTCAGGCTGCACTAAAGGAACACCCAGAAG
CTCATCAACACTATGATTACGTCAGCAAGCCAAATCCAGACTCCAACATT
CGACAGGTGGTATATTCAAAAGCTGCAAATCGTGACGAAGAAATATTGAA
TACAAAACGTACCATGACTAATCATTGGAATGACGAATTCTGGAAAGTGC
ATAATCAAAATTTCTTTCAGGTATTCATTACAGGGTCCTTACAGAACTAA
CTTTTTATTTACAGTGTCTGAGTGGCGCAGCTTTTTCTATAAAATCATCT
GTTAGAATAACTACAATTAGTCCGGAGGCTGGGGGATTCCACTTTGTCTG
TCAGAGAGCACGAGTGTAAACTACAAAATTATTGCACAATGTCTGAATTT
TGTGAATTTATTTGTTGACTATCCGAAATTTTCTCGTACAATCATGGTCG
AAATATATTGAGAATTAAGCTTATTTCCTCGTTTTTCGTAATTTGGAGTT
CGGGCGAGAAAGTCGATTTTGGGCCATCTCTTAAATTTAATCGAATATTT
CAATTTGGCTCGGTTTTATAGACTTCCAGGCTATATTATGAGCCTTATTG
AACCATTATTGAACTTTTGGATCTTTTTTAGTCTTAAGTCTCATGTTAAA
ACTCAGAGTTAAAACTCTACCCTTCCAACCTACTTTAGAGCACTTATAAA
GCACAAATCGATTGTGGTTTCAAAACTTCCCGGTGAATTTCCCTTTTTCT
CAAATATTACGACCATGATTGTAGCAATGTATTGCACAGACTATAATACA
AATATAGCGGAAAATTTCGACGTCAATTGTCCCTATTTAACCCCAGACTA
TATAATAAAACCTTTGTTCAACCAATGATAACCGTATGAATTCCGTCCCG
AGAAGATGGCTTTATTCCTCTCAGATTTGAAGTTTTGAAGCACTAAATGA
AGCCTATCGCTGTTATTGTAACTGCGCAATTTATGCTGATTTTAAGTCAC
TTTAGCGTGTCCCAATTAAGGATTCGTGAGACCATGAGAATNCGAAAGTA
AATGGTAGACAAAGTAATGAGCCAAGGCAAAACGAGATTAGCGTACCACT
ATGAAAGAAACCGCCTCCGGCGGTCGATAAAGATGAAGTACTTTAGGTGT
ACAAACTTTCGCGAGCAGAAACTTTCGCGGGGACGAAAAATCGCGAAATT
CACGACCTTTACTTTCGCGAATTTAACGGAAAAGTATTTTTTCGCGAGCA
TAAACTTTCGCAAATTAAGACAAAAAAAATGAGAATTTTCACATGAAAAA
ATGGCTTAGAAGGACAAATACTTCTTGGATTGGCTTAAAACATTTATCCT
TTGAGTAATTATAATTAGTCTTTTAGCAGGCTAAAAAGTGCCATAAAANG
TAACATGAGTATTTCTATTTCCTTTCATAGGCAAAGAAAGAATTTATCGA
GACAGCAAATGCAGCCTCTGGAACAGGTATGAATCGAGATAACCTTTGCT
TAGTCTTAATCCGACGCGCGTACGGTGCAAAATTCGAATTTCTATGGTAC
AGTACATAGTAGATATTTTTATTTGCAGTGTGAAAAATGACTTTAAGAAA
AGTGCACTCTTTTCAAATTGTGCATCCCTTTTTTCTTAGGCTTCTTTTCT
TCACAAAACTAGCAAGAGTATTCTTACTTCTTCTCATATATCTGTTTTTC
TATCCTACCATGTGAAAGTCAAAGTTTGTTTCAATCTTTTTCAAACGTTC
AAATAAAGAATTTAACTGCCGACTTTTCGTCGATCTTCTGACTTCTCTCA
CATCGAAACATCAGACCTAAAGGCAGAGATAAATGTTATGTTAAAATCAA
ACCATTTTCTTATTTTCGTTCAACATAGGACAAGAAGTGGCAGACAAATT
GTCGATTTTCTATAAAGAATTTCTTGAAAAGAATCACGATGTTTACATGG
AATATAACAGGTATAAAGATGAAGTACTTTAGGTGTACAAACTTTCGCGG
GGACGAAAAATCGCGAAATTCACGACCTTTACTTTCGCGAATTTAACGGA
AAAATATTTTTCGCGAGCATAAACTTTCGCAAATTAAGACAAAAAAATGA
GAATTTTCACATGAAAAAATGGCTTAGAAGGACAAATACTTCTTGGATTG
GCTTGAAACATTTATCCTTTGCATAATTATAATTAGTCTTTTAGCAGGCT
AAAAAGTGCCATAAAAGTTACATTTTATTTAAAGTTTGAAGTTTTACAGA
TTTTCTATTTTGCCAAGAATTTTTCGCGAGCATAAACTTTCGCGAATGGC
ACTTCCTAGAATTTTTAAAGACATTTACTTTCGCGAAAATCGCGAAAGTT
TGTACGCCTAAAGCAACATTCCTATCGAGATAATCGCGTATGTAAACGCT
TACTTTTTTGATGAAGTCGATAACTTACGTGAAGATTTTTTAAAGTGATT
GTTCTGTTTGCAAACGAGGTTAACAAATCTCGAAAAGATGAAACCACATA
CCTATTCTTAATTATAGTGTACATGTTGTTTTTTTATAAGCAAGTGTATA
GNGGGCTCAGACTTTATTCTGGATACATGTTGTTTTTTTTATAAGCAAGT
GTATAGCCCTTGGTCAGGCTCGTGTATGCTTAAGTTCTCAAAGCATCCAG
GCATAGTTTATGCTTATTATATGCTTAAGAATCATGCTATGATTCACCCC
GAGCCAAGTTTTAAATGAAATTTCAGAAATTTTGTAAACTTTTGTTCAGA
TTTTGGGAGCAGTGGAATGTTAGCTAGCTGTGGAATGTCTTATTTTTTAC
TTGACCTCTATCAAACCTTTTTAAACAGATAAAAATGACCACTTGAAAAA
TATTTTAGGCTGACATATATGCTCATGTTATGCTTAGGAATTCTGCAAAT
CTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAACAACATGC
AGTGTCAAAAGAAAGGTCTGAATCAGAATAGCACAAAATCGACTTGACTT
TATCTTTTGATACTTGAACAACTTAAGATGTGAGAAATTTGTTTATTAGA
AATAAGTATTCGCCTTTTAGAGAAAATTTTTGGGATGGTCTTTTAGATTT
TGACTACCTCCGCCATTTTGAAATGTCCACTGTTAAAGGAGGTTACTGAC
TTTAAAATAACCTTCTACTTTGTATTTCTAGAGAATGGTATCGTCGCAAC
TTCAGTCTCCTCTGGTTAAACGTTTGTTCATCCTTACGTAAACCCTTTTC
ACGGCAGCCGAAAAGTGATGACGTCACAAACAAAAAAGATATTTTGTAAA
AATAATACTTTCAGAAAACGTGTGAATTGTGAAATATATTTTCTATTAAT
TAAATTTTGTGTATATCAATTATCTTTCTTTATCTTTTACCTGCATAACT
GTTCAAAACCGAGCTTAGGCTACGTGTCGTGTTTAATATTCCCGTCCGAG
AGTTATGACCGCCTTTGTGTTTTGAAGTTTAGAAACTTGATTACATAGCT
TGTTTAGTAAATTAT

Coding sequence (CDS) from alignment at scaffold_110:59704..63618-

>TCONS_00046448 ID=TCONS_00046448|Name=TCONS_00046448|organism=Clytia hemisphaerica|type=CDS|length=2775bp|location=Sequence derived from alignment at scaffold_110:59704..63618- (Clytia hemisphaerica)
AGAATGGTATCGTCGCAACTTCAGTCTCCTCTGGTTAAACGTTTGTTCAT
CCTTACGTAAACCCTTTTCACGGCAGCCGAAAAGTGATGACGTCACAAAC
AAAAAAGATATTTTGTAAGACAAGAAGTGGCAGACAAATTGTCGATTTTC
TATAAAGAATTTCTTGAAAAGAATCACGATGTTTACATGGAATATAACAG
GCAAAGAAAGAATTTATCGAGACAGCAAATGCAGCCTCTGGAACAGGCTG
CACTAAAGGAACACCCAGAAGCTCATCAACACTATGATTACGTCAGCAAG
CCAAATCCAGACTCCAACATTCGACAGGTGGTATATTCAAAAGCTGCAAA
TCGTGACGAAGAAATATTGAATACAAAACGTACCATGACTAATCATTGGA
ATGACGAATTCTGGAAAGTGCATAATCAAAATTTCTTTCAGATGATAAAA
AGGAAAAGAAAAATGAACAACACAATCAAAAGATGTCCACTTTGCTTAAG
ACTAGTTACCAAGACAATGCGCTCGTTGAACACATCAACAACTGTATTAC
AAAAGAGAATGGTATCGTCGCAACTTCAGTCTCCTCTGGTTAAACGTTTG
TTCATCCTTACGTAAACCCTTTTCACGGCAGCCGAAAAGTGATGACGTCA
CAAACAAAAAAGATATTTTGTAAGACAAGAAGTGGCAGACAAATTGTCGA
TTTTCTATAAAGAATTTCTTGAAAAGAATCACGATGTTTACATGGAATAT
AACAGGCAAAGAAAGAATTTATCGAGACAGCAAATGCAGCCTCTGGAACA
GGCTGCACTAAAGGAACACCCAGAAGCTCATCAACACTATGATTACGTCA
GCAAGCCAAATCCAGACTCCAACATTCGACAGGTGGTATATTCAAAAGCT
GCAAATCGTGACGAAGAAATATTGAATACAAAACGTACCATGACTAATCA
TTGGAATGACGAATTCTGGAAAGTGCATAATCAAAATTTCTTTCAGATGA
TAAAAAGGAAAAGAAAAATGAACAACACAATCAAAAGATGTCCACTTTGC
TTAAGACTAGTTACCAAGACAATGCGCTCGTTGAACACATCAACAACTGT
ATTACAAAAGAGAATGGTATCGTCGCAACTTCAGTCTCCTCTGGTTAAAC
GTTTGTTCATCCTTACGTAAACCCTTTTCACGGCAGCCGAAAAGTGATGA
CGTCACAAACAAAAAAGATATTTTGTAAGACAAGAAGTGGCAGACAAATT
GTCGATTTTCTATAAAGAATTTCTTGAAAAGAATCACGATGTTTACATGG
AATATAACAGGCAAAGAAAGAATTTATCGAGACAGCAAATGCAGCCTCTG
GAACAGGCTGCACTAAAGGAACACCCAGAAGCTCATCAACACTATGATTA
CGTCAGCAAGCCAAATCCAGACTCCAACATTCGACAGGTGGTATATTCAA
AAGCTGCAAATCGTGACGAAGAAATATTGAATACAAAACGTACCATGACT
AATCATTGGAATGACGAATTCTGGAAAGTGCATAATCAAAATTTCTTTCA
GATGATAAAAAGGAAAAGAAAAATGAACAACACAATCAAAAGATGTCCAC
TTTGCTTAAGACTAGTTACCAAGACAATGCGCTCGTTGAACACATCAACA
ACTGTATTACAAAAGAGAATGGTATCGTCGCAACTTCAGTCTCCTCTGGT
TAAACGTTTGTTCATCCTTACGTAAACCCTTTTCACGGCAGCCGAAAAGT
GATGACGTCACAAACAAAAAAGATATTTTGTAAGACAAGAAGTGGCAGAC
AAATTGTCGATTTTCTATAAAGAATTTCTTGAAAAGAATCACGATGTTTA
CATGGAATATAACAGGCAAAGAAAGAATTTATCGAGACAGCAAATGCAGC
CTCTGGAACAGGCTGCACTAAAGGAACACCCAGAAGCTCATCAACACTAT
GATTACGTCAGCAAGCCAAATCCAGACTCCAACATTCGACAGGTGGTATA
TTCAAAAGCTGCAAATCGTGACGAAGAAATATTGAATACAAAACGTACCA
TGACTAATCATTGGAATGACGAATTCTGGAAAGTGCATAATCAAAATTTC
TTTCAGATGATAAAAAGGAAAAGAAAAATGAACAACACAATCAAAAGATG
TCCACTTTGCTTAAGACTAGTTACCAAGACAATGCGCTCGTTGAACACAT
CAACAACTGTATTACAAAAGAGAATGGTATCGTCGCAACTTCAGTCTCCT
CTGGTTAAACGTTTGTTCATCCTTACGTAAACCCTTTTCACGGCAGCCGA
AAAGTGATGACGTCACAAACAAAAAAGATATTTTGTAAGACAAGAAGTGG
CAGACAAATTGTCGATTTTCTATAAAGAATTTCTTGAAAAGAATCACGAT
GTTTACATGGAATATAACAGGCAAAGAAAGAATTTATCGAGACAGCAAAT
GCAGCCTCTGGAACAGGCTGCACTAAAGGAACACCCAGAAGCTCATCAAC
ACTATGATTACGTCAGCAAGCCAAATCCAGACTCCAACATTCGACAGGTG
GTATATTCAAAAGCTGCAAATCGTGACGAAGAAATATTGAATACAAAACG
TACCATGACTAATCATTGGAATGACGAATTCTGGAAAGTGCATAATCAAA
ATTTCTTTCAGATGATAAAAAGGAAAAGAAAAATGAACAACACAATCAAA
AGATGTCCACTTTGCTTAAGACTAGTTACCAAGACAATGCGCTCGTTGAA
CACATCAACAACTGTATTACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029644XLOC_029644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046448-exon-scaffold_110-1575043694:63451..63618TCONS_00046448-exon-scaffold_110-1575043694:63451..63618Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1575043694:62999..63193TCONS_00046448-exon-scaffold_110-1575043694:62999..63193Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1575043694:61743..61788TCONS_00046448-exon-scaffold_110-1575043694:61743..61788Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1575043694:61259..61340TCONS_00046448-exon-scaffold_110-1575043694:61259..61340Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1575043694:59704..60037TCONS_00046448-exon-scaffold_110-1575043694:59704..60037Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1510915933:63451..63618TCONS_00046448-exon-scaffold_110-1510915933:63451..63618Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1510915933:62999..63193TCONS_00046448-exon-scaffold_110-1510915933:62999..63193Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1510915933:61743..61788TCONS_00046448-exon-scaffold_110-1510915933:61743..61788Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1510915933:61259..61340TCONS_00046448-exon-scaffold_110-1510915933:61259..61340Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1510915933:59704..60037TCONS_00046448-exon-scaffold_110-1510915933:59704..60037Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1491911889:63451..63618TCONS_00046448-exon-scaffold_110-1491911889:63451..63618Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1491911889:62999..63193TCONS_00046448-exon-scaffold_110-1491911889:62999..63193Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1491911889:61743..61788TCONS_00046448-exon-scaffold_110-1491911889:61743..61788Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1491911889:61259..61340TCONS_00046448-exon-scaffold_110-1491911889:61259..61340Clytia hemisphaericaexon
TCONS_00046448-exon-scaffold_110-1491911889:59704..60037TCONS_00046448-exon-scaffold_110-1491911889:59704..60037Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046448-proteinTCONS_00046448-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:59704..63618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
118.701	103.228	89.0777	93.7836	50.7951	36.5793	32.284	33.5513	38.5353	36.8512	45.6298	49.6725	56.3066	69.6528	53.405	58.8911	42.4572	65.2315	51.795	43.3726	69.4947	67.4683	87.2994	88.9136	63.6909	62.3613	52.4377	67.6781	61.7511	72.7491
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018796UPF0671
Blast
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BLAST of TCONS_00046448 vs. Swiss-Prot (Human)
Match: APOP1 (Apoptogenic protein 1, mitochondrial OS=Homo sapiens GN=APOPT1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.852e-16
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  187 PEAHQHYDYVSKPNPDSNIRQVVYSKAANRD--EEILNTKRTMTNHWNDEFWKVHNQNFFQAKKEFIETANAASG------TGQEV---ADKLSIFYKEFLEKNHDVYMEYNREWYRRNFSLLWL 528
            P     +D++  P+  SN+R V +    N    E+ L   R  T  WN +FW   N  F + K+EFI +     G      +GQ+    A++++ FYKEFL KN   +M YNR+WY+RNF++ + 
Sbjct:   60 PPRKSCHDWIGPPDKYSNLRPVHFYIPENESPLEQKLRKLRQETQEWNQQFWANQNLTFSKEKEEFIHSRLKTKGLGLRTESGQKATLNAEEMADFYKEFLSKNFQKHMYYNRDWYKRNFAITFF 184
The following BLAST results are available for this feature:
BLAST of TCONS_00046448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APOP13.852e-1634.40Apoptogenic protein 1, mitochondrial OS=Homo sapie... [more]
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