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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046430 ID=TCONS_00046430|Name=TCONS_00046430|organism=Clytia hemisphaerica|type=transcript|length=1258bp
aaagaagcaaggcggaagtaagttttaaaacaaaaacaaaaagaaattta
tctcaggacaatttttttgagtcgacaataaattagttatcacatagtct
agcatgctagacgacttaactcagtaaaaaataggaagtagaaaacttga
caggagcatcaatatagtcgtctagaatattttgtgcacaacaaNAAAAG
AAAGGTGATAAACTATGTAGTTTTTCAGAGAATTTGctatcaaataaaat
ttttttctaactttGGAAAGACTTGAAAAAGAGCAAAAGTAAAATGTTGA
AGCGCTTGGAGTGAGAGATGTTGAGATTGTGATTATGGAAGTTGAAGAAG
CAGTCGAAACTCCAAAGAAATATATCAGATCGTTATCTCCGAGTGCTCAT
AGCATATGTATTCTATGTCAAAAAGATATAGTTTCAAAACGTCGTCATTG
CTTGTTCGAGAATGATCGAAAGACTAAACCATGTAAAGATCTTGAACAGT
GTTTAAGTATCACAATCAAACAAACAACAGACTTTCGAATTATTTGTGAA
AATTGTAATAGATCTATCGATACTGACATTAAAAAACGAGGGGTAAAGAG
AGGTAAATTCCAGAGAGGTAGGCAAGTAGCCGAGCAGAAATATGTGAGGA
CAAAGTTAAAAAGGCTGTCAAAAGGAACCATACAACCACCAAAAAGTCGA
AAGAAATTGACAAATGAATTTGAACACTTGAAAATTGGAGCAGAGAATTT
GCATATGAAAGTgagtatttatttttcaaactttttcttgTACATCAATA
AAAGGAACTTTAAACCGGTTTTAAAtcagtacatgttttttataagcatg
gtGTAAACTTTTGTGAGCCTCATTTACCTAATGCTtagcaaaattaattt
tttgagtctTGGTTGAATATGCATATGCTATACTTATTTGATAGTTCAAT
TTGAACATTATGggtgtttttttgtaatttgtggGATAtatgctttgaaa
tttttttaaattgaggCCAAGCATATGCTTAGGCAAAGTCTTAGTTTTTG
CAAGAATTGAGCCTGAATATGCTTATAATAAGTAATTcttgaaatctgag
gctcagattgtaaATAATTTGTTCCTAGGTTTTGGCAAAATTGCCTCGTT
TTATTTTGGGATTTTAGAATCTTAgagtttaaatattttttattgatgtt
ttgtattttaatttctttttcatgtgaTAATGATATATACACGCTCTTTT
ACTAGAAC Run BLAST on NCBI protein sequence of TCONS_00046430-protein >TCONS_00046430-protein ID=TCONS_00046430-protein|Name=TCONS_00046430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MEVEEAVETPKKYIRSLSPSAHSICILCQKDIVSKRRHCLFENDRKTKPC
KDLEQCLSITIKQTTDFRIICENCNRSIDTDIKKRGVKRGKFQRGRQVAE
QKYVRTKLKRLSKGTIQPPKSRKKLTNEFEHLKIGAENLHMKVSIYFSNF
FLYINKRNFKPVLNQYMFFISMV Run BLAST on NCBI transcript from alignment at scaffold_11:12940..14197 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046430 ID=TCONS_00046430|Name=TCONS_00046430|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at scaffold_11:12940..14197 (Clytia hemisphaerica)
GTTCTAGTAAAAGAGCGTGTATATATCATTAtcacatgaaaaagaaatta
aaatacaaaacatcaataaaaaatatttaaactcTAAGATTCTAAAATCC
CAAAATAAAACGAGGCAATTTTGCCAAAACCTAGGAACAAATTATttaca
atctgagcctcagatttcaagAATTACTTATTATAAGCATATTCAGGCTC
AATTCTTGCAAAAACTAAGACTTTGCCTAAGCATATGCTTGGcctcaatt
taaaaaaatttcaaagcataTATCccacaaattacaaaaaaacaccCATA
ATGTTCAAATTGAACTATCAAATAAGTATAGCATATGCATATTCAACCAa
gactcaaaaaattaattttgctaAGCATTAGGTAAATGAGGCTCACAAAA
GTTTACaccatgcttataaaaaacatgtactgaTTTAAAACCGGTTTAAA
GTTCCTTTTATTGATGTAcaagaaaaagtttgaaaaataaatactcACTT
TCATATGCAAATTCTCTGCTCCAATTTTCAAGTGTTCAAATTCATTTGTC
AATTTCTTTCGACTTTTTGGTGGTTGTATGGTTCCTTTTGACAGCCTTTT
TAACTTTGTCCTCACATATTTCTGCTCGGCTACTTGCCTACCTCTCTGGA
ATTTACCTCTCTTTACCCCTCGTTTTTTAATGTCAGTATCGATAGATCTA
TTACAATTTTCACAAATAATTCGAAAGTCTGTTGTTTGTTTGATTGTGAT
ACTTAAACACTGTTCAAGATCTTTACATGGTTTAGTCTTTCGATCATTCT
CGAACAAGCAATGACGACGTTTTGAAACTATATCTTTTTGACATAGAATA
CATATGCTATGAGCACTCGGAGATAACGATCTGATATATTTCTTTGGAGT
TTCGACTGCTTCTTCAACTTCCATAATCACAATCTCAACATCTCTCACTC
CAAGCGCTTCAACATTTTACTTTTGCTCTTTTTCAAGTCTTTCCaaagtt
agaaaaaaattttatttgatagCAAATTCTCTGAAAAACTACATAGTTTA
TCACCTTTCTTTTNttgttgtgcacaaaatattctagacgactatattga
tgctcctgtcaagttttctacttcctattttttactgagttaagtcgtct
agcatgctagactatgtgataactaatttattgtcgactcaaaaaaattg
tcctgagataaatttctttttgtttttgttttaaaacttacttccgcctt
gcttcttt Coding sequence (CDS) from alignment at scaffold_11:12940..14197 >TCONS_00046430 ID=TCONS_00046430|Name=TCONS_00046430|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_11:12940..14197 (Clytia hemisphaerica)
TTACaccatgcttataaaaaacatgtactgaTTTAAAACCGGTTTAAAGT
TCCTTTTATTGATGTAcaagaaaaagtttgaaaaataaatactcACTTTC
ATATGCAAATTCTCTGCTCCAATTTTCAAGTGTTCAAATTCATTTGTCAA
TTTCTTTCGACTTTTTGGTGGTTGTATGGTTCCTTTTGACAGCCTTTTTA
ACTTTGTCCTCACATATTTCTGCTCGGCTACTTGCCTACCTCTCTGGAAT
TTACCTCTCTTTACCCCTCGTTTTTTAATGTCAGTATCGATAGATCTATT
ACAATTTTCACAAATAATTCGAAAGTCTGTTGTTTGTTTGATTGTGATAC
TTAAACACTGTTCAAGATCTTTACATGGTTTAGTCTTTCGATCATTCTCG
AACAAGCAATGACGACGTTTTGAAACTATATCTTTTTGACATAGAATACA
TATGCTATGAGCACTCGGAGATAACGATCTGATATATTTCTTTGGAGTTT
CGACTGCTTCTTCAACTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046430-exon-scaffold_11-1491911889:12940..14197 | TCONS_00046430-exon-scaffold_11-1491911889:12940..14197 | Clytia hemisphaerica | exon |
| TCONS_00046430-exon-scaffold_11-1510915933:12940..14197 | TCONS_00046430-exon-scaffold_11-1510915933:12940..14197 | Clytia hemisphaerica | exon |
| TCONS_00046430-exon-scaffold_11-1575043694:12940..14197 | TCONS_00046430-exon-scaffold_11-1575043694:12940..14197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:12940..14197 . |
Blast
The following BLAST results are available for this feature:
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