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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=transcript|length=702bp
TTAGAGAAGACGCACTTTACAACTCCACATTGAATCAAGCTCAATTGACG
AATATTAAGGTTAAATCTAAAGACGATCAgcaataaaaattgaaaaatgc
taAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGT
GCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGG
GCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTA
CACAAGATATTGATGGAAGAGATGCACTCAAAGCTACAAAGACGCTATTG
ATTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAAT
TTCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTG
CAACAAGTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAA
TTTCTCGGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGT
TTGGTGCTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCA
AAAGAAGTTATGCACCTTTCAGCTGAATTTTCAAAGTAAATTAAGCTAGT
CTTGTAATAGGGTTTATTTGAAAAACCGTTAAACTATTCTTGGTTGTTGT
AGACCGAATTATTATTTTACTTTGTGAATTTGTATAGCTATGCAAAGAAA
AC Run BLAST on NCBI protein sequence of TCONS_00046390-protein >TCONS_00046390-protein ID=TCONS_00046390-protein|Name=TCONS_00046390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLNMRVINLGTIGVIILCALINISGLVGTSWMVNGQIHEGLWKHYDDGEN
STQDIDGRDALKATKTLLIMACFTLAISCAYWSLISLAKDMNAKILAAML
LATSLMQVIALSVYANSQFLGQRLEYHFGWSYIIVWCSTVLIFVPAGLCL
IKRSYAPFS Run BLAST on NCBI transcript from alignment at scaffold_109:126358..128048- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at scaffold_109:126358..128048- (Clytia hemisphaerica)
TTAGAGAAGACGCACTTTACAACTCCACATTGAATCAAGCTCAATTGACG
AATATTAAGGTTAAATCTAAAGACGATCAGCAATAAAAATTGAAAAATGC
TAAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGT
GCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGG
GCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTA
CACAAGATATTGATGGAAGAGGTGAGAAAAATAATGCCGGGCTATCTTCC
TTCCATCAATTTATCAAACTCGAACCCAGTCCCTTAGTTTATTTTCTTAT
GATTCTGATCGCGCTCACGAAAAAGATTGTATCGTGTCCATCACTATACG
ATACGAGAGTGGGTACGGTCTGGGCGACCATCAGTTACCGTTGATAAAAT
CTGGGATACAAAAGGGGTGGTGTTAAGTCTGCCCTACCCAGCTTAGAAAC
TGTTCATCTAACGTTTCCAGACCATCTAAAAAGAGCGACAAATAACTATA
ATCGACAAAAAGAACGACAAACCCTAACACCAACTATCAAAGAACGTCAC
ATTTTGGGGTAACGTTAAGGTATCGGTAAAATACTGATTTAGACGTACGT
TATGAAATACATAACATGAGAACATGAGAAAAGCATGTCAAAATAATTCA
AATGACAAACTCAGCCTTGCAACATATCCTCCTCTTTTTCTACAACTATT
TTCTAAACTACTCTTCAAAGATATTCACAATATATATGTTGTGGAGCAGT
GAATTTATTTTCCGATTATGGTGGCAGAAAGTTAGTCAATTCTTATTTCC
TTCAATTTTCTAGATGCACTCAAAGCTACAAAGACGCTATTGATTATGGC
TTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAATTTCACTCG
CAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTGCAACAAGT
AAGAGTCTTTTAGTTTCTTGCATACCGTACTTACCTAAAACTATCCGAAA
GTTCCCTAGACGTAAGCAATTAGATAAAATCGTATCAGCTGAAATGAAAA
TTTCCGAGTATTTCGAGATAGACGAACAGAGCATAGTCAACTAAAAAAGA
TTTTACAAGGGAACGCTTTTGATTGTTTTAGGTAAGCACGGTAGCTGTTT
GGTATAATAAATGATGGCATTCTTAGAGCTTTTTACTGGCTATTTCGTTT
TTTGTTTTTTTTTATCGAAAATATTAAAAAATATCATCATAATTAGACTG
TTGTGATAAATAAATTCTCGCAATTTGAGATTCAATTTTAGCAACCTTGG
GATGTACCAATGAATGATAAAAGTCAAATTATTATCTTTTCATAGGTTTG
ATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAATTTCTCGGACA
ACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGTTTGGTGCTCAA
CGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCAAAAGAAGTTAT
GCACCTTTCAGCTGAATTTTCAAAGTAAATTAAGCTAGTCTTGTAATAGG
GTTTATTTGAAAAACCGTTAAACTATTCTTGGTTGTTGTAGACCGAATTA
TTATTTTACTTTGTGAATTTGTATAGCTATGCAAAGAAAAC Coding sequence (CDS) from alignment at scaffold_109:126358..128048- >TCONS_00046390 ID=TCONS_00046390|Name=TCONS_00046390|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_109:126358..128048- (Clytia hemisphaerica)
GTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAGCCAATTTCTC
GGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTATTGTTTGGTG
CTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTAATCAAAAGAA
GTTATGCACCTTTCAGCTGAATGCACTCAAAGCTACAAAGACGCTATTGA
TTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTGGTCCTTAATT
TCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTATGCTACTTGC
AACAAATGCTAAATATGCGAGTGATCAATCTGGGGACAATTGGGGTAATT
ATTTTATGTGCTCTGATCAACATCTCTGGTTTGGTTGGTACTTCATGGAT
GGTGAATGGGCAGATTCATGAAGGTCTGTGGAAGCATTACGACGACGGGG
AAAATTCTACACAAGATATTGATGGAAGAGGTTTGATGCAAGTGATAGCG
TTGTCCGTTTACGCCAATAGCCAATTTCTCGGACAACGTCTGGAATATCA
CTTTGGATGGTCGTATATTATTGTTTGGTGCTCAACGGTTTTAATATTCG
TTCCCGCTGGATTGTGTTTAATCAAAAGAAGTTATGCACCTTTCAGCTGA
ATGCACTCAAAGCTACAAAGACGCTATTGATTATGGCTTGTTTTACACTA
GCGATTTCCTGTGCGTATTGGTCCTTAATTTCACTCGCAAAGGATATGAA
TGCAAAAATATTGGCTGCTATGCTACTTGCAACAAATGCTAAATATGCGA
GTGATCAATCTGGGGACAATTGGGGTAATTATTTTATGTGCTCTGATCAA
CATCTCTGGTTTGGTTGGTACTTCATGGATGGTGAATGGGCAGATTCATG
AAGGTCTGTGGAAGCATTACGACGACGGGGAAAATTCTACACAAGATATT
GATGGAAGAGGTTTGATGCAAGTGATAGCGTTGTCCGTTTACGCCAATAG
CCAATTTCTCGGACAACGTCTGGAATATCACTTTGGATGGTCGTATATTA
TTGTTTGGTGCTCAACGGTTTTAATATTCGTTCCCGCTGGATTGTGTTTA
ATCAAAAGAAGTTATGCACCTTTCAGCTGAATGCACTCAAAGCTACAAAG
ACGCTATTGATTATGGCTTGTTTTACACTAGCGATTTCCTGTGCGTATTG
GTCCTTAATTTCACTCGCAAAGGATATGAATGCAAAAATATTGGCTGCTA
TGCTACTTGCAACAAATGCTAAATATGCGAGTGATCAATCTGGGGACAAT
TGGGGTAATTATTTTATGTGCTCTGATCAACATCTCTGGTTTGGTTGGTA
CTTCATGGATGGTGAATGGGCAGATTCATGAAGGTCTGTGGAAGCATTAC
GACGACGGGGAAAATTCTACACAAGATATTGATGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046390-exon-scaffold_109-1575043694:127778..128048 | TCONS_00046390-exon-scaffold_109-1575043694:127778..128048 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1575043694:127051..127185 | TCONS_00046390-exon-scaffold_109-1575043694:127051..127185 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1575043694:126358..126653 | TCONS_00046390-exon-scaffold_109-1575043694:126358..126653 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1510915933:127778..128048 | TCONS_00046390-exon-scaffold_109-1510915933:127778..128048 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1510915933:127051..127185 | TCONS_00046390-exon-scaffold_109-1510915933:127051..127185 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1510915933:126358..126653 | TCONS_00046390-exon-scaffold_109-1510915933:126358..126653 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1491911889:127778..128048 | TCONS_00046390-exon-scaffold_109-1491911889:127778..128048 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1491911889:127051..127185 | TCONS_00046390-exon-scaffold_109-1491911889:127051..127185 | Clytia hemisphaerica | exon |
| TCONS_00046390-exon-scaffold_109-1491911889:126358..126653 | TCONS_00046390-exon-scaffold_109-1491911889:126358..126653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:126358..128048 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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