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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046385 ID=TCONS_00046385|Name=TCONS_00046385|organism=Clytia hemisphaerica|type=transcript|length=734bp
TAATGTTGACTAGAAACCTTTGGACAGACCAAGGACTTTGTAATGGGTCA
ATGGGAATAGTTAAAGATATTATTTATCAAGAAGGAGATTCTCCTCCAAA
TCTGCCTATAGCTGTTATTGTTCAATTTGACTCTTTTTATAAAGGGCCGA
GTGTATGCGAAGACCAACCTCGCTGTATTCCTATTATTCCTTTGACAAAT
TCTTCAGACCTTCGCGGTACATCTCATGAGCGGCAACAACTTCCTTTGAG
ATTGTCTTGGGCAATAACTATTCACAAGTCTCAAGGGTTAACTTTGAATA
AAGCATGGATTGATTTAGGAAATACAGAAAGATTTATTGGTTTAGCGTAT
GTTGGAATTTCAAGAGTGAGAAAGCTAAAAGATATGATTATTGAGCCAAT
GACATTAGAACGCTTACAAGATATAAAGAgaaggaaaaattttaaattta
gagaATTAGAAGAACAGAAAATTAACGGCTTGGCACTAGAAACTGAGACA
AGATTGATTTGATAAGGGTGTATATTGATGAGAACTAAACGTTTTTAAAG
ATTGGGGGGAGGGGTaaatgtattttcaaaattgtaaataatgatttttt
tttcaatttaaagctCGATATCAAAGGAATATGTCACAAACACAATTCAA
TGATGCTTCAAAATGACCTTTCCTAATGgTCATTTTCAAAGCTTATTCAT
CAAAACGAGAAATTATTTCAATCATCAACCTTNN Run BLAST on NCBI protein sequence of TCONS_00046385-protein >TCONS_00046385-protein ID=TCONS_00046385-protein|Name=TCONS_00046385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MLTRNLWTDQGLCNGSMGIVKDIIYQEGDSPPNLPIAVIVQFDSFYKGPS
VCEDQPRCIPIIPLTNSSDLRGTSHERQQLPLRLSWAITIHKSQGLTLNK
AWIDLGNTERFIGLAYVGISRVRKLKDMIIEPMTLERLQDIKRRKNFKFR
ELEEQKINGLALETETRLI Run BLAST on NCBI transcript from alignment at scaffold_109:317523..318641+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046385 ID=TCONS_00046385|Name=TCONS_00046385|organism=Clytia hemisphaerica|type=transcript|length=1119bp|location=Sequence derived from alignment at scaffold_109:317523..318641+ (Clytia hemisphaerica)
TAATGTTGACTAGAAACCTTTGGACAGACCAAGGACTTTGTAATGGGTCA
ATGGGAATAGTTAAAGATATTATTTATCAAGAAGGAGATTCTCCTCCAAA
TCTGCCTATAGCTGTTATTGTTCAATTTGACTCTTTTTATAAAGGGCCGA
GTGTATGCGAAGACCAACCTCGCTGTATTCCTATTATTCCTTTGACAAAT
TCTTCAGACCTTCGCGGTACATCTCATGAGCGGCAACAACTTCCTTTGAG
ATTGTCTTGGGCAATAACTATTCACAAGTCTCAAGGGTTAACTTTGAATA
AAGCATGGATTGATTTAGGAAATACAGAAAGATTTATTGGTTTAGCGTAT
GTTGGAATTTCAAGAGTGAGAAAGCTAAAAGATATGATTATTGAGCCAAT
GACATTAGAACGCTTACAAGATATAAAGAgaaggaaaaattttaaattta
gagaATTAGAAGAACAGAAAATTAACGGCTTGGCACTAGAAACTGAGACA
AGATTGATTTGATAAGGGTGTATATTGATGAGAACTAAACGTTTTTAAAG
ATTGGGGGGAGGGGTaaatgtattttcaaaattgtaaataatgatttttt
tttcaatttaaagctCGATATCAAAGGAATATGTCACAAACACAATTCAA
TGATGCTTCAAAATGACCTTTCCTAATGGTAAGAGTCGTAATTTTTTAGT
TGTCAtgattatttgattttttaatttagtATGTACCAGAAAAAAGCGCT
ATCAATTGAGACtctttttgggccaattttccatgacgtcatttttcagt
aCAAAACCAAtagaaaatgatttcaaaaagacttcaaaaataaatttaaa
ccgGTTCATTAGAAAGACCTGAAAGAGTAGATAACGAAAATTGGGCTATT
TGCCAATTTATAACTCCAAAGGGACCtctttgccaaatttcagccacatA
CTATTTTTTCAAGGTAAAACCCAATTCCCACATACTAATTTCCTTATCAA
CTTGTTCGTATACGACTTTCTGACTTAACAAATAAGTGGcttgattttct
tttccttttttaggTCATTTTCAAAGCTTATTCATCAAAACGAGAAATTA
TTTCAATCATCAACCTTNN Coding sequence (CDS) from alignment at scaffold_109:317523..318641+ >TCONS_00046385 ID=TCONS_00046385|Name=TCONS_00046385|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_109:317523..318641+ (Clytia hemisphaerica)
ATGTTGACTAGAAACCTTTGGACAGACCAAGGACTTTGTAATGGGTCAAT
GGGAATAGTTAAAGATATTATTTATCAAGAAGGAGATTCTCCTCCAAATC
TGCCTATAGCTGTTATTGTTCAATTTGACTCTTTTTATAAAGGGCCGAGT
GTATGCGAAGACCAACCTCGCTGTATTCCTATTATTCCTTTGACAAATTC
TTCAGACCTTCGCGGTACATCTCATGAGCGGCAACAACTTCCTTTGAGAT
TGTCTTGGGCAATAACTATTCACAAGTCTCAAGGGTTAACTTTGAATAAA
GCATGGATTGATTTAGGAAATACAGAAAGATTTATTGGTTTAGCGTATGT
TGGAATTTCAAGAGTGAGAAAGCTAAAAGATATGATTATTGAGCCAATGA
CATTAGAACGCTTACAAGATATAAAGAgaaggaaaaattttaaatttaga
gaATTAGAAGAACAGAAAATTAACGGCTTGGCACTAGAAACTGAGACAAG
ATTGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046385-exon-scaffold_109-1491911889:317523..318200 | TCONS_00046385-exon-scaffold_109-1491911889:317523..318200 | Clytia hemisphaerica | exon |
| TCONS_00046385-exon-scaffold_109-1510915933:317523..318200 | TCONS_00046385-exon-scaffold_109-1510915933:317523..318200 | Clytia hemisphaerica | exon |
| TCONS_00046385-exon-scaffold_109-1575043694:317523..318200 | TCONS_00046385-exon-scaffold_109-1575043694:317523..318200 | Clytia hemisphaerica | exon |
| TCONS_00046385-exon-scaffold_109-1491911889:318586..318641 | TCONS_00046385-exon-scaffold_109-1491911889:318586..318641 | Clytia hemisphaerica | exon |
| TCONS_00046385-exon-scaffold_109-1510915933:318586..318641 | TCONS_00046385-exon-scaffold_109-1510915933:318586..318641 | Clytia hemisphaerica | exon |
| TCONS_00046385-exon-scaffold_109-1575043694:318586..318641 | TCONS_00046385-exon-scaffold_109-1575043694:318586..318641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:317523..318641 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004386 |
helicase activity |
Blast
The following BLAST results are available for this feature:
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