TCONS_00046381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046381
Unique NameTCONS_00046381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046381 ID=TCONS_00046381|Name=TCONS_00046381|organism=Clytia hemisphaerica|type=transcript|length=1047bp
tcCCTCTCCTGATGCCTCTAGTGGTaatggtgacgtcaccatcaATAAAT
ACCTCGATGGAGGTATCAATCGAGCCCAACTGACGCTACAAGAGCTTCAA
AGTCTTGCGGAGAGACAACGCGAACAGATCTTGTACAACAGTCAAGAACT
TAtggaaaaacaacaacaacttaTGAAAATGCACCACGATTATCGAGCAA
AACTCAAAGCACAACAAGAAAATAATCGCTCTGTCCCTAAAGGGTTGAAA
GCACACGAAAACCACACAACACATACTTCACTTCCACAATCACCCATGGC
TCCCCATAGAACCAACCGTTCCCGCCCCTCCAAAGGCGGTGTGGATCAAG
ACCAGTACGCGAAAATGTTGAGGGCGACTTATCAGAATATGGGGCGGATA
CAGAGCAAGAACCAAATGCAACATAATTTAGATGTCAAGAAGTTTAACAA
CACTGAACTTACTCACGAGTTAGAGAAAGTACGTGCGGCTTTCGCTGCCA
AACAAAACGAACTAGCAGACGCGGTTAAGAAAGTAGACGTATTAACACAC
GAGCTAGAGCAACGTAAGAACGGAGAAAACCATCCGTCCGTACCGACTCC
CGAACGAATCAATCGACGCAAGAAGATTCAAAACGCCAAAGATGAATTGT
ACAGACTCCAAAGTGAACTCATTATTCGAAACGAGATGAATTCTCAGCAA
AGCCATCAGCTTCAACTACAACGTGACATCATCCAGGAAAAGAAACAAGA
ACTCAAAATGCTCAACATCAGAATGGCCGAACTCGGTAACGCTTTACGCC
GCCAACACGGAAGTGGGTTTGACCCACGTCGCTCCATGTCCTACGGGAAA
CAATCGCCGGGACTTTTTAACGGAACTTATTTACAAGACACTCTAAGTCG
GCGCAAACTCAACAACAATAACAGTAAACCGCCGCCAGGACAACGTGACG
TCAACGCTAATATTGTTCCCAGTCCTTCGAAAGACCAACAACAAACGGAG
CGTTCAGaagcgatgacgtcatcgccaTCTACGCAACATTTACGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_109:282925..287364+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046381 ID=TCONS_00046381|Name=TCONS_00046381|organism=Clytia hemisphaerica|type=transcript|length=4440bp|location=Sequence derived from alignment at scaffold_109:282925..287364+ (Clytia hemisphaerica)
tcCCTCTCCTGATGCCTCTAGTGGTaatggtgacgtcaccatcaATAAAT
ACCTCGATGGAGTACGTGAATTCGATTGAATCTACTGCAGCTGTTTTTGA
CAGAATTTGAATTGCTAAGAAAAACTTTTAATGCTATTCACATCCATTTC
TATGACGACTTATAAATGACGAACTATAAATTGAGACTGCAACCTAAAGA
AATTTAGTTGATCCTAGCTTAATGATAAAAATGCTATGTACTTTATACTT
AAAGACTACAACTTCAAACCCTAACAACGTATTATAAACTGTTCTACCAA
ACGCGATGACTTATTTTTGATTTCGTAAGACGGAAAGAGAAATTGACCTT
TTATATAAAAAGGGTGAAAATTCTCTTCACACTGAAAACCGCATTGACCG
ACCACTGTCGAGACAGTCACACAATAaacttgttttgatattttttcttt
tttcctttgaaTTGAATCTCTCTCGCACAAAATAGTctgtttgtttcaaa
attttaagaagaaatcTACCGTCTAATAaccttgtaaaaaaattcacctt
ttaaACCTTCCTTTCTCTTCTTGCTAATTTCCAGGGTATCAATCGAGCCC
AACTGACGCTACAAGAGCTTCAAAGTCTTGCGGAGAGACAACGCGAACAG
ATCTTGTACAACAGTCAAGAACTTAtggaaaaacaacaacaacttaTGAA
AATGCACCACGATTATCGAGCAAAACTCAAAGCACAACAAGAAAATAATC
GCTCTGTCCCTAAAGGGTTGAAAGTAAGTAGTGACTGAATATTCCCATAA
ACATTTATTGACCATAGAACTTCAAAATCTCGGTAATACCATTATTGCAG
GGGCTATACCCTCCACTGGAAATCTTATCAAAATGTTTAGTTCGACTGAG
ATATTTTTTGCTGGTTTTCTAGTTATGTAACGTCATAAACAAAAAGCAAA
CTAAGGCTATTTCTCTTTTATCTTTTAGGCACACGAAAACCACACAACAC
ATACTTCACTTCCACAATCACCCATGGCTCCCCATAGAACCAACCGTTCC
CGCCCCTCCAAAGGCGGTGTGGATCAAGACCAGTACGCGAAAATGTTGAG
GGCGACTTATCAGAATATGGGGCGGATACAGAGCAAGAACCAAATGCAAC
ATAATTTAGATGTCAAGAAGTTTAACAACACTGAACTTAGTAcgaacttc
ttttttttcataatcCCGAGATTGTATTATGGCCTTTCTTTTTCGGTAAT
TTCACAAcaacgtgttttttttttcacactttcacaatgctggacaaaag
gttgtagacacatgaaatttcagtgaaaaatgatgagaaatagNacaatg
ccggacaaaaggttgtagacacatgaaatttcagtgaaaaatgatgagaa
atagagcaaaatgactcttcaatgtgtctgaaaggggatggaaattaaga
aaaacacttttgaagccgTTGCATCGcctttgaattgcttttgagcgaac
cacaagcaaaaaatcagcgttttgatattggtgtaagccagttaatcaag
cccttgtggtttgcccttgcggttagactgtgGGTgatgaaagactttga
aagactttggatGGGTTTGGATGGGCttggatgggtttggaaagcaccca
gaacttgtttttgatcgatattgaagtattttgcaaaccttttgtccagc
attgcaTGTTATCTTGTACTCGTTTTCCTGGAACATCACTCTCGACAGTC
TAGACCATGCAGAACATGCtcttaattttttcttccttatgTTACAGCTC
ACGAGTTAGAGAAAGTACGTGCGGCTTTCGCTGCCAAACAAAACGAACTA
GCAGACGCGGTTAAGAAAGTAGACGTATTAACACACGAGCTAGAGCAACG
TAAGAACGGAGAAAACCATCCGTCCGTACCGACTCCCGAACGAATCAATC
GACGCAAGAAGATTCAAAACGCCAAAGATGAATTGTATAGACTCCAAAGT
GAACTCATTGTATGTCAAATGCTTTTCAATAATCCTTTCTCTTTTATACC
TGTTACAGTTCTCTACTACCTCCTGTAGTGATATTTCACGCATTAGATCG
GGCatataccgggtgtcccagaaaaaagttccgctctttgaagtgaaNTG
ATCAAGTTGacttaatttaataaatgacccctcaaaatttaagtttatcc
ttcctctttccaatgcaaaaagattcattatctaaaagttcatagaactt
gagaaaattcacttcaaagagcggaacttttttctgggacacccggtata
taTTAATTTCTACGTAGGATACTGCACTCTTCTTCTCTTAGCTTTGTCTG
GCCGTAGTTTCTAACCCCTGTATTACGTACAATGTTTGTGTTGCATGTAC
AATGTTTGTGTTGCATGACCCAATTAGCGAGAAAATAATCCCGCAAATTA
TCCTAGTTCTAAAATCTAGATTCTTTACACCCTCATCCATTCCAGATTCG
AAACGAGATGAATTCTCAGCAAAGCCATCAGCTTCAACTACAACGTGACA
TCATCCAGGAAAAGAAACAAGAACTCAAAATGCTCAACATCAGAATGGCC
GAACTCGGTAACGCTTTACGCCGCCAACACGGAAGTGGGTTTGACCCACG
TCGCTCCATGTCCTACGGGAAACAATCGCCGGGACTTTTTAACGGAACTT
ATTTACAAGACACTCTAAGTCGGCGCAAACTCAACAACAATAACAGTAAA
CCGCCGCCAGGACAACGTGACGTCAACGCTAATATTGTTCCCAGTCCTTC
GAAAGACCAACAACAAACGGAGCGTTCAGaagcgatgacgtcatcgccaT
CTACGCAACATTTACGTAACGGAATGGTCAATGGCGGACATTCATCTAGC
AGTAAATCGAAATCGAACTTTGAAGATGCTCCAGTGTCCGGGAACCAGGT
TTGGCGAACTGACCCGAAGAAGAGTTTGAACTTTGACAACCAACCACAAC
AGAAATCCTCTCCTCTCCATTCGCCTGCATCCTCTATCTCATCTCTTTCT
TCACTCTCCTCTGCTTCCGCTACTCCTGATGAATCAGCACCCTCGAATAA
ACCAGCTTTCCCCTTTAAAGAGGCTCCACCGGCGCCGCCAACCCGCACCA
CACCCGTAGGGGTCTTAATCGATCACAACGAACCATCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtgaaagactttgaaagactttggatggatttggatgggtttgga
tgggtttggaaagcacccagaacttgtttttgatcgatattgaagtattt
tgcaaaccttttgtccagcatgtTATCTTGTACTCGTTTTCCTGGAACAT
CACTCTCGACAGTCTAGACCATGCAGAACATGCtcttaattttttcttcc
ttatgTTACAGCTCACGAGTTAGAGAAAGTACGTGCGGCTTTCGCTGCCA
AACAAAACGAACTAGCAGACGCGGTTAAGAAAGTAGACGTATTAACACAC
GAGCTAGAGCAACGTAAGAACGGAGAAAACCATCCGTCCGTACCGACTCC
CGAACGAATCAATCGACGCAAGAAGATTCAAAACGCCAAAGATGAATTGT
ACAGACTCCAAAGTGAACTCATTGTATGTCAAATGCTTTTCAATAATCCT
TTCTCTTTTATACTTGTTACGGTTCTCTTCTACCTCCTGTAGTGATATTT
CACGCATTAGATCGGGCATATATATTAATTTCTACGTAGGATACTGCACT
CTTCTTCTCTTAGCTTTGTCTGGCCGTAGTTTCTAACCCCTGTATTACGT
TCAATGTTTGTGTTGCATGTACAATGTTTGTGTTGCATGACCCAATTAGC
GAGAAAAAATCCCCCAAATTATCCTAGTTCTAAAATCTAGATTCTTTACA
CCCTTATCCATTCCAGATTCGAAACGAGATGAATTCTCAGCAAAGCCATC
AGCTTCAACTACAACGTGACATCATCCAGGAAAAGAAACAAGAACTCAAA
ATGCTCAACATCAGAATGGCCGAACTCGGTAACGCTTTACGCCGCCAACA
CGGAAGTGGGTTTGACCCACGTCGCTCCATGTCCTACGGGAAACAATCGC
CGGGACTTTTTAACGGAACTTATTTACAAGACACTCTAAGTCGGCGCAAA
CTCAACAACAATAACAGTAAACCGCCGCCAGGACAACGTGACGTCAACGC
TAATATTGTTCCCAGTCCTTCGAAAGACCAACAACAAACGGAGCGTTCAG
aagcgatgacgtcatcgccaTCTACGCAACATTTACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029599XLOC_029599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046381-exon-scaffold_109-1491911889:282925..282985TCONS_00046381-exon-scaffold_109-1491911889:282925..282985Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1510915933:282925..282985TCONS_00046381-exon-scaffold_109-1510915933:282925..282985Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1575043694:282925..282985TCONS_00046381-exon-scaffold_109-1575043694:282925..282985Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1491911889:283509..283697TCONS_00046381-exon-scaffold_109-1491911889:283509..283697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1510915933:283509..283697TCONS_00046381-exon-scaffold_109-1510915933:283509..283697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1575043694:283509..283697TCONS_00046381-exon-scaffold_109-1575043694:283509..283697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1491911889:283903..284113TCONS_00046381-exon-scaffold_109-1491911889:283903..284113Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1510915933:283903..284113TCONS_00046381-exon-scaffold_109-1510915933:283903..284113Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1575043694:283903..284113TCONS_00046381-exon-scaffold_109-1575043694:283903..284113Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1491911889:286486..286697TCONS_00046381-exon-scaffold_109-1491911889:286486..286697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1510915933:286486..286697TCONS_00046381-exon-scaffold_109-1510915933:286486..286697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1575043694:286486..286697TCONS_00046381-exon-scaffold_109-1575043694:286486..286697Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1491911889:286991..287364TCONS_00046381-exon-scaffold_109-1491911889:286991..287364Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1510915933:286991..287364TCONS_00046381-exon-scaffold_109-1510915933:286991..287364Clytia hemisphaericaexon
TCONS_00046381-exon-scaffold_109-1575043694:286991..287364TCONS_00046381-exon-scaffold_109-1575043694:286991..287364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:282925..287364 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.57076	2.61898	2.87757	3.69835	0	0	0.0058392	0	0	0	0	0	0	0	0	4.84704e-08	0	0	0	0	4.11478	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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