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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046345 ID=TCONS_00046345|Name=TCONS_00046345|organism=Clytia hemisphaerica|type=transcript|length=4814bp
AGCCACACTACATCAAAGATGGTGCCCTGACGGCggccaatttaaaaatc
tcaaaCTTTCAGAAACCAGCTGCAACTTTCAGCAATCAACACTCTCCTAT
CGCCTTATGTGTGCTTTGATAACCAATCAAAGTAGTTGTTTAGTAAAGAG
ATTGGGAAAAAATGGAGATTGATGAGATaaagattgagtttaatgatgTA
CATGAATCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATT
GCACGATTCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGG
AAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTA
CAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACC
TAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATA
AAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCCGGACGAAGA
TGGGCGTATTACGAGTTCTTTTATTCCAACATTGATAGAGCTTTACTACT
GGGATGTAATGATTTTGAGATCTGTCTAAAGCAGATGTTCCAAGATCTGA
AAACAAGGATGTTGACTAGACGCCAGTGGTCCAATATTCGTCGACTGATG
GGCAAACCCAGGAGGTATTCAGCTGCATTTTTGAAAGAAGAACGTgcaat
tttagaagaaaaacgaaagaaaattcGATATCTGCATCAACTGAAAGGGT
TTGAGGTGACAGATATGACACAATTCAAAGacTTACCAGAAGAAGTGCCC
ACCCCAATGGTTATAGGAACTAAGGTGACAGCGAAAGTTCCAGATTATCT
TCAAAAAGATGGATTGAATCTTTTCACTGGCAGCATTGATGCTGTAGATA
ATGTAAACAATACCTTTAGAATCATCTTTGACAGAGAGGGTATTGGATCG
CATTCAATCCCAGATACTGACGTCTCCAGTGAAGAATATGAATCAATGAA
TTTACAATTATTCGTCGTCAAAGAAAGACCAAAAGTAGCAGAGTCGACAA
ATCAAAAAGTGGACAAGAGCGATGCCAATTGTTCTCCAACACGATTACGT
CTGAAGGAAGAACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTCC
TGTTCACTTCTTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCCTCA
AGAAAGAATACGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAATTA
GCTCAACCTTTTGGTTATATTAAGAAGGACTTTCAACGGGATTATGCATT
CGTTGTTCTGGAATTGGATAAAATCAATACAGAAATGAATGATATTTTCG
ATAATATTCAGCATTATATACACACTGATGCGCCACACATGGGTGCTCTT
GATCAATCTTTAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGACTT
GATTGAACAATCTCAGTGTATTTTGCACGATGAACATATGTTAACTCTCA
CAAAGCAGTTCACCTCACTAATGCTACAAATTAATCACGTTGCTGAAAGT
GAGGAGCCGTGTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGAAGA
GATTAAAGAGACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACCAAG
TGGAGATTAGTATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAGT
AGTTTGTCTGCGTTTTCACATAAGAAACAACAGGAGAATTTGTTACCGTT
GGTAGATAATCTGGATGACAATTTATCTTcgaatgatgaaaatgataatg
ATGACGATGACGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAATA
AAAGAGGAAGATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGATCTG
GGCTGATCATAAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTTACA
ATAATTTAAGGCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGATCA
TCTCCCAGTTTTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAGt
agactctctctaattcgaacttctattattcgaatctttctaaaaTTCGA
TTTAAAACACTGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTATA
ATTTGAACCTTTTTATGATTCGACAAAAAGCCCTCgtctcttgaagatcg
aattatagagagccGCCTCTCGTACTATGTAATAAGGATGATGCTGAGTG
AATGATGGAATTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTGACT
ACAAGTTCAATTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCAA
ATAATACTGCACtgcatttttatgaaatttcttaGAAATGATTTTAATCC
ATTTTTATATCTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTTTTT
AAGGCATATATTATCACTTTTGTACATACACATATAGGACATGATAATGA
CatgaaacaattctttttttaaatcgatTCAATTATTCCCGGAGTTTTGT
TTGAGAAATCTTTCAATGTTGAagctttcatttttcattttttaaaggtA
AAAATCTATACATGTAAAACTTAAAAATAGAATATATTGAAAACTCGAAT
TCAAAAAGATGTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTGACA
CGAGAATTAAAACACATTGGAAACGTTGGTTCCATCAGATGCTCCTCATC
GAAATATCCAATCAGTCGATACCCGATCGTTGACGATGGAGATGTGGAAA
ACATGCCAGAGGATATCAAACAACGAATGCTGGATGTCAAAGAAAAGAGT
ACCTTCTTACCAAACGTGTTCAAAACATTGGCGCATCGTCCAGACGAATT
TCGATCATTCTTCAATTATTATGACGTATTGATGGAGGAAACATCTCTCC
TTACCAAGGCTGAAAAAGAAATGATCGTTGTAGCTACAAGCACCATTAAT
AACTGTAATTACTGTCTAGCATCGCATGGTGCTCTATTGAGAATCTACTC
CAAGAATCCACTCCTTGGTGACCAAGTCGCTGTCAATCACCAACATGCTG
ATATCACAGACCGTCAAAAGAGAATGTTAGATTTTGCCGTTTTGGTAGCT
AAGGGACAACCCATATCTGATGAAGAGTTTAAAAACATGAGGGAATCTGG
TTTTTCGGATCAAGAGATTTGGGATATTGGAGCCATTGCAGCTTTCTTTG
CTTTGAGTAATCGGATGGCACACTTGACCAATATGAGACCAAATGATGAG
TTCTATTCGCTTGGACGCATCcccaaagataaaaagtgaacTTACTTATA
AAGTGGTGGTCGTCCTATAGAGCAttatttaaattgaaaataaaatgatg
aTATTGATGTTTTCACTTTATGTCTTTCATTTGAAAAGGTTATGTATGCT
GGAGAAAATTGATTTAATAGGGAAAATGATTTATTTGTTCAACTAATTAT
TTGGTCAATTCTTGGGATGCTGAATCTTTCAACATGGACGTGTTTTgata
atgaaattgaaaaattgtttttttgtgattttggtgTGATTACCTCTTTC
TTCAATCCTTTATGGCTTGACATTGATTAAATTATATTCAGCATGGTGCT
ATTCTGACGTGTATGTTGACCGGATTTTTTCAGTTTACTCTGACTTTGTG
ATTGGGTTGTTTTTGGGCTATGCTCGGGGACATTTTTATCTGTCCAAACC
AACCAGCAAATTTCGAatagtgaaataaaaaaaaaatttgtaaataaaat
agTGTTTCTGCATTCAATTTAATTACTGATTAGATTAGTCATACGTTTTC
AAGTGTGTAAAAGCATTTCTAGTCATTTATGGTTCCACGCCAATTTGTTT
TGGTAAAATTCGCTGTCTCATTATCACTGCACTTGCTTTTGAGTCTGGGA
TTGACGTCTACACACATTATTATATCTAATTCATAAGTACCTTTATAAGC
ATAAAACCAAGTCCACTGACTCGTGTTTGGTGGTCATTTTTCATTACTCT
GACTTTTTTCAAAGCACCTAAAAGCTGAAAAACCATCAAGCTTAGGACAA
AGCTTATCTGATTAGGATCCATTTTTTAATTATCActaaatgaatttttt
gaatatCATTACAATTTTTTGTATTGATTTTGAGACCTTTGAAATTGCTT
ATAAAGAGATGAGAGACAATCTAACAAAGTTTGGCTATACAAATAGGTGA
TTCTTATTTTGTAAATTGACGCGTCTGTGTTCTGTTGTGTCATTTTGTTG
ACAcattatttatttactttcatTCGTAAAACAGTCACTTGTTGAGCTCG
AAAACCGACACCCCCTTTTTCTCTTGATAAATTGTTAACTTTCATTGACA
CTTTCCCTTCCatgtacaaaaacaaaaaaaaatgaattttattaaaAGGA
CACTCGACGAACTTGATCATTTTTGTTGTCAACTTGGTGCATCGTATTTT
TGGTAGAATTTATATCgtgttatttgattttttcagtCTCTATTTTGTAG
TTATCACAAATTTTGTTAGTGGACCCTGCTTTATATGTATCTCGATCGAT
TTTATGGTTTCTGAGTCAAAGGAAATCTAAATTGTATATCTATGGATAAA
GGTTTTCTGGTTATTCTTTATAAAGActtctttaaaacttttttttcatt
tcatagtAGATTCAGAACCATTTTAAGATTATAAAATCATATGCATCCAT
CTAAGTTGAAACTATTCAGTGCGAATTTTTGTTCATCTTTTAATTATAAT
TATGTCCCCCATTA Run BLAST on NCBI transcript from alignment at scaffold_109:70489..82919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046345 ID=TCONS_00046345|Name=TCONS_00046345|organism=Clytia hemisphaerica|type=transcript|length=12431bp|location=Sequence derived from alignment at scaffold_109:70489..82919+ (Clytia hemisphaerica)
AGCCACACTACATCAAAGATGGTGCCCTGACGGCggccaatttaaaaatc
tcaaaCTTTCAGAAACCAGCTGCAACTTTCAGCAATCAACACTCTCCTAT
CGCCTTATGTGTGCTTTGATAACCAATCAAAGTAGTGTAAGTTTAAAGTT
GATGTTATTTTATGATCACCCATTTGCGACGATGttctgatgtttttttt
ttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCCATG
ACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACGCAG
GGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGGTAAACTTTGAATT
TTTAGCAGTCCAGCTTTCTGTGCGATTTTGAGCTTCGCTGCGAAACGCAA
CCAGAAAGAGAAAACAAGACCCCTCCTGTTTTAACCAGTCAAGTACCAGA
CAGtactaattgataaatttgatTATCCAAACAAAGTAATCGAtaaggcc
aggcccaattgattgtttggttcgtgtcctagaAGCTTTGATAAATGGGT
TGGTccgtcagtcggtcggtcggtagctaAAGGCTAAAGATggaacattt
tttcattttcccaccaaaaacctccatttttgaaattcctcaaGCAATCG
CGCAATTCTAGAATCCAACCACGACTGTAAAGAAATAGCCTAAAGCCCGG
ATCCTCAAAGGCCAAGgcacgcgctgcgatcgcaaGATAACTTCTAGTTG
AAGATTAAGACGTTTGCGGCGTGTGCTTTAAAGGAATATAGCTGTAGACT
CTCTCTGCTTTTTAGGTGTTGATATTTGTTTTTACNGAAAAGGTCTATAC
AGCTGTAGACTCTCTCTGCTTTTTAGGTGcttgatatttgtttttaagta
ccCCCGTGGGTTACACCGGGACATTTTCTGTGCACAAAGTGGATGTTGTT
TATAGAAGAATCAAAGCAGTCAGttataaaaaaagaacagcAGAGATAGT
AGTTATCATGTGAAAAGGaggtagaatttttttgatttttcctactcaaa
gtgaaacactttttctcaaaaatttacaGTTGGTTggaggacacgaacca
aactgTCAAttgcagtgctgcaaataacggccggtgaccggtaattaccg
gtcattttTAAGCTAATATGTGTGTTTTTTCCCGAGAAATTTTGATGGTT
TCATTGTTAGTGATTTCTGATTGAGTAATCACCGTCCAAATTGAAattcc
ttatttgcagcactgaatTGGGCCTGCCCTAATGATCAAAGTAATCGAAC
GACTATTTATcgtttatcaaattttgagtaccaaaatttcaaaaacattg
tgAGTCTTCGATCACTTTCTTAATAAATTATCGGAGAGTAtatatagacc
taactcttcatacaaaactTACcagaaacgcatatttggactttgtaccc
tatgctgcacacaagcacttaagccaaagtcctgcaaaggcgggacaaaa
atcagaagtttgcaaaaaacgcCACGTacaagatctttcaaattcagtat
gcgaatagagcagtaaaaaatacaacttttcctatttttcttattttttg
caaaagttctaggaacgAAAATAAAGGGATATATCCGCTGATGATCCGCG
GTGCCAACTATTGTAACAATAACCAtttgagtactttgattgttattgat
tacttccgataacttcgataaccaattgattacttcgataaccAATACCG
ATACCTTGGAaaaaggcgctgtggtatagtggtcattgaccttggttact
gcacaggcgactgaggttcgattcccactcgcagcggttcacttggcaag
tgaatgaacccatgccatgtgaggggaattgggtagtcagtccaaggtgc
tggcggggcgctcattgaaagcgtctatagttgcgaaaataggcctcaaa
gcctcctgcaactcaaccaaatagaaaaatagaaataggaaaaaccaaaa
acagTGACCTAAAACCAAACCACAAAAAGAAGCCATAAGAATCACCTTCA
GTACTTCCCCGTTTTGAATGTGCTTGCTCTGGGTTTCCTTAAATAAACCA
AATCACGCATTTTGATTGGTCGGAGAGAGCAAAAGTGGTTTTCCCACGTA
AATCGCGTGTTTTTATTGTACAAAATAAACTATTTTATTGGACGAGATGA
ACTCAGTTTCAGATTCCATCGCTTTGCTACAGGAAGCATATCCGACACaa
tcgaaggtattcaatatgatcgaaagTGATTGAACATACAATCaaacaaa
tcgaaaatggtCAAAGAAAATGCCATGATTAAGAGTTGAGGGATTATTCA
ATCACCGATAGAATCAATAAGTGGTCACTGATCaccttcgattattatcg
atcattattgattacttcgatcacaatcgaatgttcgattagtaccgtct
ggttttaagtttgtttacatatgactcgattttgctagtCTCCATCTGtc
catttccaacaaaaagcagttatgaaaacaaaagtaaacgAGTCATAGTG
TGCCTACTAAttgcgagggtgtcaaataccacgtgtttcTGCGTGTTTAA
TAGTAAAATTAACgttagaaatttttgtttatttactttttttaactttt
ctgctgattcagcattctgCTGATTCAGTTGATAAAGTATAGATAAACGA
ATAAATAAAATAGCaaagtagcgagttgataaagcaacagataaacaaat
gaagaaaGTAGCAAAGAAGCGAGTAGAAAAAGCAATAGAttaacgaatga
agaaagtcaGGAGGTATTTTTTAACTTCGCATTTTTGagttagaaaatct
tttttggtcgctaaatctaaaattcacttcGCAACTaaagcacttaagct
aaagtcccgcaaaagtgggacaaaaatcagtttcttgaagtttgcaaaaa
aacgccacatagaagacacaacttttgttgacgtcaaaccaaaggtttta
tttttccgtgaactttgaacccttctaacattttttctatgtatgctaaa
gcatTCCGGattttactaaaagaaagcctgtgatcttagctttcaagcgg
tatataacactgtggacacgggctagacggcaaatttgTCTGCTACGGGA
ATGAAAAAAGTTGCAACTATTGatgaacaaatgtttctggaaatggagga
actcatagttgaaggctgaaactctgtatgtttatcagaaaaaggttgag
gaattcaaaaatcgctagttctagttctttcatcttcatgtagttttttt
tagcatgggaatgtcccaaaaatcagggttttctcctttttctttactta
taactttttgttcctccatttccagaggcctaccaccttttttggctcat
ttcaaccttttccaagctattttcttcaaaaacaaaaataaaacaatgca
atgtcttcttttctcaaaaaaaggatatatcttttgttatcttgataaat
atactaaatattttacaaatatttttatataataatattctaacaccatc
aaagaattccaTAGCGCCAGCCTGGATTTAGGTCCCatgcaaaaattagg
tcccccctgagttttaagtccccccaaagaaTTATGAATCTTTTGTTAGC
CCCAAGgacttttgactttttagacactttcaaaaaattgatccagtaaa
aaagggttttccaatTTAAATTGTGTTCAGTTCTAAGTTTTTAAGATCAA
ATATTTTGCACACTATTTATAAATATATTGCGCCGCAgactaaaaatttt
cagattcatgagcttcaatttgagtaattgaaccaactattaagctgaat
tattttagcccccacgtaagtgatgagattttagttCCCCCCAAGTAAAT
AGATCCCCCTAAAAAAGTGGCGTAGTTCCAGGCAtctccttttttgggaa
agaTTTGGGGTGTAACCCCTCCCCCAACCAGCagggggggctgacgctat
gaattctccctccaaatttcaggtctctagctacactagaaaaagagata
tgcaaaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCAGGT
AGGTCTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTGCCAATTTGA
GATGTTCATTTTGtgtgagataaaaatttcgcAGCGAAATCTGAAATTTT
AGCCTGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaattttttccc
aaaatgggtatattcaaaaatttagaatattggggaaacttttttccaaa
aatgagaaaattggGAGAACATTTTTTCcctaaaattagaaaattctttt
aattctgaaaatcagaaaatcggggtaactttttcaaaagttggaaaaat
caaggaaaatttttctcaaaaatgcttgAGAAatccaacttttcaaaaat
tgcacAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAATGCATGAGAG
TTGCTGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGCTATTTTAAT
TAAGGTCTATAAATTCCATGCTATCAGTTTATATTTGTGAATGACCAAAA
TCTATCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTTTAGGTAGGA
GACCTATTTCACTGATACaggaaaatctcaaaaaaatacATAGAGGACAg
ttaaaaacaaagttttcacGAAAATTCTTTACAAAAGTCctcattttctt
ctttgtcaaattttttcattgcaatttttaaattttcatattcaagGATA
GTTGCTCTACCAGAAAATGTATATCATACCAaagttttgtgggctacatc
aggcagaaatttGTATTGCGTATGtgtcaaatatgaaaaattggtcagag
ccctttaaaagaaccatttgaTAATCAATCGATTCAATCTATAGATAATC
AAGCCTTCCTTTAAAATCCTGATAATAGATTACCAATTCTTATTGattat
tggaattttttattgatCTATTGGTcatcaattgaaaaaaaattgttgat
ttgtCAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGATATCTCTTAA
AGAaacattgaaaagctttttctaGAGGGTGCTAGCAATATGCAGAATTA
AGTGTTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTTGTATCTCAG
GAAAGATTAAACATTGTTAAAACAGGctaaaaaattaaagatttttgaaa
tgtttcctCTTGGTTCGGTTCAAGTTGATAATTTgttataattttatttc
ttacaAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGATTGATGAGAT
aaagattgagtttaatgatgTACATGAATCGCCCATGGAACATGAAGTTC
CTGCTCAAGCCCTCATGACATTGCACGATTCTGTACAAAACATGCCAAGT
AAACAAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTTACAATTGTC
TTGAATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGTCCTTTTAAT
TTATATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAATACTATTGT
CGTTTCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTCAGACAGTAC
TAAAAgggttttcaagtttttttttgcatgataCCCCAATAGCACCACCC
CATCATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTTGAACTTACA
AAATGGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCATTCGTTAAT
TACCAGCACTTCTCGGGACTGACTGataaattttttatgatttcttGAGG
TTTTCTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATATAATGTTTCT
GTTGATCAGCCAGGTGGGTCTATAAAATTAAAGTATCacttattttttat
taatttagcAAACATTATAGGCATAtgattaaaatgtaaaaataactttt
tttaaaggagaaaattattttcgaaaaatttagggaaaattctaaaaaag
atttaaagaagATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTAT
AAaaggattttaatttttttggtatacCATAACAATTTCACTTTAACGTC
acgatgtctgagattttaatatgctaaaatttccagggttaAAAGATTGA
TTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAA
CATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTC
CACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATC
ACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGA
ACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGAT
TTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTACACCTCAATTAA
AAACACTTTGAAGCAATCATCCGGACGAANTTTTTTATTAATTTAGCAAA
CATTATAGGCATAtgattaaaatgtaaaaataactttttttaaaggagaa
aattattttcgaaaaatttagggaaaattctaaaaaagatttaaagaagA
TAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTATAAaaggatttta
atttttttggtatacCATAACAATTTCACTTTAACGTCacgatgtctgag
attttaatatgctaaaatttccagggttaAAAGATTGATTGACCATGTCT
GGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAACATAAGTCAGGT
TTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTCCACTGTTTTATA
ATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATCACCAATCAAACG
GCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGAACCAATATTCGC
CCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGATTTCTCACAAGAA
CAATTGGAGAGCATGAATAAAAACTACACCTCAATTAAAAACACTTTGAA
GCAATCATCCGGACGAAGATGGGCGTATTACGAGTTCTTTTATTCCAACA
TTGATAGAGCTTTACTACTGGGATGTAATGATTTTGAGATCTGTCTAAAG
CAGATGTTCCAAGATCTGAAAACAAGGATGTTGACTAGACGCCAGTGGTC
CAATATTCGTCGACTGATGGGCAAACCCAGGAGGTATTCAGCTGCATTTT
TGAAAGAAGAACGTgcaattttagaagaaaaacgaaagaaaattcGATAT
CTGCATCAACTGAAAGGGTTTGAGGTGACAGATATGACACAATTCAAAGG
TATCTAGATTTTACACATATCTTTATGCCTGATAGTTCTATCATATAGTT
TCTATCAAATGGTGCATAGGTTGTGACCCTGCTTATCAGTTAAAAAAGAC
TGTGAGATAATGCACCCTTTCCCCTGGAATGACCGTGGAGTCAGTTCCAA
AGTTTGAGACCTTTAGAGTATTCAGAAATCTATCatttaattttattatt
attagacTTACCAGAAGAAGTGCCCACCCCAATGGTTATAGGAACTAAGG
TGACAGCGAAAGTTCCAGATTATCTTCAAAAAGATGGATTGAATCTTTTC
ACTGGCAGCATTGATGCTGTAGATAATGTAAACAATACCTTTAGAATCAT
CTTTGACAGGTACGGCCcaatttatttttcgttttcgtttgCTTCAGACA
AATATTTTGTTCCAGGAATCCTTATATTCTGGCTTCTGATTTTAACAAAC
CGAAGGAATTTTTCAGGTACCATtactaatttaaaaaaaattgtttttgt
ttatattatcGTTGTTTAGAGAGGGTATTGGATCGCATTCAATCCCAGAT
ACTGACGTCTCCAGTGAAGAATATGAATCAATGAATTTACAATTATTCGT
CGTCAAAGAAAGACCAAAAGTAGCAGGTACATAGAATACACTCATCTTTA
GGCAAACTTAATATTTTCATCTTATAAATTCTTTATAGCAATTTTTCCAC
AGGAACTGTTTGTAGTTCCTTGATTTGCATTTAAGAATTCAACTTTATCA
GCATTCATTTTATTGGCTTATATAATGATGATGATCCAGGTCCATAGACA
CGGAGTTAAAGTTGCTTGTTCGAATCCCTTGAAAGCTGAACTGGCTGGCT
CTGGGCCCCCAAAAAAATAATCTAAGTACTATATTACTATGTTTCGAAGC
CTCTATTGTATAAGAGAATCCATGTAGATGAAAatagagaagtttttttt
tatgaattatttttcttgaTTGTATTTGTAGAGTCGACAAATCAAAAAGT
GGACAAGAGCGATGCCAATTGTTCTCCAACACGATTACGTCTGAAGGAAG
AACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTCCTGTTCACTTC
TTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCCTCAAGAAAGAATA
CGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAATTAGCTCAACCTT
TTGGTTATATTAAGAAGGACTTTCAACGGGATTATGCATTCGTTGTTCTG
GAATTGGATAAAATCAATACAGAAATGAATGATATTTTCGATAATATTCA
GCATTATATACACACTGATGCGCCACACATGGGTGCTCTTGATCAATCTT
TAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGACTTGATTGAACAA
TCTCAGTGTATTTTGCACGATGAACATATGTTAACTCTCACAAAGCAGTT
CACCTCACTAATGCTACAAATTAATCACGTTGCTGAAAGTGAGGAGCCGT
GTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGAAGAGATTAAAGAG
ACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACCAAGTGGAGATTAG
TATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAGTAGTTTGTCTG
CGTTTTCACATAAGAAACAACAGGAGAATTTGTTACCGTTGGTAGATAAT
CTGGATGACAATTTATCTTcgaatgatgaaaatgataatgATGACGATGA
CGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAATAAAAGAGGAAG
ATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGATCTGGGCTGATCAT
AAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTTACAATAATTTAAG
GCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGATCATCTCCCAGTT
TTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAGtagactctctc
taattcgaacttctattattcgaatctttctaaaaTTCGATTTAAAACAC
TGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTATAATTTGAACCT
TTTTATGATTCGACAAAAAGCCCTCgtctcttgaagatcgaattatagag
agccGCCTCTCGTACTATGTAATAAGGATGATGCTGAGTGAATGATGGAA
TTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTGACTACAAGTTCAA
TTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCAAATAATACTGC
ACtgcatttttatgaaatttcttaGAAATGATTTTAATCCATTTTTATAT
CTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTTTTTAAGGCATATA
TTATCACTTTTGTACATACACATATAGGACATGATAATGACatgaaacaa
ttctttttttaaatcgatTCAATTATTCCCGGAGTTTTGTTTGAGAAATC
TTTCAATGTTGAagctttcatttttcattttttaaaggtAAAAATCTATA
CATGTAAAACTTAAAAATAGAATATATTGAAAACTCGAATTCAAAAAGAT
GTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTGACACGAGAATTAA
AACACATTGGAAACGTTGGTTCCATCAGATGCTCCTCATCGAAATATCCA
ATCAGTCGATACCCGATCGTTGACGATGGAGATGTGGAAAACATGCCAGA
GGATATCAAACAACGAATGCTGGATGTCAAAGAAAAGGTATTGTGAACTT
TTTTATCCGTTCAACTCGTTTATATATCTACCCATTCATTCAGAGCAATG
ATTGAGAATGGTTGTTTTGGGGTGTTTTTCCCACCTCACAATCTGTTCTT
CAATTTATGGTTTGATGAGAAAGTTCCAAACTTGCTAATAATAAATCATT
CATCTTATTTTCATTAAGCTTTTTGATTTGTTGGCTTTCTAAATTAATTT
ATGATTCTTCAGACAAACTTTTATTTTGACGATGTCCTGTCTTAAAAAAA
CACCTATTTTATAGAGTACCTTCTTACCAAACGTGTTCAAAACATTGGCG
CATCGTCCAGACGAATTTCGATCATTCTTCAATTATTATGACGTATTGAT
GGAGGAAACATCTCTCCTTACCAAGGCTGAAAAAGAAATGATCGTTGTAG
CTACAAGCACCATTAATAACTGTAATTACTGTCTAGCATCGCATGGTGCT
CTATTGAGAATCTACTCCAAGAATCCACTCCTTGGTGACCAAGTCGCTGT
CAATCACCAACATGCTGATATCACAGACCGTCAAAAGAGAATGTTAGATT
TTGCCGTTTTGGTAGCTAAGGGACAACCCATATCTGATGAAGAGTTTAAA
AACATGAGGGAATCTGGTTTTTCGGATCAAGAGATTTGGGATATTGGAGC
CATTGCAGCTTTCTTTGCTTTGAGTAATCGGATGGCACACTTGACCAATA
TGAGACCAAATGATGAGTTCTATTCGCTTGGACGCATCcccaaagataaa
aagtgaacTTACTTATAAAGTGGTGGTCGTCCTATAGAGCAttatttaaa
ttgaaaataaaatgatgaTATTGATGTTTTCACTTTATGTCTTTCATTTG
AAAAGGTTATGTATGCTGGAGAAAATTGATTTAATAGGGAAAATGATTTA
TTTGTTCAACTAATTATTTGGTCAATTCTTGGGATGCTGAATCTTTCAAC
ATGGACGTGTTTTgataatgaaattgaaaaattgtttttttgtgattttg
gtgTGATTACCTCTTTCTTCAATCCTTTATGGCTTGACATTGATTAAATT
ATATTCAGCATGGTGCTATTCTGACGTGTATGTTGACCGGATTTTTTCAG
TTTACTCTGACTTTGTGATTGGGTTGTTTTTGGGCTATGCTCGGGGACAT
TTTTATCTGTCCAAACCAACCAGCAAATTTCGAatagtgaaataaaaaaa
aaatttgtaaataaaatagTGTTTCTGCATTCAATTTAATTACTGATTAG
ATTAGTCATACGTTTTCAAGTGTGTAAAAGCATTTCTAGTCATTTATGGT
TCCACGCCAATTTGTTTTGGTAAAATTCGCTGTCTCATTATCACTGCACT
TGCTTTTGAGTCTGGGATTGACGTCTACACACATTATTATATCTAATTCA
TAAGTACCTTTATAAGCATAAAACCAAGTCCACTGACTCGTGTTTGGTGG
TCATTTTTCATTACTCTGACTTTTTTCAAAGCACCTAAAAGCTGAAAAAC
CATCAAGCTTAGGACAAAGCTTATCTGATTAGGATCCATTTTTTAATTAT
CActaaatgaattttttgaatatCATTACAATTTTTTGTATTGATTTTGA
GACCTTTGAAATTGCTTATAAAGAGATGAGAGACAATCTAACAAAGTTTG
GCTATACAAATAGGTGATTCTTATTTTGTAAATTGACGCGTCTGTGTTCT
GTTGTGTCATTTTGTTGACAcattatttatttactttcatTCGTAAAACA
GTCACTTGTTGAGCTCGAAAACCGACACCCCCTTTTTCTCTTGATAAATT
GTTAACTTTCATTGACACTTTCCCTTCCatgtacaaaaacaaaaaaaaat
gaattttattaaaAGGACACTCGACGAACTTGATCATTTTTGTTGTCAAC
TTGGTGCATCGTATTTTTGGTAGAATTTATATCgtgttatttgatttttt
cagtCTCTATTTTGTAGTTATCACAAATTTTGTTAGTGGACCCTGCTTTA
TATGTATCTCGATCGATTTTATGGTTTCTGAGTCAAAGGAAATCTAAATT
GTATATCTATGGATAAAGGTTTTCTGGTTATTCTTTATAAAGActtcttt
aaaacttttttttcatttcatagtAGATTCAGAACCATTTTAAGATTATA
AAATCATATGCATCCATCTAAGTTGAAACTATTCAGTGCGAATTTTTGTT
CATCTTTTAATTATAATTATGTCCCCCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046345-exon-scaffold_109-1491911889:70489..70624 | TCONS_00046345-exon-scaffold_109-1491911889:70489..70624 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:70489..70624 | TCONS_00046345-exon-scaffold_109-1510915933:70489..70624 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:70489..70624 | TCONS_00046345-exon-scaffold_109-1575043694:70489..70624 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:75797..75959 | TCONS_00046345-exon-scaffold_109-1491911889:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:75797..75959 | TCONS_00046345-exon-scaffold_109-1510915933:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:75797..75959 | TCONS_00046345-exon-scaffold_109-1575043694:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:77407..77887 | TCONS_00046345-exon-scaffold_109-1491911889:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:77407..77887 | TCONS_00046345-exon-scaffold_109-1510915933:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:77407..77887 | TCONS_00046345-exon-scaffold_109-1575043694:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:78094..78247 | TCONS_00046345-exon-scaffold_109-1491911889:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:78094..78247 | TCONS_00046345-exon-scaffold_109-1510915933:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:78094..78247 | TCONS_00046345-exon-scaffold_109-1575043694:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:78408..78514 | TCONS_00046345-exon-scaffold_109-1491911889:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:78408..78514 | TCONS_00046345-exon-scaffold_109-1510915933:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:78408..78514 | TCONS_00046345-exon-scaffold_109-1575043694:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:78870..80675 | TCONS_00046345-exon-scaffold_109-1491911889:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:78870..80675 | TCONS_00046345-exon-scaffold_109-1510915933:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:78870..80675 | TCONS_00046345-exon-scaffold_109-1575043694:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1491911889:80953..82919 | TCONS_00046345-exon-scaffold_109-1491911889:80953..82919 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1510915933:80953..82919 | TCONS_00046345-exon-scaffold_109-1510915933:80953..82919 | Clytia hemisphaerica | exon |
| TCONS_00046345-exon-scaffold_109-1575043694:80953..82919 | TCONS_00046345-exon-scaffold_109-1575043694:80953..82919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:70489..82919 + |
Blast
BLAST of TCONS_00046345 vs. Swiss-Prot (Human)
Match: LIN9 (Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 1.760e-98 Identity = 192/486 (39.51%), Postives = 294/486 (60.49%), Query Frame = 3
Query: 327 KRPRLEGLQDNQPWNQYSPLKRYE-----PRSLSKDFSQEQLESMNKNYTSIKNTLKQSSGRRWAYYEFFYSNIDRALLLGCNDFEICLKQMFQDLKTRMLTRRQWSNIRRLMGKPRRYSAAFLKEERAILEEKRKKIRYLHQLKGFEVTDMTQFKDLPEEVPTPMVIGTKVTAKVPDYLQKDGLNLFTGSIDAVDNVNNTFRIIFDREGIGSHSIPDTDV-SSEEYESMNLQLFVVKERPKVAESTNQKVDKSDANCSPT--------RLRLKEELRKGSGGTFGGFPVHFLLQLTTLSKAIALKKEYVKKLKEMNSKVELAQPFGY-IKKDFQRDYAFVVLELDKINTEMNDIFDNIQHYIHTDAPHMG--ALDQSLNVRNECNEKAMDLIEQS-----QCILHDEHMLTLTKQFTSLMLQINHVAESEEPCSAKLSLLDSAVEEIKETLHPSNKKLFEDQVEISIAFLKNNLQNEKSSLSAFS 1718
KR RL +D++ N SP KR + P+ + S ++ K ++N LK +W YE+FYSNID+ L G NDF +CLK+ F +LKTR LTR +W IRRLMGKPRR S+AF +EER+ L++KR+KIR L Q K V D++QFKDLP+E+P P+VIGTKVTA++ DG LFTG IDAVD +N T+R+ FDR G+G+H+IPD +V S+E +E+M + F K+RP T ++ + SP + + ++ T GGFPV FL+Q+T LSK + +KKE++KKL+EMN++ E + + I +FQR YA +VLEL+++N ++N + +Q Y + AP G DQ ++R C E+A +++ + Q + +E++ L + T+++LQI +AE + S + L ++ +IK T+ SN F++ VEI +A +++ L ++ +L AF+
Sbjct: 59 KRSRLFSDEDDRQINTRSP-KRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK---VADVSQFKDLPDEIPLPLVIGTKVTARLRGV--HDG--LFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGL-SQMGNLHAFA 535
The following BLAST results are available for this feature:
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