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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046336 ID=TCONS_00046336|Name=TCONS_00046336|organism=Clytia hemisphaerica|type=transcript|length=2456bp AGGAGGCTTGAAATGAATTATTCTCAgggctttattttgaagaacttCGA TTTTATTAAACGAGGCCTGGGTCATGAAACCGATAGTCTGAAGACAATAG TTCACATGAGAATCAAATAAGGCATAGTAGATCGAAAGAAGGgttttaaa atcaacaaaatgtcTAAGTTTTGACAGAAAGCCTACAGTTCGGGATAATT TAGCGGTTAAATCGTGGACTTGGGGTTCCCAAGAGAGATGTTCATCCAGA ATAATTCCAAGATACTTAGCCTTCTTAGAGAGATGAAGTTTTTGGCCACT AAGTCTGAAGTTCAGGTTTTTTGTAAATGATTTTCTGATGCTTCTAAAGA GAATAAGTTCAGTTTTGGAGGTGTTCAAGCTGATCTTGTTAGCTCTGAGC CAGTGGCAAGGAGAGCTTGCCCCTATTTACTCTcctatttaattttttaa ttgatttatcacaaaaggaatactagtgtcatcagcaaaatgaaATGTAG TGGAATTTTCTAGCGCACGTTGGAGGTCATTTATGTAAATGATAAATAAG AGGGGGCCAAGCACAGAACCTTGAGGGACTCCATGTTTAATAGGTATATA ATTTGAATTGCTATTTCTGATTTCAACACGATGAGTTCTGTCTGAAAGGT ACGATCTAAAAGTTTAAGGGCAGGTCCTTTTATNAAGCACAGAACCTTGA GGGACTCCATGTTTAATAGGTATATAATTTGAATTGCTATTTCTGATTTC AACACAATGAGTTCTGTCTGAAAGGTACGATCTAAAAAGTTCAAGGGCAG GTCCTCTTATGCCATAGTACTCTAATTTGTGTAGAAGGATGCCATGTTCT ACCgtatcaaaagcttttttcaagtcaataaaAACTCCAGCAGCAAACTC ACCACCATCTAGAGCTTTTCTTACAAACTCAGTGAGAGCTATCACAGCAT GGTTAGTGCTGTGTCCTTTTCTAAAACCAAATTGTTTGTTTGTAAAAGTG GTATTTTTGtcaaagaatttgataagaCGAAGGTGTAaaagtttttcgaa gattttgtTAATATTGGAAAGCAGGGAAATCGGTCTATAATTTCCTACCT CAAGTTTGGAATCTTTTTTGTGCAAAGGTTTTATTGTAGCTCTTTTCAGA CATTCTGGGTGCCTTCACGAATAGAGCAGTTAAAAATATGAGAGAGGATG GTGCTTGCTGTtggagaaatcattttcaagaATGTTGTGGGGATACTGGA GGGCCCTGAAGCTTTTTGGTAGTCTAGTTTATTGATGAGTTTGAGTACTT CTGTAGGCGTTACTCTGGTTAAAAATATAGAGTTTAGGGTAGGATCATTA AGATAGTCTGTGAATGCCTTGTCAGTTttaggaattttattttttgtatc aCCTGCTATTTTTCCTTAGTAATTGTTAAAAGCATCTGCTATGTCTTTAT CTCTTGTAACCTGAGTGTTGTTGTGTATAATGAATTTTGGAGAGAGGTCA GAACTCGACTTGATACCAGTTATATCGTTCACCACCttccatttttgttt taaattatttttgttttcagagAAGTAATTTTTGTAATAATTATTCTTGC TAATTCTTATGAGCTTGGAAAGAAAGTTTCTATGTTTTTTGAATTTGGca tgtttttgagatttttgttcaGGGTTTTTAGcctttagaaattttttgta caagagattttttgttgaaattgatttgaTCAGTCCATTCGTTATCCAGG GATTTTTTGGCTGGCAAACTTTTTTCCATGAAGACTTAATGGGAGCATGG TAGTCTATTATGGTGTTAACCTCCGATATAAATGTGTGTAATTTCTCTGA GTTATACTTACCTTCAAATATTTTAGGCCACTCTAGAGTGAGGAAGTCCA TTACAAACTCATCTTTGACGAACTTTCTCATATCCCTcttaataatttta attttaggtATAGTTTTTGGTTTGAGGCTAAGTTTCATAATTTGTGGAAG ATGATCAGATATGTTGCAAATAAGGTTAGAGGATGATATTTCTTTATTTA TAAAATTTGTAAAAATGTTGTCAATAAGGGTTTTAGAAGTTGGAGTGATT CTTGTAGGCCTGGTGATTGTTGGTAACATGCAATGAGAAAGGTTACAGCT GAGAAAATTGTCAGCCTTTGTGTTCGATTCAACAGTTAATAGGTCCAGGT TGAAATCTCCAAAAAtgatagcttttttattttcagcgaGAATTTTGTCA AGTAAGTCTGAGTAAAGGCTGAGGAAATTTCAGCCAGAGGGTGCTTGTAG ATGCATActattatgaaatttttgtcgTATACAACTTCTCTTACAACAGA CTCAATTTGGTTAGTTTTATAAATgcaagagcagccgccggcagattttt tttaaatatctgttctttttttccaggagagTAAATTTTATGGGTAAATC TAGGAG Run BLAST on NCBI transcript from alignment at scaffold_108:516518..518973 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046336 ID=TCONS_00046336|Name=TCONS_00046336|organism=Clytia hemisphaerica|type=transcript|length=2456bp|location=Sequence derived from alignment at scaffold_108:516518..518973 (Clytia hemisphaerica) CTCCTAGATTTACCCATAAAATTTActctcctggaaaaaaagaacagata
tttaaaaaaaatctgccggcggctgctcttgcATTTATAAAACTAACCAA
ATTGAGTCTGTTGTAAGAGAAGTTGTATAcgacaaaaatttcataatagT
ATGCATCTACAAGCACCCTCTGGCTGAAATTTCCTCAGCCTTTACTCAGA
CTTACTTGACAAAATTCtcgctgaaaataaaaaagctatcaTTTTTGGAG
ATTTCAACCTGGACCTATTAACTGTTGAATCGAACACAAAGGCTGACAAT
TTTCTCAGCTGTAACCTTTCTCATTGCATGTTACCAACAATCACCAGGCC
TACAAGAATCACTCCAACTTCTAAAACCCTTATTGACAACATTTTTACAA
ATTTTATAAATAAAGAAATATCATCCTCTAACCTTATTTGCAACATATCT
GATCATCTTCCACAAATTATGAAACTTAGCCTCAAACCAAAAACTATacc
taaaattaaaattattaagAGGGATATGAGAAAGTTCGTCAAAGATGAGT
TTGTAATGGACTTCCTCACTCTAGAGTGGCCTAAAATATTTGAAGGTAAG
TATAACTCAGAGAAATTACACACATTTATATCGGAGGTTAACACCATAAT
AGACTACCATGCTCCCATTAAGTCTTCATGGAAAAAAGTTTGCCAGCCAA
AAAATCCCTGGATAACGAATGGACTGAtcaaatcaatttcaacaaaaaat
ctcttgtacaaaaaatttctaaaggCTAAAAACCCtgaacaaaaatctca
aaaacatgCCAAATTCAAAAAACATAGAAACTTTCTTTCCAAGCTCATAA
GAATTAGCAAGAATAATTATTACAAAAATTACTTctctgaaaacaaaaat
aatttaaaacaaaaatggaaGGTGGTGAACGATATAACTGGTATCAAGTC
GAGTTCTGACCTCTCTCCAAAATTCATTATACACAACAACACTCAGGTTA
CAAGAGATAAAGACATAGCAGATGCTTTTAACAATTACTAAGGAAAAATA
GCAGGtgatacaaaaaataaaattcctaaAACTGACAAGGCATTCACAGA
CTATCTTAATGATCCTACCCTAAACTCTATATTTTTAACCAGAGTAACGC
CTACAGAAGTACTCAAACTCATCAATAAACTAGACTACCAAAAAGCTTCA
GGGCCCTCCAGTATCCCCACAACATtcttgaaaatgatttctccaACAGC
AAGCACCATCCTCTCTCATATTTTTAACTGCTCTATTCGTGAAGGCACCC
AGAATGTCTGAAAAGAGCTACAATAAAACCTTTGCACAAAAAAGATTCCA
AACTTGAGGTAGGAAATTATAGACCGATTTCCCTGCTTTCCAATATTAac
aaaatcttcgaaaaactttTACACCTTCGtcttatcaaattctttgaCAA
AAATACCACTTTTACAAACAAACAATTTGGTTTTAGAAAAGGACACAGCA
CTAACCATGCTGTGATAGCTCTCACTGAGTTTGTAAGAAAAGCTCTAGAT
GGTGGTGAGTTTGCTGCTGGAGTTtttattgacttgaaaaaagcttttga
tacGGTAGAACATGGCATCCTTCTACACAAATTAGAGTACTATGGCATAA
GAGGACCTGCCCTTGAACTTTTTAGATCGTACCTTTCAGACAGAACTCAT
TGTGTTGAAATCAGAAATAGCAATTCAAATTATATACCTATTAAACATGG
AGTCCCTCAAGGTTCTGTGCTTNATAAAAGGACCTGCCCTTAAACTTTTA
GATCGTACCTTTCAGACAGAACTCATCGTGTTGAAATCAGAAATAGCAAT
TCAAATTATATACCTATTAAACATGGAGTCCCTCAAGGTTCTGTGCTTGG
CCCCCTCTTATTTATCATTTACATAAATGACCTCCAACGTGCGCTAGAAA
ATTCCACTACATttcattttgctgatgacactagtattccttttgtgata
aatcaattaaaaaattaaataggAGAGTAAATAGGGGCAAGCTCTCCTTG
CCACTGGCTCAGAGCTAACAAGATCAGCTTGAACACCTCCAAAACTGAAC
TTATTCTCTTTAGAAGCATCAGAAAATCATTTACAAAAAACCTGAACTTC
AGACTTAGTGGCCAAAAACTTCATCTCTCTAAGAAGGCTAAGTATCTTGG
AATTATTCTGGATGAACATCTCTCTTGGGAACCCCAAGTCCACGATTTAA
CCGCTAAATTATCCCGAACTGTAGGCTTTCTGTCAAAACTTAgacatttt
gttgattttaaaacCCTTCTTTCGATCTACTATGCCTTATTTGATTCTCA
TGTGAACTATTGTCTTCAGACTATCGGTTTCATGACCCAGGCCTCGTTTA
ATAAAATCGaagttcttcaaaataaagcccTGAGAATAATTCATTTCAAG
CCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046336-exon-scaffold_108-1491911889:516518..518973 | TCONS_00046336-exon-scaffold_108-1491911889:516518..518973 | Clytia hemisphaerica | exon |
TCONS_00046336-exon-scaffold_108-1510915933:516518..518973 | TCONS_00046336-exon-scaffold_108-1510915933:516518..518973 | Clytia hemisphaerica | exon |
TCONS_00046336-exon-scaffold_108-1575043694:516518..518973 | TCONS_00046336-exon-scaffold_108-1575043694:516518..518973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_108 | supercontig | scaffold_108:516518..518973 . |
Blast
The following BLAST results are available for this feature:
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