TCONS_00046275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046275
Unique NameTCONS_00046275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046275 ID=TCONS_00046275|Name=TCONS_00046275|organism=Clytia hemisphaerica|type=transcript|length=1862bp
TGTacaaacattttctggaagagcctatCATTGCATTTTACTCACTTGTT
CATGggttcaacattttcaaaatgacgACAGGTAACTTTTATGGAGCCAT
CGATTTTATTTGACATTTCCTTTATTGAACGGGCTAAAATCGATGGCTCT
AAGGTAATTGgtattaaattattttctctCTGTTAACCAGCTTTATTATC
AGTAATCTTTCAGTGTTTCTGCGATTCGATCATGATGAAATTTTAGGTTA
TACCAGTATATATTCTGCCATCATATTCAAGCAGTGTGAATGAGTCCAAA
TATTATGATGATTTGGCTCGAGTCTGGAATCCCGCACAAGCTATCATGGC
AGGTTCAATGAATTCCATCACAGCCAACCCAGCGGACATCATCACTGGCC
CGTTAGAGAAACATTTCCCTGTTTCTGCGGGTAATGACCATCGTGAAAAG
GAGAACGCGAAGGGAGAAGAAGCTGACCTTCCTGTCTATGAAGAAGTTGA
CGAAGGACCCACAAAGCCAATCAACGTAAGCGCTGTAATCGGGCGGCGTA
TGGGCGCCCAACAACGTTTGAACGCTAATCCGAACGATCAGTTAGCGCGT
TCGGTTTTAGAAGAATGTGATTTGAAACTTAAAGGATGGACTGAGAAGAA
TCGAAAACCGGGCAAATTTACCGGTGAACGAGGCGTGCTGATGAACAAGA
AAGAGATTGCAGGTGCCGTAGAAACCTGGGTCCGAAAGGATTTCTTTCAC
AATTTGATGCCAGTATGTGGAGGTGTTGGTATGCGAATGTTGAAAAATAT
GGGTTGGAAACAAGGAACTGCTCTTGGCAAAAATCGCGAAGGATATGTGG
CACCGGTTACTTTTGACGTCAAAGTTGGTCGCAGTGGATTAGCTTCTCAA
GAGGAACAACCTCAAAGAGGGCGTGGCTTGTATGGAAATAACTCCTTCCA
ACGAAGCAATTTACCGAAGAAAAAACTTGCACCTGTCAATAATATAGGAG
gcaAACACCCGGTATCGGTATTAGCAGAGAATTGTTCTAAAAGAAAGATG
GGGATGCCAGAATACGAATGTGTGTTCGAAGGTGGTTCATCACACAATAA
GACTTTCCTCATCAAATGCACCATACAGAATGTAGACTATCAACCTTCAG
TTGCATCTCCAAACAAAAAACACGCCAAAGCTCAGGCTGCAATGACTGCT
CTTAAAATCCTGGGTTTTGATCAATGATAGGCTTTCTACCACATAATTGT
CGCGAAGAATTGATACACACCTTAAAGCTTAAACTGTTATAAATGCTTTC
AATACACTCGATGTTTGTCAATTAAAGCTTTACCACTAGTCCTCGTGAAG
AATTGACGTACGGGACCAATTTATACAAATACattggagtctccataact
cgaatgtttccttaactcgaatgtGTTCTCTACTTTTCTTCAGTTAAAAA
TGCATTACCCCATATCTCAAAGTTTCTTAAATGCGAACAAATTTCTGTTC
CCCGTAAGATTTCAAGTTATGGAGGCTCCATTGTAAATGCAATATTGCAC
AATAGGGTTGTATGGGAATCGAACAAAAATGGAAACTATTTTCACATAAA
GCTTGCTGGGGACCCTACCATTCGAGAAAAATTATAATCGACTGTGTGTC
GTTGGATTTTCATAAACACAAAGCGACTTGGGTTGATATTCCTCGAGAAA
TTGTTCTTTCTTGTACTTGCTTTCAAGGATTTTCTAATTGTTATTCCGTA
ATTCTATTCTATGGTGTATaatttatattttgaatttgtcaatgcaagtt
tttatttttatttctgtacagaatttttatatgaaaagaaagaaattttt
gcaaCAGATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_108:272757..282638-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046275 ID=TCONS_00046275|Name=TCONS_00046275|organism=Clytia hemisphaerica|type=transcript|length=9882bp|location=Sequence derived from alignment at scaffold_108:272757..282638- (Clytia hemisphaerica)
TGTACAAACATTTTCTGGAAGAGCCTATCATTGCATTTTACTCACTTGTT
CATGGGTTCAACATTTTCAAAATGACGACAGGTAACTTTTATGGAGCCAT
CGATTTTATTTGACATTTCCTTTATTGAACGGGCTAAAATCGATGGCTCT
AAGGTAATTGGTATTAAATTATTTTCTCTCTGTTAACCAGCTTTATTATC
AGTAATCTTTCAGTGTTTCTGCGATTCGATCATGATGAAATTTTAGGTTA
TACCAGTATATATTCTGCCATCATATTCAAGCAGTGTGAATGAGTCCAAA
TATTATGATGATTTGGCTCGAGTCTGGGTTAGTTGAAGCCTGCGTATTTC
TTTAGATAATACTACAGTTGAGCCTCTCTATTTCGATTTGAAAGGGAAAT
TTAATTTTCATCGAATAAGGAAGTGTATTGAATAGTAGAACGTCGTTTAT
GAGAGTTTCTTGTTTGCAGTGACTTACAATATTATCGAATAATGGAGCGT
ATCGAATGGGAGAACGTCGAATTATAGAGCTTCAACTGTACTTTTCTCAT
TCTTAACTTTACCGTTTTAATTTATATTTTAGAATCCCGCACAAGCTATC
ATGGCAGGTTCAATGAATTCCATCACAGCCAACCCAGCGGACATCATCAC
TGGCCCGTTAGAGAAACATTTCCCTGTTTCTGCGGGTAATGACCATCGTG
AAAAGGAGAACGCGAAGGGAGAAGAAGCTGACCTTCCTGTCTATGAAGAA
GTTGACGAAGGACCCACAAAGGTAAGTGAAACAATCAGAAATCAATTGCT
GCTTGGAAACTGTCTTTGTGATCCTTGAAGGCTTATTATAATAGTGGGGT
CGTTTAGCATAATTTACGGGGAAAAAAATAAGATCTAGCTGAAACTTTCT
CTATAGGATGGTTATGCCTCAAGAAAAAATTCCCTAAAATCCCACTGGTG
GAACATCCTTTTTTTGGGACATTTCTTTTTTCCCCAGGCAAAACCCTAAG
GGCGAAATTTTTTTCAAACGTATTTCCAGACAATATCATGTATACCATTC
GAAAGCTCTCGAAAAACTATATAGAAGACTTTTAAACGGGTATAGCCGAT
TTCATTACCTACTAACTCAAGATAATTCACGCAGAAGATGCTATTTATGG
TCAATTTTAGACCAAAAATGTTTTTTTCCTACAAACAGCCTGTATTTTTG
TAACACGACCACACTATAAGGCTCAACGCCCAATTTGTCACTAAATTTTT
GATCAAATCTTTTTAATGGGGAGCAGAGCAGCTGAGAGTTTGTTGTCTAT
TCCTTGACTTCGGCCTCTACTGACAAGGCTGATTTCCCTTAAATCAGAGT
TCTTTGAAAGAGGTTTCGATTATGATATCATTTGGTATCCAGTCTATTTG
GTATACTTTGGTATACAATCTACGTACTTTCTAGTTTCGAATCCGAACCG
AGGCTTACTTTACAAAGTTTTTGAAAAGTGATTTCCTTGCTGTTCCTTTT
TCCAGCCAATCAACGTAAGCGCTGTAATCGGGCGGCGTATGGGCGCCCAA
CAACGTTTGAACGCTAATCCGAACGATCAGTTAGCGCGTTCGGTTTTAGA
AGAATGTGATTTGAAACTTAAAGGATGGACTGAGAAGAATCGAAAACCGG
GCAAATTTACCGGTGAACGAGGCGTGCTGATGAACAAGAAAGAGATTGCA
GGTGCCGTAGAAACCTGGGTCCGAAAGGTAATTGAATACGTTTTGTTATA
TGTCATTTTTTATAAGTGGACTCTCGTTATAGATCATGATATTCATTATG
TCATGTTTTAGAAACAATCCCGGTTTTTGCCAGTAGTGGCAAATTTAAAC
TATAGAAAAGTTGTTGCCACTACTGGTAAAAAACGGGGTGTTTCCGTAAA
AAACATTATTACGTCACGAATATTATGAAAACTTTTTCTGTGCTTTTGAT
TCTTTTGTACAATTTATACTAATTGTCATTACCGGCAAGAAAATACCTTA
TCAAATACTTTCTACCATTCAAATCTCTCTGTAACTCAAATAAATTAAAT
TTTCTGTTCGAGTTTGAATTAGTATTTCAGAAAGTCGTCGTATGTTATCT
TAACTTATTCTGCTCTTGTAACCATCATATGGGCCCCCCCCAGCGGTTTG
CGTGATTGCGTGAATGGGCATTTTTGGTTGCGTGAATGCGTGAAAATTGA
AAAAAAATGCGTGAATGCGTGAATTAAAAAAACTTGCGTGAACGTGAAAA
TGTACTTTTCGATTGCGTGAATGCGTGAATCTTGGCTATTTTGTGCGTGA
ATACGTGAATTTTCCCTTTTTTCCACCAATTATGTGCAGTTTTCCCAATT
TTCCAATGTTTCCCCAATTTTTCACAAAATACTTTCCGATTTCTGAAAAA
TCGGGTTATTGCGTGAAACTCGAGGAAAATTTGCGTGAATGCGTGAATTT
CGAATAAAAATTGCGTGATTGCGTGAATTGAGGGTCCGCTGGGGGGGCCT
CATCATACTTTGATAGAATCATGTAGGTTTAGGAAATGTATGTTTTTTGC
TAGAATATTCGCTACAAAATTTAACCAAAATTTACTTTGAACAGGATTTC
TTTCACAATTTGATGCCAGTATGTGGAGGTGTTGGTATGCGAATGTTGAA
AAATATGGGTTGGAAACAAGGAACTGCTCTTGGCAAAAATCGCGAAGGTA
TTTTTCTTATGCATTTATTGTGCTGTCTACTGTACCTACTGGGTTACCCA
CCTACCTACCAGACCTACCAGTTTTTCAACATAAATTTTGATTTGACTAC
CCTATTTGACTTTCTGCCTCAATTCTTTCTCAAAAATCCTTCCTATCTTT
TGTAACTCAAGGTGTTTTCCGTGCCAATGAGTGAATGGCTATACAAAGTT
AGTCGCGAACGGTTATGTATTCAGTGGCGAGCAGCCTTATCTAGTGTGCC
GGGCAACTCTAGATGGACTTCATTGACCCGTGCATATTCCACATGGCCCT
GGCAGCCAATTATGAAAACTAAATTATTTAAAAATATTCGTATTGGTTCC
CTGAATGTTGGAACCATGAGAGGTAGAGCTGGTGAAATTATCGAGACTGT
GTCACGCCGTAGGGTTTCAGTCTGCGCTATTCAAGAATCACGATGGAAAG
GCCAATCAGCTAGAATGATAAGCGGTAAAAACTGCAAATATAAGTTCCTT
TGGTGTGGTGATGAAACTGGTTTTGGTGATGTGGGTCATCTCGTGGAGGA
GGACCTTGTTGAGAATGTGATATCTGTCGAACGCATAAACAGCAGAATCA
TGTACATTCGCATCATGATCGAAAAATCCATTATCCGTATCTTTAGTGTT
TATGCGCCTCAAACTGGTCTACCTGAGTTACAAAAAGAAAAGTTTTACAA
CGATCTTCTTACTCAGACAGCCCTAACACCGGAAGAGGAATTTCTTCTAA
TCTGCGGTGATCTTAATGGTCATGTGGGTAAAGAAACAGCAGGTTTCGAC
AATGTTCACGGTGGAAATGGTTTTGGTGACAGAAATGCTGACGGTATCAG
ACTTCTTGACTTCTGTTTAGCTGCTAATCTTGCTATCACTAACACATTCT
TTTCTAAATCAGACAATAAATTGGTCACCTACCAGTCTGGTGCCACAAAG
TCACAAATCGACTTCATCTTAATTCCGAGAAATCACCTAAAAACAGTCCG
CAATGTAACTGTAATTAATGGTGAAGAATGCACTCCACAACATAAGTTGA
TTGTTGGTGACATTATTCTGAATGCAGGTAAGGTGACTCTCAAAGCCTTT
CCCAGACGCAGACGCGTATGGAAACTAAAAGAGCCTGCTATATGTGAGGA
TTTCTGTGCAAGTGTTAATGCGAAATTGCAAAATGCTGTTGCTTCTAATG
ATATTGATGAATCCTGGAAAAATTTGAAAAACTCTATTCTTGAATCCTTT
GATACTTCCTGCGGTTGGTCAAAACCACATCAAAGACGCAGGGAAACTTG
GTGGTGGAATGAAAGGGTTGATACTGCTGTTAAGGAGAAAAGAAGACTTT
GGAAGATCTGGAAACGTGGTGGTCAGAAAGAGCCATATCTGGCTGCTAAA
CGCAGGGCAAAATCTGAAGTTTACCAGGCTAAAAAAGATGCTTCAGTTGA
AAGGTTTCGTAATTTGAATGAGAAAGATAAGCTTAACCATGTCTTCCAGC
TTGCTAGAAAAATGAAGTCTGAGAATCAAGACATTGTTGGTGAAAAGTGT
ATTCGTAACAAAGAAGGGGATATTGTATATGATGATGCTTCAAAGTTAGA
GGCCTGGAAACAACATTATGATGGTCTCCTGAACTCTGAATTTGCCTGGG
ATGAATCTGCTCTTCCAAACGCAGATCCCATTATGGGTCCCTCAATTGAG
ATAACTGAGGCAATGGTACTCAAAGCCATTAATCAGATGAAATCTGGCAA
ATCCGCTGGGCCAAGTGGCATAGTTTCTGAAATGCTTAAGGTCTCGCGCG
ATAGTGTTGTCCCGAAACTCACAACCCTTATAAATTTGATTATTCGAGAA
GGTAAGGTACCTGATGAATGGAACGAATCGTACATCATTAGTTCGTATAA
GGGAAAAGGTGACTCCCTTGATTGTGGTAATTATCGCGGTCTCAAGTTGT
TAGAAGTACTGCAGAAGGTACTGGAGCGCATCTTGGAAAGTCAGGTCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAATCTTAATCGACTCCATGCAGTTTGGTTTTAT
GCCTGGTCGTGGAACAACAGATGCCATATTCATCTTACGACAACTTCAAG
AAAAATATCTTGGAAAAAGAAGGACATATTTTTTGCCTTTGTTGACCTTG
AAAAAGCCTTCGACCGTATACCACGGAAAGTGCTGTGGTGGGCCATGCGA
ACTCTTGGTGTTTCCGAATGGATTGTAAAAACGGTTCAGGCTATGTACAA
TTCTCCAAGATCTCGTGTTCGCATCAATGGTAAATTCAGCGACGAGTTTG
ATGTAAACGTTGGTGTGCATCAAGGCTCAGTCCTGAGTCCTTTGCTATTT
ATAATTGTCATGGAAGCTCTCTCTCGGTCATTTCGTACCGGTTGTCCTTG
GGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGTAAAAACTACAT
TCATAAACGATGCTCGGGCATAAAAGGGCGTTTAAGGGAAGATTTTAACT
ATGTTTGTCCTGCTTGTCTAAATCCTGTTGTTGTACCTCCCTCCCCTGTG
TTTTCCATAGACGGTTCAGATCTTGAGGTAGTACCCACATTCTGCTACCT
AGGTGATATGATTGGGGACAATGGAGGCTGTTTTGATGCAATTACCTCAA
GGGTGAAGTCTGCTTGGAGAAAGACTTGGTATTCCATGTATTAAAGACTT
AGTTTCCCAAGGTAGACTTCGTTGGTTCGGTCATGTGCAGCGTATGCACG
ACGACTGTTGGCAAAAAAAGATGCTCACTCATGTAGTGCAAGGGAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA
TCGCATTGCATGGCGTACGGCCATCAAGAGAGGAAGGCGTCCAACCCCAG
CTGCTGGGAACAATGGACGATAAACCGTGCAGTAAGTAAGTAAGTAAGTA
CCCAAGGCTATAGAAAGTGACAATTTAAGATTTTCGACTCATTTCGGATG
ACGGATTGAATCTAGTCATTTTTAAGTTTGTTTTTTTTTTGCCTGGTACA
CAATTTTCGAAATCAAGCGGAAAATGTGTAAATATATAACTATGTAGGAA
ATTAGTGGCTTTGAATCCTACATAGGAGATTCACTTTGTATACTCCTTGG
CTTTTCAGTTGACTCTTTTTAATTCGATGTTCAAAAGACCAAAAATATTA
TTCGAATTAGGGAAAGATTCTAATTACAGCGAGTAGTTTTAACGGCTTTC
CAGCTGAGGGAACCAATATTTTAGAATCAAAAAGAGATTGGAATAATAGA
GGTTCCTGTTAGAAAGAATTTAGTGTACCTCATCAGTTGGTTTGATCATT
TTTTAAACTGCTCTACCCGTTTACACACTCTTCAGGATATGTGGCACCGG
TTACTTTTGACGTCAAAGTTGGTCGCAGTGGATTAGCTTCTCAAGAGGAA
CAACCTCAAAGAGGGCGTGGCTTGTATGGAAATAACTCCTTTCAACGGAG
CAATTTACCGAAGAAAAAACTTGCACCTGTCAATAATATAGGAGGTAATA
ATTTATGAAATGTTATTTAATTCCATTATCAGTTATATGAAAATGCGATA
GCTAGAATGCAGAAACAGAACCTAGCACATCGTGTACCCAAAACAGATAA
TTCCGATAACTTTTTTTCTCAATGGGGATAAAAATTCCTATTGAAATCTC
AATGGGGATATAAATTTTATTGTTATTGTTTCAAGGTTAAACAATCCAGG
CAGGATGGTTTTGAAATTTATTTTATTTTTTTTTTATTTTTTTAGGCAAA
CACCCGGTATCGGTATTAGCAGAGAATTGTTCTAAAAGAAAGATGGGGAT
GCCAGAATACGAATGTGTGTTCGAAGGTGGTTCATCACACAATAAGACTT
TCCTCATCAAATGCACCATACAAAATGTAGACTATCAACCTTCAGTCGCA
TCTCCAAACAAAAAACACGCCAAAGCTCAGGCTGCAATGACTGCTCTTAA
AATCCTGGGTTTTGATCAATAATAGGCTTTCTACCACATAATTGTCGCGA
AGAATTGATACACACCTTAAAGCTTAAACTGTTATAAATGCTTTCAATAC
ACTCGATGTTTGTCAATTAAAGGCTTATGTAGCCCACACTAGAGAAGAAA
CACATTCCAAAATACAGATACAGTGGAGTCTCTATAATTCGAACCTCTAT
AACTCGAATGTTTATAACTCGAATGTTTATAACTCGAATGTTTCCTTAAC
TCGAATGTGTTCTCTACTTTTCTTCAGTTAACAACGCCTTACCCCATATC
TCAAAGTTTCTTAAACGCGAACAAAAATCTGATCCCCGTAAGATTTCAAG
TTATGAAGGCCTCATTGTCAATGCAATATTGCACAATAGTGTTGTATGGG
AATCGAACTAAAATGGAAACTATTTTCACATTAAGCTTGCTGGGAACCCT
ACCATTCAAGAAAAATTATAATCGACTGTGTGTCGTTGGATTTTCATAAA
CACAAAGCGACTTTGGTTGATATTCCTCGAGAAATTGTTCTTTCTTGTAC
TTCAAGGATTTTCTAATTGTTATTCCGTAATTCTATTCTATGGTGTATAA
TTTATATTTTGAATTTGTCAATGCAAGTTTTTATTTTTATTTCTGTACAG
AATTTTTATATGAAAAGAAAGAAATTTTTGCAACAGATTTTTACTGATGA
GTTGAAAATGCTCATGAGTAAAAATTACTCGATGCAAAAGATTATGTGAT
AATAATTGAAAAATTAAATTATGATGTGCTGTTCTTGTTCAATTTCATCT
TTAAAGAAACTGATTGCATTTATAGAACTAAGAAAAACTTCAACGGAATA
TGAAAAGTCGATGTTTCGGGAATCCTATATTCACGCCCCCTAATATTCAG
ATAAAAACTACCCATACCTCTTCAATCCTGATACCATTTTACTTTTTGTT
ACATATTTTCTTTTTACTCTTAGGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCATAACTATGTAGGAAATTAGTGGCTTTGAATCCTACATAG
GAGATTCACTTTGTATACTCCTTGGCTTTTCAGTTGACTCTTTTTAATTC
GATGTTCAAAAGACCAAAAATATTATTCGAATTAGGGAAAGATTCTAATT
ACAGCGAGTAGTTTTAACGGCTTTCCAGCTGAGGGAACCAATATTTTAGA
ATAAAAAAGAGATTGGAATAATAGAGGTTCCTGTTAGAAAGAATTTAGTG
TACCTCATCAGTTGGTTTGATCATTTTTTAAACTGCTCTACTCCTTTACA
CATTCTTCAGGATATGTGGCACCGGTTACTTTTGACGTCAAAGTTGGTCG
CAGTGGATTAGCTTCTCAAGAGGAACAACCTCAAAGAGGGCGTGGCTTGT
ATGGAAATAACTCCTTCCAACGAAGCAATTTACCGAAGAAAAAACTTGCA
CCTGTCAATAATATAGGAGGTAATAATTTATGAAATGTTATTTAATTCCA
TTATCAGTTATATGAAAATGCGATAGCTAGAATGCAGAAACAGAACCTAG
CACATCGTGTACCCAAAACAGATAATTCCGATAACTTTTTTTCTCAATGG
GGATAAAAATTCCTATTGAAATCTCAATGGGGATATAAATTTTATTGTTA
TTGTTTCAAGGTTAAACAATCCAGGCAGGATGGTTTTGAAATTTATTTTA
TTTTTTTTTTATTTTTTTAGGCAAACACCCGGTATCGGTATTAGCAGAGA
ATTGTTCTAAAAGAAAGATGGGGATGCCAGAATACGAATGTGTGTTCGAA
GGTGGTTCATCACACAATAAGACTTTCCTCATCAAATGCACCATACAGAA
TGTAGACTATCAACCTTCAGTTGCATCTCCAAACAAAAAACACGCCAAAG
CTCAGGCTGCAATGACTGCTCTTAAAATCCTGGGTTTTGATCAATGATAG
GCTTTCTACCACATAATTGTCGCGAAGAATTGATACACACCTTAAAGCTT
AAACTGTTATAAATGCTTTCAATACACTCGATGTTTGTCAATTAAAGCTT
TACCACTAGTCCTCGTGAAGAATTGACGTACGGGACCAATTTATACAAAT
ACATTGGAGTCTCCATAACTCGAATGTTTCCTTAACTCGAATGTGTTCTC
TACTTTTCTTCAGTTAAAAATGCATTACCCCATATCTCAAAGTTTCTTAA
ATGCGAACAAATTTCTGTTCCCCGTAAGATTTCAAGTTATGGAGGCTCCA
TTGTAAATGCAATATTGCACAATAGGGTTGTATGGGAATCGAACAAAAAT
GGAAACTATTTTCACATAAAGCTTGCTGGGGACCCTACCATTCGAGAAAA
ATTATAATCGACTGTGTGTCGTTGGATTTTCATAAACACAAAGCGACTTG
GGTTGATATTCCTCGAGAAATTGTTCTTTCTTGTACTTGCTTTCAAGGAT
TTTCTAATTGTTATTCCGTAATTCTATTCTATGGTGTATAATTTATATTT
TGAATTTGTCAATGCAAGTTTTTATTTTTATTTCTGTACAGAATTTTTAT
ATGAAAAGAAAGAAATTTTTGCAACAGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029552XLOC_029552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046275-exon-scaffold_108-1575043694:282312..282638TCONS_00046275-exon-scaffold_108-1575043694:282312..282638Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1575043694:281868..282056TCONS_00046275-exon-scaffold_108-1575043694:281868..282056Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1575043694:280912..281133TCONS_00046275-exon-scaffold_108-1575043694:280912..281133Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1575043694:279942..280044TCONS_00046275-exon-scaffold_108-1575043694:279942..280044Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1575043694:273870..274028TCONS_00046275-exon-scaffold_108-1575043694:273870..274028Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1575043694:272757..273618TCONS_00046275-exon-scaffold_108-1575043694:272757..273618Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:282312..282638TCONS_00046275-exon-scaffold_108-1510915933:282312..282638Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:281868..282056TCONS_00046275-exon-scaffold_108-1510915933:281868..282056Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:280912..281133TCONS_00046275-exon-scaffold_108-1510915933:280912..281133Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:279942..280044TCONS_00046275-exon-scaffold_108-1510915933:279942..280044Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:273870..274028TCONS_00046275-exon-scaffold_108-1510915933:273870..274028Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1510915933:272757..273618TCONS_00046275-exon-scaffold_108-1510915933:272757..273618Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:282312..282638TCONS_00046275-exon-scaffold_108-1491911889:282312..282638Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:281868..282056TCONS_00046275-exon-scaffold_108-1491911889:281868..282056Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:280912..281133TCONS_00046275-exon-scaffold_108-1491911889:280912..281133Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:279942..280044TCONS_00046275-exon-scaffold_108-1491911889:279942..280044Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:273870..274028TCONS_00046275-exon-scaffold_108-1491911889:273870..274028Clytia hemisphaericaexon
TCONS_00046275-exon-scaffold_108-1491911889:272757..273618TCONS_00046275-exon-scaffold_108-1491911889:272757..273618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:272757..282638 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.03959	0.308208	1.29866	1.02185	1.73721	0.994145	0.000155756	2.11434	1.84491	2.9579	0	0	0	0	0	0	0	0	0	0	2.58326	6.01714	0	0	0	0
Blast
[Close]
BLAST of TCONS_00046275 vs. Swiss-Prot (Human)
Match: SON (Protein SON OS=Homo sapiens GN=SON PE=1 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 2.040e-36
Identity = 85/251 (33.86%), Postives = 133/251 (52.99%), Query Frame = 1 
Query:  403 LEKHFPVSAGNDHREKENAKGEEADLPVYEEVDEG-----------PTKPINVSAVIGRRMGAQQRLNANPNDQLARSVLEECDLKLKGWTEKNRKPGKFTGERGV-LMNKKEIAG-AVETWVRKDFFHNLMPVCGGVGMRMLKNMGWKQGTALGKNREGYVAPVTFDVKVGRSGLASQEEQPQRGRGLYGNNSFQRSNLPKKKLAPVNNIGGKHPVSVLAENCSKRKMGMPEYECVFEGGSSHNKTFLIK 1116
            L K FPVS+G+ HR+KE        +PV +  +E            P++P+++S  +  R  AQ+RL+ N  D  A S+L     ++  W + N  PG+FTG  GV ++ ++++A    + W++KD F    PV GG+G  +++ MGW++G  LGKN+EG   P+  D K  R GL +  E+ Q+  G +               A + ++ GKHPVS L E C+KR+   PE+  V + G  H K FL +
Sbjct: 2171 LTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSNLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFS--------------AAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFR 2407
The following BLAST results are available for this feature:
BLAST of TCONS_00046275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SON2.040e-3633.86Protein SON OS=Homo sapiens GN=SON PE=1 SV=4[more]
back to top