TCONS_00046223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046223
Unique NameTCONS_00046223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046223 ID=TCONS_00046223|Name=TCONS_00046223|organism=Clytia hemisphaerica|type=transcript|length=524bp
CTCTAATGGTAACCCTATTTAATTCCATCGTTTGCCAAAGAATCCTGAAT
TGTgaaaacagtacaaaaaacttttcaaaacagaaGGATCAAAGGATTTG
GAAATTTGGTGTCATATGTTCTGGCCATTGGAGTTTGTTTCAGATCATCT
TCTAATGATTTACCAGATGTTATAGTTCCTGTATCCCAATACAAACTGAT
CAAGAAAATTAAGTATGAACGAGTAAAGAAGTGTTGGGTTTTTTATCTGG
AATTCTAGTTTCACGAACAATGCTATGGAGAAAATGAGCAAGCACTACAT
AATCGAAACCCCAACAACAACCAGGAGGTTGACCATCaggagatttcttt
tgatagttgctcacttagctttgttttggttttggtctTGGCTTTGTTGA
ACACTTTACTGACAGCTCGATGTTTAATAGCAAATAGGATACACGAAGGG
tacaaacacatcaaaggtCATGCTTCAAGGATGAGGTTGCAGAAGATATT
ATTTATGTGCTGGCTTGAAAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_106:324920..325443

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046223 ID=TCONS_00046223|Name=TCONS_00046223|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at scaffold_106:324920..325443 (Clytia hemisphaerica)
TAATTTTCAAGCCAGCACATAAATAATATCTTCTGCAACCTCATCCTTGA
AGCATGacctttgatgtgtttgtaCCCTTCGTGTATCCTATTTGCTATTA
AACATCGAGCTGTCAGTAAAGTGTTCAACAAAGCCAagaccaaaaccaaa
acaaagctaagtgagcaactatcaaaagaaatctcctGATGGTCAACCTC
CTGGTTGTTGTTGGGGTTTCGATTATGTAGTGCTTGCTCATTTTCTCCAT
AGCATTGTTCGTGAAACTAGAATTCCAGATAAAAAACCCAACACTTCTTT
ACTCGTTCATACTTAATTTTCTTGATCAGTTTGTATTGGGATACAGGAAC
TATAACATCTGGTAAATCATTAGAAGATGATCTGAAACAAACTCCAATGG
CCAGAACATATGACACCAAATTTCCAAATCCTTTGATCCttctgttttga
aaagttttttgtactgttttcACAATTCAGGATTCTTTGGCAAACGATGG
AATTAAATAGGGTTACCATTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029522XLOC_029522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046223-exon-scaffold_106-1491911889:324920..325443TCONS_00046223-exon-scaffold_106-1491911889:324920..325443Clytia hemisphaericaexon
TCONS_00046223-exon-scaffold_106-1510915933:324920..325443TCONS_00046223-exon-scaffold_106-1510915933:324920..325443Clytia hemisphaericaexon
TCONS_00046223-exon-scaffold_106-1575043694:324920..325443TCONS_00046223-exon-scaffold_106-1575043694:324920..325443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:324920..325443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.425103	0.506142	7.73658	5.34802	4.47038	4.61094	1.86776	2.73872	1.39005	2.26084	2.54436	4.77741	1.5423	1.39494	0.689506	1.01807	5.58161	6.60148	0	0.615615	0.406858	0.636131	3.66118	4.30358	0.745992	0.988316	1.25061	1.9738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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