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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046220 ID=TCONS_00046220|Name=TCONS_00046220|organism=Clytia hemisphaerica|type=transcript|length=1307bp
TATATGTACAAATTATCTCAAAATACTTTACAAATTTACAATACAGAAGT
TTATTATATTCATTATGTATATCCCAAaaataatattaattttttaagTC
AGTACTTTGAGTATCCGTCGCCTATGGTCGGTTGGTTGACCCTGGCAAGT
ATTCTacatgggtttttattttattttctcattatattgTCCCTCTGGAC
CAGTTTTTGTAAAGCTGACAAAGCTGGGCAAAACTTTCTACTTACTGTTT
CTACTGcaacataattttttaatgtttcttcAATAAGTTATTGGAATTCA
ACTTTGattacatttcttttttcagttacAAAGTCATTGGGAATGAGTCA
CCGATTCCAAAGAAGTCGACCCAGTCTCTGAGCATGTCCTTTtggacttt
ttacaaaaaagttccTTCAATTGTTTCCTCACATCACGACTCAGTGATAC
GTAAATAATTGGGtccaaaatataattcaatGCTAGTAAGTGTATAGAGA
CAGTCAAAAGATCTCGATATTCGCCTTTAACATGTTCTTGACAGATAGCA
GCTAGGAAGGGAGTCCAACATACTACAAACGCAATCACCATCCCAAGGTT
AATCCTCACAATTTTAGATTCTTTTTGAATTTGGCATGTTCTTCGTTTCT
TAGTACTATCGACGTATGTTATTTTACATATCATTTCAATTTGACGATGT
GCTTCAATATAAACAATGATGTTGGATGCTGTCAACACCAAGAAACCTGT
ACCAACAACGATAATGAACAATAGGCTAAACAGATCTGAAAATCCATCTT
TGTCCATCCAATGATGCGCCAGGTACAGGATAACCAGATAAACCACCGCT
GCAAAGTCTTGAAATATAGTTATCTTTACCACAGTCATCGTGTTAAATTT
CGACTGATAATAAAACGGTTTTTTAACGGCAAGCGCGCGGTCGATTGTGA
CTGCTATACGATTTGTAATGGATAAGAGCATGAATGCGGATAAAATGATA
TGGAATTCTTTAGCATTTTTAATACCTTCGACTCTTTCTTTCTTAGAATT
TGGATCAATCATCAAAGCATGGAAAACCAGCATAAGTAAACAAACACCGA
AATCAGCCAAGAAGAGATTTACCAAAAGTTTATTGGATGTTCGTTTCCGT
AACTTTCGAAAGTACACGATGGTTGAGATAGCGGTGAGTGATAGAAGCAT
ACCGATTGTTGATAGACATGTCAATCCAATATTGACGTAAAGCATTCGTT
GTGAACGTGTTCCTGATGACTCTTCTTCTGTCATTTTTGATACCTTTTAT
TGTGCTC Run BLAST on NCBI protein sequence of TCONS_00046220-protein >TCONS_00046220-protein ID=TCONS_00046220-protein|Name=TCONS_00046220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MTEEESSGTRSQRMLYVNIGLTCLSTIGMLLSLTAISTIVYFRKLRKRTS
NKLLVNLFLADFGVCLLMLVFHALMIDPNSKKERVEGIKNAKEFHIILSA
FMLLSITNRIAVTIDRALAVKKPFYYQSKFNTMTVVKITIFQDFAAVVYL
VILYLAHHWMDKDGFSDLFSLLFIIVVGTGFLVLTASNIIVYIEAHRQIE
MICKITYVDSTKKRRTCQIQKESKIVRINLGMVIAFVVCWTPFLAAICQE
HVKGEYRDLLTVSIHLLALNYILDPIIYVSLSRDVRKQLKELFCKKSKRT
CSETGSTSLESVTHSQ Run BLAST on NCBI transcript from alignment at scaffold_106:290931..292237 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046220 ID=TCONS_00046220|Name=TCONS_00046220|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at scaffold_106:290931..292237 (Clytia hemisphaerica)
GAGCACAATAAAAGGTATCAAAAATGACAGAAGAAGAGTCATCAGGAACA
CGTTCACAACGAATGCTTTACGTCAATATTGGATTGACATGTCTATCAAC
AATCGGTATGCTTCTATCACTCACCGCTATCTCAACCATCGTGTACTTTC
GAAAGTTACGGAAACGAACATCCAATAAACTTTTGGTAAATCTCTTCTTG
GCTGATTTCGGTGTTTGTTTACTTATGCTGGTTTTCCATGCTTTGATGAT
TGATCCAAATTCTAAGAAAGAAAGAGTCGAAGGTATTAAAAATGCTAAAG
AATTCCATATCATTTTATCCGCATTCATGCTCTTATCCATTACAAATCGT
ATAGCAGTCACAATCGACCGCGCGCTTGCCGTTAAAAAACCGTTTTATTA
TCAGTCGAAATTTAACACGATGACTGTGGTAAAGATAACTATATTTCAAG
ACTTTGCAGCGGTGGTTTATCTGGTTATCCTGTACCTGGCGCATCATTGG
ATGGACAAAGATGGATTTTCAGATCTGTTTAGCCTATTGTTCATTATCGT
TGTTGGTACAGGTTTCTTGGTGTTGACAGCATCCAACATCATTGTTTATA
TTGAAGCACATCGTCAAATTGAAATGATATGTAAAATAACATACGTCGAT
AGTACTAAGAAACGAAGAACATGCCAAATTCAAAAAGAATCTAAAATTGT
GAGGATTAACCTTGGGATGGTGATTGCGTTTGTAGTATGTTGGACTCCCT
TCCTAGCTGCTATCTGTCAAGAACATGTTAAAGGCGAATATCGAGATCTT
TTGACTGTCTCTATACACTTACTAGCattgaattatattttggaCCCAAT
TATTTACGTATCACTGAGTCGTGATGTGAGGAAACAATTGAAggaacttt
tttgtaaaaagtccaAAAGGACATGCTCAGAGACTGGGTCGACTTCTTTG
GAATCGGTGACTCATTCCCAATGACTTTgtaactgaaaaaagaaatgtaa
tCAAAGTTGAATTCCAATAACTTATTgaagaaacattaaaaaattatgtt
gCAGTAGAAACAGTAAGTAGAAAGTTTTGCCCAGCTTTGTCAGCTTTACA
AAAACTGGTCCAGAGGGAcaatataatgagaaaataaaataaaaacccat
gtAGAATACTTGCCAGGGTCAACCAACCGACCATAGGCGACGGATACTCA
AAGTACTGActtaaaaaattaatattatttTTGGGATATACATAATGAAT
ATAATAAACTTCTGTATTGTAAATTTGTAAAGTATTTTGAGATAATTTGT
ACATATA Coding sequence (CDS) from alignment at scaffold_106:290931..292237 >TCONS_00046220 ID=TCONS_00046220|Name=TCONS_00046220|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_106:290931..292237 (Clytia hemisphaerica)
ATGACAGAAGAAGAGTCATCAGGAACACGTTCACAACGAATGCTTTACGT
CAATATTGGATTGACATGTCTATCAACAATCGGTATGCTTCTATCACTCA
CCGCTATCTCAACCATCGTGTACTTTCGAAAGTTACGGAAACGAACATCC
AATAAACTTTTGGTAAATCTCTTCTTGGCTGATTTCGGTGTTTGTTTACT
TATGCTGGTTTTCCATGCTTTGATGATTGATCCAAATTCTAAGAAAGAAA
GAGTCGAAGGTATTAAAAATGCTAAAGAATTCCATATCATTTTATCCGCA
TTCATGCTCTTATCCATTACAAATCGTATAGCAGTCACAATCGACCGCGC
GCTTGCCGTTAAAAAACCGTTTTATTATCAGTCGAAATTTAACACGATGA
CTGTGGTAAAGATAACTATATTTCAAGACTTTGCAGCGGTGGTTTATCTG
GTTATCCTGTACCTGGCGCATCATTGGATGGACAAAGATGGATTTTCAGA
TCTGTTTAGCCTATTGTTCATTATCGTTGTTGGTACAGGTTTCTTGGTGT
TGACAGCATCCAACATCATTGTTTATATTGAAGCACATCGTCAAATTGAA
ATGATATGTAAAATAACATACGTCGATAGTACTAAGAAACGAAGAACATG
CCAAATTCAAAAAGAATCTAAAATTGTGAGGATTAACCTTGGGATGGTGA
TTGCGTTTGTAGTATGTTGGACTCCCTTCCTAGCTGCTATCTGTCAAGAA
CATGTTAAAGGCGAATATCGAGATCTTTTGACTGTCTCTATACACTTACT
AGCattgaattatattttggaCCCAATTATTTACGTATCACTGAGTCGTG
ATGTGAGGAAACAATTGAAggaacttttttgtaaaaagtccaAAAGGACA
TGCTCAGAGACTGGGTCGACTTCTTTGGAATCGGTGACTCATTCCCAATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046220-exon-scaffold_106-1491911889:290931..292237 | TCONS_00046220-exon-scaffold_106-1491911889:290931..292237 | Clytia hemisphaerica | exon |
| TCONS_00046220-exon-scaffold_106-1510915933:290931..292237 | TCONS_00046220-exon-scaffold_106-1510915933:290931..292237 | Clytia hemisphaerica | exon |
| TCONS_00046220-exon-scaffold_106-1575043694:290931..292237 | TCONS_00046220-exon-scaffold_106-1575043694:290931..292237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:290931..292237 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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