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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046205 ID=TCONS_00046205|Name=TCONS_00046205|organism=Clytia hemisphaerica|type=transcript|length=1111bp
ACAAAAATGATAGAGGTAATAGAGACTTACATTTTATGAATTTGTGTAGA
CACCAAGATTCAGTGTATACATGTGCAGTAGACTCATTTTTGGAAATAGC
ATATACTACGTTTGGCCCATACATTGCTGAAATTGAGACACAGAGCTTAT
TCTTTGATTTGTTAACAAATTGTTTGAAGTCATACAGTATCATTTTGAAT
GCAGACATCACAGACAAtagtgaaaatgaagaaaacttatCTATTATTCG
TCAGCCTGTTTGGGACTTCTTAATTGCAAATTGCACATCTTTTGAAAAAC
GTGATTGCGATGCTGAGTTTTCTCAGATTTTTTCAGGAAGTATTGTTCGT
AATTTTTCAGAGCAAGAGAAAGCTTTATTTGAGACACGTTACAGAATAGA
GGGATCATGCCCTAACTGTGGTGAAGAATTAATTCGTCAATgtagtatat
ttttgaattaCATTTCAGAATTAAACTTAAATCTTTTAGATGACTTTCAT
AATTCATGGCAAAATCTTTTAAACCCAGTTATGATTGATAAATCAATAAT
GTGCAGTGGTTGTGGGAATATTTCTCACGATACATCGCTAGTGTCATTTG
TTGCACCTACAATCTACCTTGTAGAATTTGGAGGTGATTATGATATAGAA
TTTGGACAGAATTTGGTCTTAAATGATCAAAACTATGTGCTGAGAGGTCT
TGTTAGACATAAAGGAGCCCACTTTTCATGTGCTGTATTAGATGATAATG
ATTGGATCTATATTGATGATTTACATGAAAAAACATTTAGTTGCGAAAGC
TTGCGTCAACTTTATGAGATTCAAAAAGATGGATGGTTTTTTTGCATTTA
CATAAAGGAAAACATTTCTGATCAAActaattttgtacattttgagatAG
CTAGCACTTTGAGGAAAAGAAAGATGGGCACAGATGATTTAAAGGACTAT
CCATTAAgaagcaaaagcaaaaaaattgagGAAGATAAAGCTGAGATCGA
TAAAAGATATTATGCAAACAATAAGGAACATATTAATTTGAAAAGGAAGA
ATTATTACAAAAACAACTGTGAGGATAAAAAAATCTATTATGAAAAGACA
AAAGACAAGCG Run BLAST on NCBI protein sequence of TCONS_00046205-protein >TCONS_00046205-protein ID=TCONS_00046205-protein|Name=TCONS_00046205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
KNDRGNRDLHFMNLCRHQDSVYTCAVDSFLEIAYTTFGPYIAEIETQSLF
FDLLTNCLKSYSIILNADITDNSENEENLSIIRQPVWDFLIANCTSFEKR
DCDAEFSQIFSGSIVRNFSEQEKALFETRYRIEGSCPNCGEELIRQCSIF
LNYISELNLNLLDDFHNSWQNLLNPVMIDKSIMCSGCGNISHDTSLVSFV
APTIYLVEFGGDYDIEFGQNLVLNDQNYVLRGLVRHKGAHFSCAVLDDND
WIYIDDLHEKTFSCESLRQLYEIQKDGWFFCIYIKENISDQTNFVHFEIA
STLRKRKMGTDDLKDYPLRSKSKKIEEDKAEIDKRYYANNKEHINLKRKN
YYKNNCEDKKIYYEKTKDK Run BLAST on NCBI transcript from alignment at scaffold_106:12853..13963 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046205 ID=TCONS_00046205|Name=TCONS_00046205|organism=Clytia hemisphaerica|type=transcript|length=1111bp|location=Sequence derived from alignment at scaffold_106:12853..13963 (Clytia hemisphaerica)
CGCTTGTCTTTTGTCTTTTCATAATAGATTTTTTTATCCTCACAGTTGTT
TTTGTAATAATTCTTCCTTTTCAAATTAATATGTTCCTTATTGTTTGCAT
AATATCTTTTATCGATCTCAGCTTTATCTTCctcaatttttttgcttttg
cttcTTAATGGATAGTCCTTTAAATCATCTGTGCCCATCTTTCTTTTCCT
CAAAGTGCTAGCTatctcaaaatgtacaaaattagTTTGATCAGAAATGT
TTTCCTTTATGTAAATGCAAAAAAACCATCCATCTTTTTGAATCTCATAA
AGTTGACGCAAGCTTTCGCAACTAAATGTTTTTTCATGTAAATCATCAAT
ATAGATCCAATCATTATCATCTAATACAGCACATGAAAAGTGGGCTCCTT
TATGTCTAACAAGACCTCTCAGCACATAGTTTTGATCATTTAAGACCAAA
TTCTGTCCAAATTCTATATCATAATCACCTCCAAATTCTACAAGGTAGAT
TGTAGGTGCAACAAATGACACTAGCGATGTATCGTGAGAAATATTCCCAC
AACCACTGCACATTATTGATTTATCAATCATAACTGGGTTTAAAAGATTT
TGCCATGAATTATGAAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAAT
GtaattcaaaaatatactacATTGACGAATTAATTCTTCACCACAGTTAG
GGCATGATCCCTCTATTCTGTAACGTGTCTCAAATAAAGCTTTCTCTTGC
TCTGAAAAATTACGAACAATACTTCCTGAAAAAATCTGAGAAAACTCAGC
ATCGCAATCACGTTTTTCAAAAGATGTGCAATTTGCAATTAAGAAGTCCC
AAACAGGCTGACGAATAATAGataagttttcttcattttcactaTTGTCT
GTGATGTCTGCATTCAAAATGATACTGTATGACTTCAAACAATTTGTTAA
CAAATCAAAGAATAAGCTCTGTGTCTCAATTTCAGCAATGTATGGGCCAA
ACGTAGTATATGCTATTTCCAAAAATGAGTCTACTGCACATGTATACACT
GAATCTTGGTGTCTACACAAATTCATAAAATGTAAGTCTCTATTACCTCT
ATCATTTTTGT Coding sequence (CDS) from alignment at scaffold_106:12853..13963 >TCONS_00046205 ID=TCONS_00046205|Name=TCONS_00046205|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_106:12853..13963 (Clytia hemisphaerica)
CTTGTCTTTTGTCTTTTCATAATAGATTTTTTTATCCTCACAGTTGTTTT
TGTAATAATTCTTCCTTTTCAAATTAATATGTTCCTTATTGTTTGCATAA
TATCTTTTATCGATCTCAGCTTTATCTTCctcaatttttttgcttttgct
tcTTAATGGATAGTCCTTTAAATCATCTGTGCCCATCTTTCTTTTCCTCA
AAGTGCTAGCTatctcaaaatgtacaaaattagTTTGATCAGAAATGTTT
TCCTTTATGTAAATGCAAAAAAACCATCCATCTTTTTGAATCTCATAAAG
TTGACGCAAGCTTTCGCAACTAAATGTTTTTTCATGTAAATCATCAATAT
AGATCCAATCATTATCATCTAATACAGCACATGAAAAGTGGGCTCCTTTA
TGTCTAACAAGACCTCTCAGCACATAGTTTTGATCATTTAAGACCAAATT
CTGTCCAAATTCTATATCATAATCACCTCCAAATTCTACAAGGTAGATTG
TAGGTGCAACAAATGACACTAGCGATGTATCGTGAGAAATATTCCCACAA
CCACTGCACATTATTGATTTATCAATCATAACTGGGTTTAAAAGATTTTG
CCATGAATTATGAAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAATGt
aattcaaaaatatactacATTGACGAATTAATTCTTCACCACAGTTAGGG
CATGATCCCTCTATTCTGTAACGTGTCTCAAATAAAGCTTTCTCTTGCTC
TGAAAAATTACGAACAATACTTCCTGAAAAAATCTGAGAAAACTCAGCAT
CGCAATCACGTTTTTCAAAAGATGTGCAATTTGCAATTAAGAAGTCCCAA
ACAGGCTGACGAATAATAGataagttttcttcattttcactaTTGTCTGT
GATGTCTGCATTCAAAATGATACTGTATGACTTCAAACAATTTGTTAACA
AATCAAAGAATAAGCTCTGTGTCTCAATTTCAGCAATGTATGGGCCAAAC
GTAGTATATGCTATTTCCAAAAATGAGTCTACTGCACATGTATACACTGA
ATCTTGGTGTCTACACAAATTCATAAAATGTAAGTCTCTATTACCTCTAT
CATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046205-exon-scaffold_106-1491911889:12853..13963 | TCONS_00046205-exon-scaffold_106-1491911889:12853..13963 | Clytia hemisphaerica | exon |
| TCONS_00046205-exon-scaffold_106-1510915933:12853..13963 | TCONS_00046205-exon-scaffold_106-1510915933:12853..13963 | Clytia hemisphaerica | exon |
| TCONS_00046205-exon-scaffold_106-1575043694:12853..13963 | TCONS_00046205-exon-scaffold_106-1575043694:12853..13963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:12853..13963 . |
Blast
The following BLAST results are available for this feature:
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