TCONS_00046203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046203
Unique NameTCONS_00046203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046203 ID=TCONS_00046203|Name=TCONS_00046203|organism=Clytia hemisphaerica|type=transcript|length=487bp
CGTTTATTAAATGCTATTTGTTAAACCATTTTCCTTGATGTTCCTGATGC
ATGTATTAATTGAGAGCAGTTTTTATATCGACTACATGATTACTGAAAAG
TACAACGGGTTATGAACAATTTACATAAACCTAAACGTTATAAAGTTTTC
AATTCACAGCAGTTACTTATATTGACTACAAGATTGCTGTATTTCTATCT
ACAACGTATTACGAATAGTTTAGATTCAACAAAACCTAAACGTTATAAAG
TTTGCAATGTTGCTGACTTCAGACTTACACAAAGTTGCTGATACAATGGT
GCTGTTTTTTCCTGATTGTAGGCTGGTGTTCTTGGTcgtttaactgtttt
aaatgcCATACCATACAGTAGTTGGAAATTGAATTGTGTTGAGACGGACT
CGTCTATATACGGACAATATTTTTAAAGCAGGAAGCATATTTTTAGAGTT
TTCATTTTAAACGATGATATTTTTACACGAAAAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_106:6656..7142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046203 ID=TCONS_00046203|Name=TCONS_00046203|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at scaffold_106:6656..7142 (Clytia hemisphaerica)
GTATTTTTCGTGTAAAAATATCATCGTTTAAAATGAAAACTCTAAAAATA
TGCTTCCTGCTTTAAAAATATTGTCCGTATATAGACGAGTCCGTCTCAAC
ACAATTCAATTTCCAACTACTGTATGGTATGgcatttaaaacagttaaac
gACCAAGAACACCAGCCTACAATCAGGAAAAAACAGCACCATTGTATCAG
CAACTTTGTGTAAGTCTGAAGTCAGCAACATTGCAAACTTTATAACGTTT
AGGTTTTGTTGAATCTAAACTATTCGTAATACGTTGTAGATAGAAATACA
GCAATCTTGTAGTCAATATAAGTAACTGCTGTGAATTGAAAACTTTATAA
CGTTTAGGTTTATGTAAATTGTTCATAACCCGTTGTACTTTTCAGTAATC
ATGTAGTCGATATAAAAACTGCTCTCAATTAATACATGCATCAGGAACAT
CAAGGAAAATGGTTTAACAAATAGCATTTAATAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029502XLOC_029502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046203-exon-scaffold_106-1491911889:6656..7142TCONS_00046203-exon-scaffold_106-1491911889:6656..7142Clytia hemisphaericaexon
TCONS_00046203-exon-scaffold_106-1510915933:6656..7142TCONS_00046203-exon-scaffold_106-1510915933:6656..7142Clytia hemisphaericaexon
TCONS_00046203-exon-scaffold_106-1575043694:6656..7142TCONS_00046203-exon-scaffold_106-1575043694:6656..7142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:6656..7142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.765707	0.248895	0.144495	0.141366	0.1721	0	0.820364	0.307206	0.322623	0.266414	0.387882	0	0.509247	0.528859	0.0724656	0.155533	3.06567	2.65124	1.08528	1.27763	2.96131	2.7083	0.438972	0.13303	0	0.122285	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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