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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046198 ID=TCONS_00046198|Name=TCONS_00046198|organism=Clytia hemisphaerica|type=transcript|length=2609bpRun BLAST on NCBI transcript from alignment at scaffold_106:425928..436942- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046198 ID=TCONS_00046198|Name=TCONS_00046198|organism=Clytia hemisphaerica|type=transcript|length=11015bp|location=Sequence derived from alignment at scaffold_106:425928..436942- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046198 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 430.639 bits (1106), Expect = 1.663e-134 Identity = 244/709 (34.41%), Postives = 371/709 (52.33%), Query Frame = 1
Query: 307 VKITTSRTKRAATNVKEKLWSNGIIPYTVSSNFTGNEQVTIRKAITHWESHTCIQFILKTQQSSYVHFQNQNNCGCSSFVGRVDENAGQGINLEAGCLTYGTVLHELGHVIGFWHEHMRSDSNKHLTIFRHNIQPHALKNFERKNSKEIDSLGVDYDLGSVMHYSMDMFTKNVGSFSFVPKQPFKGV---IGQREQLSQKDKLQANLLYKCASCGKTLHQRTGEIQFPSQEMKYPSSKTSNPRSCEWRISLPHGQRLFLKFQNVK-FASKSCDESYLLLHSINKRNSSSYKLKYCHTNPPPTHLKVRNNLMVLTIHDIGNQQSTFRMKYQDLCGGKLTTTSDIMESPNFPDNYSPGDYCEWKIEVPRGQRILFNFNVLKLKKSPDCKKDHVEIID--THNAEILGHFCRLRQIGRSLLTSGSTAIVRFRSNSKKTRSGFSLQYSAEMNEC-LTGNGGCQHQCHDVISRHYCSCNHGYILQSDGRSCESDCKDQIIDLSPGHQYYLRSLNYPSNYPSRSNCRWKINALSSDSIVFQFQQIHLAGENNETCD-SLSFVSTDDHGKEQVVQKLCGSHLTVKELTVAANHVIVHFESNNNQIPFMKR-FLISVIADKNECLVDNGGCSHLCTNTPISYRCQCPFGFELSSDNHTCIFGSCTTTKYAHEGTVTSPGFPNKYFGGQNCVWNIFSVPGHRVQAKVEVKKKTFNALE 2406
K + R +RA T+ E++W G+IPY + NFTG+++ ++A+ HWE HTC+ FI +T + S++ F + CGC S+VGR Q I++ C +G V HELGHV+GFWHEH R D ++H+TI R NIQP NF + + E+ SLG YD S+MHY+ + F++ V + +P+Q GV IGQR +LSQ D QA LYKC +CG+TL TG P YPS C WRIS+ G+++ L F ++ F S+ C Y+ + R + ++C P + + L V F Y+ CGG + + ++SPN+PD+Y P C W+I V G + F ++++ C D++E+ D T + ++GHFC + + +S + ++F S+ ++GF+ + E++EC +GGC+H+C + + + C+C+ GY L +D + CE C I L+ + S +P YP+ NC W++ A + I QF+ L E N+ C V + ++ + CGS T + +T +N++ V F+S+N KR F +DK+EC DNGGC H C NT SY C+C G+ L + H C C + EGT+ SP +P+KY + C WNI S GHRV K TFN E
Sbjct: 140 AKTFSPRVRRATTSRTERIWPGGVIPYVIGGNFTGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIVF-SYRTCGCCSYVGRRG-GGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPACGETLQDTTGNFSAPGFPNGYPSYS-----HCVWRISVTPGEKIVLNFTSMDLFKSRLCWYDYVEVRDGYWRKAPLLG-RFCGDKIPEPLVSTDSRLWVEFRSSSNILGKGFFAAYEATCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKP-EDVKSSSNRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNG----TITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFEL--EGNDVCKYDFVEVRSGLSPDAKLHGRFCGSE-TPEVITSQSNNMRVEFKSDNT---VSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRV-------KLTFNEFE 822 HSP 2 Score: 129.028 bits (323), Expect = 2.672e-30 Identity = 99/405 (24.44%), Postives = 163/405 (40.25%), Query Frame = 1
Query: 931 ASCGKTLHQRTGEIQFPSQEMKYPSSKTSNPRSCEWRISLPHGQRLFLKFQNVKFAS-KSCDESYLLLHSINKRNSSSYKLKYCHTNPPPTHLKVRNNLMVLTIHDIGNQQSTFRMKY-------------------------------------------QDLCGGKLTTTSDIMESPNFPDNYSPGDYCEWKIEVPRGQRILFNFNVLKLKKSPDCKKDHVEIID--THNAEILGHFCRLRQIGRSLLTSGSTAI-VRFRSNSKKTRSGFSLQYSAEMNECLTGNGGCQHQCHDVISRHYCSCNHGYILQSDGRSC-ESDCKDQIIDLSPGHQYYLRSLNYPSNYPSRSNCRWKINALSSDSIVFQFQQIHLAGENNETCDSLSFVSTDDHGKEQVVQKLCGS 2001
A+CG +++ G+IQ P+ Y SK C WRI++ G + L FQ + SC YL + S+ +C P N L + + D ++ F + + CGG +T + + SP +P Y C W++ P RI F V +L+ + CK D VE+ + +A++ G FC ++TS S + V F+S++ ++ GF + ++ +EC NGGCQH+C + + C C +GY L +G C E+ C +I + + L S N+P YPSR C W I++ + + F + + D L D ++ + CGS
Sbjct: 462 ATCGGDMNKDAGQIQSPNYPDDYRPSK-----ECVWRITVSEGFHVGLTFQAFEIERHDSCAYDYLEVRD-GPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCKYDFVEVRSGLSPDAKLHGRFCGSETP--EVITSQSNNMRVEFKSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSV----EGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQHQECAYDHLEMYDGPD-SLAPILGRFCGS 853 The following BLAST results are available for this feature:
BLAST of TCONS_00046198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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