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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046196 ID=TCONS_00046196|Name=TCONS_00046196|organism=Clytia hemisphaerica|type=transcript|length=3225bpRun BLAST on NCBI protein sequence of TCONS_00046196-protein >TCONS_00046196-protein ID=TCONS_00046196-protein|Name=TCONS_00046196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=944bp MYCWQIFLFLFLCFCFCFDSISPAQAVDRYHNPCKAGCKQKDIVKITTSRRun BLAST on NCBI transcript from alignment at scaffold_106:425073..436932- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046196 ID=TCONS_00046196|Name=TCONS_00046196|organism=Clytia hemisphaerica|type=transcript|length=11860bp|location=Sequence derived from alignment at scaffold_106:425073..436932- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_106:425073..436932- >TCONS_00046196 ID=TCONS_00046196|Name=TCONS_00046196|organism=Clytia hemisphaerica|type=CDS|length=42525bp|location=Sequence derived from alignment at scaffold_106:425073..436932- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046196 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 493.041 bits (1268), Expect = 9.477e-156 Identity = 295/896 (32.92%), Postives = 458/896 (51.12%), Query Frame = 3
Query: 297 VKITTSRTKRAATNVKEKLWSNGIIPYTVSSNFTGNEQVTIRKAITHWESHTCIQFILKTQQSSYVHFQNQNNCGCSSFVGRVDENAGQGINLEAGCLTYGTVLHELGHVIGFWHEHMRSDSNKHLTIFRHNIQPHALKNFERKNSKEIDSLGVDYDLGSVMHYSMDMFTKNVGSFSFVPKQPFKGV---IGQREQLSQKDKLQANLLYKCASCGKTLHQRTGEIQFPSQEMKYPSSKTSNPRSCEWRISLPHGQRLFLKFQNVK-FASKSCDESYLLLHSINKRNSSSYKLKYCHTNPPPTHLKVRNNLMVLTIHDIGNQQSTFRMKYQDLCGGKLTTTSDIMESPNFPDNYSPGDYCEWKIEVPRGQRILFNFNVLKLKKSPDCKKDHVEIID--THNAEILGHFCRLRQIGRSLLTSGSTAIVRFRSNSKKTRSGFSLQYSAEMNEC-LTGNGGCQHQCHDVISRHYCSCNHGYILQSDGRSCESDCKDQIIDLSPGHQYYLRSLNYPSNYPSRSNCRWKINALSSDSIVFQFQQIHLAGENNETCD-SLSFVSTDDHGKEQVVQKLCGSHLTVKELTVAANHVIVHFESNNNQIPFMKR-FLISVIADKNECLVDNGGCSHLCTNTPISYRCQCPFGFELSSDNHTCIFGSCTTTKYAHEGTVTSPGFPNKYFGGQNCVWNIFSVPGHRVQA---KVEVKKKTFNALECPLMINGDGLCNGIL------MKNQTYITKDNQM--RIVSKFQHRHPLFKITFRSICGGKLEAKRTWQYIHSHLEYNSRVKYGPNIDCHWTIKTKADNNVNKRVLIVFETFHIESEP-CQFDFVEIFDGVGPKAPLIAKKCG-GYLRGKRIHSTGDSLKIHFKTDSSIHKKGFRMKYKEINVRD 2918
K + R +RA T+ E++W G+IPY + NFTG+++ ++A+ HWE HTC+ FI +T + S++ F + CGC S+VGR Q I++ C +G V HELGHV+GFWHEH R D ++H+TI R NIQP NF + + E+ SLG YD S+MHY+ + F++ V + +P+Q GV IGQR +LSQ D QA LYKC +CG+TL TG P YPS C WRIS+ G+++ L F ++ F S+ C Y+ + R + ++C P + + L V F Y+ CGG + + ++SPN+PD+Y P C W+I V G + F ++++ C D++E+ D T + ++GHFC + + +S + ++F S+ ++GF+ + E++EC +GGC+H+C + + + C+C+ GY L +D + CE C I L+ + S +P YP+ NC W++ A + I QF+ L E N+ C V + ++ + CGS T + +T +N++ V F+S+N KR F +DK+EC DNGGC H C NT SY C+C G+ L + H C C + EGT+ SP +P+KY + C WNI S GHRV+ + E+++ A + M +G IL K + + M R S + F+ + CGG+L+A+ + ++SH ++ Y C W I + V + F TF +E E C +D++E +DG AP + + CG G L + I+S GDSL I F+TD +I+KKGF +Y +D
Sbjct: 140 AKTFSPRVRRATTSRTERIWPGGVIPYVIGGNFTGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIVF-SYRTCGCCSYVGRRG-GGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPACGETLQDTTGNFSAPGFPNGYPSYS-----HCVWRISVTPGEKIVLNFTSMDLFKSRLCWYDYVEVRDGYWRKAPLLG-RFCGDKIPEPLVSTDSRLWVEFRSSSNILGKGFFAAYEATCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAFEIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKP-EDVKSSSNRLWMKFVSDGSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNG----TITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFEL--EGNDVCKYDFVEVRSGLSPDAKLHGRFCGSE-TPEVITSQSNNMRVEFKSDNT---VSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQHQECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRKGFQAVHSTECGGRLKAEVQTKELYSHAQFGDN-NYPSEARCDWVIVAEDGYGVE----LTFRTFEVEEEADCGYDYMEAYDGYDSSAPRLGRFCGSGPL--EEIYSAGDSLMIRFRTDDTINKKGFHARYTSTKFQD 1009 The following BLAST results are available for this feature:
BLAST of TCONS_00046196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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