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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046193 ID=TCONS_00046193|Name=TCONS_00046193|organism=Clytia hemisphaerica|type=transcript|length=1638bp
CTGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAG
GAGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCAC
GATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATAT
TGTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACG
CCAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAG
AGAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACT
AAAACCCAATTATCACCTAATGAAGCATTACAACgcacaaaagaaaatga
aattaaagTGGAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGC
CTGAGCACAAACCAAAGTCACCCAATATCaaagaatttaaagaaaaatta
ccaAAGATGACAGGTCGACCATCAATTCCGTCTCTATCGCCACACCAAGC
TTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTCAAGGAACCCC
CTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGCTCGATTCCAC
GGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCC
ACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTT
GTTACATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCG
GCCAACATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAgtc
caaaacaaaagaaccagTCGATCTAAATAACAACAAGGCGACAACAAAAG
GtccaaaatctccacattattCACCAGTTGGTCGAATCTCACCGCAATCA
AATAACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATT
CATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCAT
ACGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCC
TTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGC
ATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACT
CACATGCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGA
CATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCC
TGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGataata
acaacaacaataGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTAC
TCAGCAAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGA
CGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGA
AAATTAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGT
ATAATAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAA
ATACGCAACTCAATTGTAAATGATTAAATTATCAAACTtctaatttatga
aaaatataatttggcTTCACAAGCTGTATGTAAATAAT Run BLAST on NCBI transcript from alignment at scaffold_106:413931..419914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046193 ID=TCONS_00046193|Name=TCONS_00046193|organism=Clytia hemisphaerica|type=transcript|length=5984bp|location=Sequence derived from alignment at scaffold_106:413931..419914- (Clytia hemisphaerica)
CTGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAG
GAGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCAC
GATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATAT
TGTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACG
CCAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAG
AGAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACT
AAAACCCAATTATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGA
AATTAAAGGTAATGAAATTTTTAATTTTTCAAAGTTTAAAATTTAATACA
GTCAAGCAATATATCTCGGTGGTATGGTGATACCACTCAAGCTTCTAAAA
ACAAAAACTTTAACAATAATTAATTTCAAATTTAATTTTAATTTTTCATT
TCGATAGTTGTGAAAATACCTTGAAAGTGTTACATTTTACAAAACGTGTG
CTGAAGCTCTGCCGTTACGCATCTAATGCAATATGTTGGGAGGCATTTTG
AAACTGGGGCTACTGGTGATCATTAAGGGATATCGAGCAAACATACATAC
ACTGTGTAAACATGATTTCTTATCAAATTTATCATCGGGTTAAATCAATT
TTTGTATGTTCTGGCTGCTGAGCTTTTTAAAGGCTCTTCATATATATGTT
AATTTTTTTAAATTCTGACTTTGATCAAAGAATATTTCGGCGCGGTCTTT
TTCCTACGATTGGGCGAACTCGATACAAATTTCCCTATCACGCAAACTAC
CGCAAACAAATAGAACATCTGGCTCATCACTATTAGAATATTGAGAACAC
GTAGCAAAAATAAAATATACGAGAAATGTATATAAAAATATTTTTGTAAC
GAAAGACAAAAGCAAGGATAGGCCCCCGTGCAGTGAAAAAACGTAACAGC
CGTTAGACGGGTTTTGTTGACAAAATAGTTTTCAAAAAGATGGAAGATGG
TAAATTATATCGAAAATTTTGTATTTTGTTTCAAAAAAAAAAGAAGAAGA
TATTTTTACAAAATTTCCTTCAAGATGTTCACTGAGTAACTCAAAACAAT
GAAAAAATAATAAAAATGAGGGGAAATAGAAACATCTAACAAAACAATTA
CTTTTTTATGACTTCATTTCAATGTAGGCACAGCATGATTTATCAAACTT
TTTCCAACGTTTATTTAATTTCTTTTTCTGGCTCCCCCCTGACAGCGTAC
TAGAAAATAAATAGGGTGCAATATGTGCCATATTTGATGAAAATAACTCG
CAAACGTTTTGTTTCAATATTGTAACAACAGTTTTTTTGTCAAAAAGGCA
CCCTATTGTGATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATT
TTAGTGGAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGA
GCACAAACCAAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAA
AGATGACAGGTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCC
TATTGTTTTTAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAAC
GGTACAATATACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCT
TGAATCCCCTGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTA
CCTGACCAGATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCC
CTTCTTCACTTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGA
GGAGTAGGTTAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCA
CAAAGTCAAATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCAT
TTTATTATATTTCTATCTCTTATCNCCCAATTATCACCTAATGAAGCATT
ACAACGCACAAAAGAAAATGAAATTAAAGGTAATGAAATTTTTAATTTTT
CAAAGTTTAAAATTTAATACAGTCAAGCAATATATCTCGGTGGTATGGTG
ATACCACTCAAGCTTCTAAAAACAAAAACTTTAACAATAATTAATTTCAA
ATTTAATTTTAATTTTTCATTTCGATAGTTGTGAAAATACCTTGAAAGTG
TTACATTTTACAAAACGTGTGCTGAAGCTCTGCCGTTACGCATCTAATGC
AATATGTTGGGAGGCATTTTGAAACTGGGGCTACTGGTGATCATTAAGGG
ATATCGAGCAAACATACATACACTGTGTAAACATGATTTCTTATCAAATT
TATCATCGGGTTAAATCAATTTTTGTATGTTCTGGCTGCTGAGCTTTTTA
AAGGCTCTTCATATATATGTTAATTTTTTTAAATTCTGACTTTGATCAAA
GAATATTTCGGCGCGGTCTTTTTCCTACGATTGGGCGAACTCGATACAAA
TTTCCCTATCACGCAAACTACCGCAAACAAATAGAACATCTGGCTCATCA
CTATTAGAATATTGAGAACACGTAGCAAAAATAAAATATACGAGAAATGT
ATATAAAAATATTTTTGTAACGAAAGACAAAAGCAAGGATAGGCCCCCGT
GCAGTGAAAAAACGTAACAGCCGTTAGACGGGTTTTGTTGACAAAATAGT
TTTCAAAAAGATGGAAGATGGTAAATTATATCGAAAATTTTGTATTTTGT
TTCAAAAAAAAAAGAAGAAGATATTTTTACAAAATTTCCTTCAAGATGTT
CACTGAGTAACTCAAAACAATGAAAAAATAATAAAAATGAGGGGAAATAG
AAACATCTAACAAAACAATTACTTTTTTATGACTTCATTTCAATGTAGGC
ACAGCATGATTTATCAAACTTTTTCCAACGTTTATTTAATTTCTTTTTCT
GGCTCCCCCCTGACAGCGTACTAGAAAATAAATAGGGTGCAATATGTGCC
ATATTTGATGAAAATAACTCGCAAACGTTTTGTTTCAATATTGTAACAAC
AGTTTTTTTGTCAAAAAGGCACCCTATTGTGATGACGAGTCATGTTGATA
AAAATATTCCTTTTCATTATTTTAGTGGAGAACATTGAGAACAAACCAAG
TGTTGTGTCGCCAGGGCCTGAGCACAAACCAAAGTCACCCAATATCAAAG
AATTTAAAGAAAAATTACCAAAGATGACAGGTACGTTGCCCCTCCCAAAA
GATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTATTGTTCTTGT
AAAGGTTCGAATGAAAGAAACGGTACAATATACAATAACTATTTAAAAGT
TATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTTCTTTTTTGCT
TCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACATATGCTTCAAA
TAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTCCTTTGTTTCT
TTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATATTTGAATATGT
TTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAAACAAATTTGT
TTCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTCTTATCCTTTT
TTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCCGTCTCTATCG
CCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTT
CAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAG
GTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTTTTGTATCTAA
ATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTTTCGACAACTG
AGACCCCTTAAATATACGTGAAATTGACTTAAATTATTTTTCAAGTCAAG
GCTCTCGCTGATTAACCANGTCAAAAAGGCACCCTATTGTGATGACGAGT
CATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAAAATATTGAGA
ACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAGCCAAAGTCACCC
AATATCAAAGAATTTAAAGAAAAATTACCAAAAATGACAGGTACGTTGCC
CCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTA
TTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATATACAATAACT
ATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTT
CTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACAT
ATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTC
CTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATAT
TTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAA
ACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTC
TTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCC
GTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAAC
CAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCAT
TTAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTT
TTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTT
TCGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTAAATTATTTT
TCAAGTCAAGGCTCTCGCTGATTAACCAACTCTTATGATTCGCATAAATC
AATCAATAACCAATACTATGATCCTAATATTACAGCTCGATTCCACGGCT
CACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCACCC
ACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTA
CATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCA
ACATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAGTCCAAA
ACAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACAACAAAAGGTCC
AAAATCTCCACATTATTCACCAGTTGGTCGAATCTCACCGCAATCAAATA
ACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATG
GATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGG
CGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCG
ATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCG
CCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACA
TGCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATC
AAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTA
CGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGATAATAACAA
CAACAATAGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAG
CAAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGACGAT
CTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAAT
TAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTATAA
TAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAATAC
GCAACTCAATTGTAAATGATTAAATTATCAAACTTCTAATTTATGAAAAA
TATAATTTGGCTTCACAAGCTGTATGTAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046193-exon-scaffold_106-1575043694:419557..419914 | TCONS_00046193-exon-scaffold_106-1575043694:419557..419914 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1575043694:418356..418460 | TCONS_00046193-exon-scaffold_106-1575043694:418356..418460 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1575043694:416115..416240 | TCONS_00046193-exon-scaffold_106-1575043694:416115..416240 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1575043694:413931..414979 | TCONS_00046193-exon-scaffold_106-1575043694:413931..414979 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1510915933:419557..419914 | TCONS_00046193-exon-scaffold_106-1510915933:419557..419914 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1510915933:418356..418460 | TCONS_00046193-exon-scaffold_106-1510915933:418356..418460 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1510915933:416115..416240 | TCONS_00046193-exon-scaffold_106-1510915933:416115..416240 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1510915933:413931..414979 | TCONS_00046193-exon-scaffold_106-1510915933:413931..414979 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1491911889:419557..419914 | TCONS_00046193-exon-scaffold_106-1491911889:419557..419914 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1491911889:418356..418460 | TCONS_00046193-exon-scaffold_106-1491911889:418356..418460 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1491911889:416115..416240 | TCONS_00046193-exon-scaffold_106-1491911889:416115..416240 | Clytia hemisphaerica | exon |
| TCONS_00046193-exon-scaffold_106-1491911889:413931..414979 | TCONS_00046193-exon-scaffold_106-1491911889:413931..414979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:413931..419914 - |
Blast
BLAST of TCONS_00046193 vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 2.367e-24 Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query: 82 RSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQRVLAAQVALRRQQMQESKQ 261
R+PKCARCRNHG S+LKGHK YCRW+DC+C KC LI ERQRV+AAQVALRRQQ QE +
Sbjct: 66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
The following BLAST results are available for this feature:
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