TCONS_00046191 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046191
Unique Name	TCONS_00046191
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1637

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_106:413931..419913-
coding sequence from alignment at scaffold_106:413931..419913-

transcript sequence

>TCONS_00046191 ID=TCONS_00046191|Name=TCONS_00046191|organism=Clytia hemisphaerica|type=transcript|length=1637bp
TGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAGG
AGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACG
ATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATT
GTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGC
CAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGA
GAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTA
AAACCCAATTATCACCTAATGAAGCATTACAACgcacaaaagaaaatgaa
attaaagTGGAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCC
TGAGCACAAACCAAAGTCACCCAATATCaaagaatttaaagaaaaattac
caAAGATGACAGGTCGACCATCAATTCCGTCTCTATCGCCACACCAAGCT
TACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTCAAGGAACCCCC
TTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGCTCGATTCCACG
GCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCA
CCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTG
TTACATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGG
CCAACATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAgtcc
aaaacaaaagaaccagTCGATCTAAATAACAACAAGGCGACAACAAAAGG
tccaaaatctccacattattCACCAGTTGGTCGAATCTCACCGCAATCAA
ATAACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTC
ATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATA
CGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCT
TCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCA
TCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTC
ACATGCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGAC
ATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCT
GTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGataataa
caacaacaataGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACT
CAGCAAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGAC
GATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAA
AATTAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTA
TAATAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAA
TACGCAACTCAATTGTAAATGATTAAATTATCAAACTtctaatttatgaa
aaatataatttggcTTCACAAGCTGTATGTAAATAAT

Run BLAST on NCBI

protein sequence of TCONS_00046191-protein

>TCONS_00046191-protein ID=TCONS_00046191-protein|Name=TCONS_00046191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MSMLDDKKRSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQR
VLAAQVALRRQQMQESKQRPGPLPRGDGFSTKTQLSPNEALQRTKENEIK
VENIENKPSVVSPGPEHKPKSPNIKEFKEKLPKMTGRPSIPSLSPHQAYS
PPFYYRKPIFFKEPPSAFQMWAPHLTKARFHGSPREMQRFTPYPSPPPPT
VPSSSECHRGVDRPCYIDEYCTKKSFVYPPPANMRHEYISHSNPVFQSKT
KEPVDLNNNKATTKGPKSPHYSPVGRISPQSNNDLSSPSSYGRQRSPFMD
RRSPSYIDHHGRSPYGERRSPIYLERRSPPSFDSKHSPIPDRFTKEGASP
TPGVTSPKDTSKTDSHANTPSIEMLARLFPRHQTTTLKNVLSNCNNDPVR
AIEEILDRVPAEDNNNNNSINQKLPPVKNTYSAKRNEPIIDNKHGSNDDL
SNLAKAFDIPVSEEKIRSPKVVHW

Run BLAST on NCBI

transcript from alignment at scaffold_106:413931..419913-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046191 ID=TCONS_00046191|Name=TCONS_00046191|organism=Clytia hemisphaerica|type=transcript|length=5983bp|location=Sequence derived from alignment at scaffold_106:413931..419913- (Clytia hemisphaerica)
TGACAACTGACTTTAATTTAAAAGAGGTCTAAAAGTGGTATATTCCCAGG
AGGAAAATGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACG
ATGCAGGAACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATT
GTCGATGGAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGC
CAACGGGTCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGA
GAGTAAACAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTA
AAACCCAATTATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGAA
ATTAAAGGTAATGAAATTTTTAATTTTTCAAAGTTTAAAATTTAATACAG
TCAAGCAATATATCTCGGTGGTATGGTGATACCACTCAAGCTTCTAAAAA
CAAAAACTTTAACAATAATTAATTTCAAATTTAATTTTAATTTTTCATTT
CGATAGTTGTGAAAATACCTTGAAAGTGTTACATTTTACAAAACGTGTGC
TGAAGCTCTGCCGTTACGCATCTAATGCAATATGTTGGGAGGCATTTTGA
AACTGGGGCTACTGGTGATCATTAAGGGATATCGAGCAAACATACATACA
CTGTGTAAACATGATTTCTTATCAAATTTATCATCGGGTTAAATCAATTT
TTGTATGTTCTGGCTGCTGAGCTTTTTAAAGGCTCTTCATATATATGTTA
ATTTTTTTAAATTCTGACTTTGATCAAAGAATATTTCGGCGCGGTCTTTT
TCCTACGATTGGGCGAACTCGATACAAATTTCCCTATCACGCAAACTACC
GCAAACAAATAGAACATCTGGCTCATCACTATTAGAATATTGAGAACACG
TAGCAAAAATAAAATATACGAGAAATGTATATAAAAATATTTTTGTAACG
AAAGACAAAAGCAAGGATAGGCCCCCGTGCAGTGAAAAAACGTAACAGCC
GTTAGACGGGTTTTGTTGACAAAATAGTTTTCAAAAAGATGGAAGATGGT
AAATTATATCGAAAATTTTGTATTTTGTTTCAAAAAAAAAAGAAGAAGAT
ATTTTTACAAAATTTCCTTCAAGATGTTCACTGAGTAACTCAAAACAATG
AAAAAATAATAAAAATGAGGGGAAATAGAAACATCTAACAAAACAATTAC
TTTTTTATGACTTCATTTCAATGTAGGCACAGCATGATTTATCAAACTTT
TTCCAACGTTTATTTAATTTCTTTTTCTGGCTCCCCCCTGACAGCGTACT
AGAAAATAAATAGGGTGCAATATGTGCCATATTTGATGAAAATAACTCGC
AAACGTTTTGTTTCAATATTGTAACAACAGTTTTTTTGTCAAAAAGGCAC
CCTATTGTGATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATTT
TAGTGGAGAACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAG
CACAAACCAAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAA
GATGACAGGTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCCT
ATTGTTTTTAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAACG
GTACAATATACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCTT
GAATCCCCTGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTAC
CTGACCAGATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCCC
TTCTTCACTTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGAG
GAGTAGGTTAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCAC
AAAGTCAAATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCATT
TTATTATATTTCTATCTCTTATCNCCCAATTATCACCTAATGAAGCATTA
CAACGCACAAAAGAAAATGAAATTAAAGGTAATGAAATTTTTAATTTTTC
AAAGTTTAAAATTTAATACAGTCAAGCAATATATCTCGGTGGTATGGTGA
TACCACTCAAGCTTCTAAAAACAAAAACTTTAACAATAATTAATTTCAAA
TTTAATTTTAATTTTTCATTTCGATAGTTGTGAAAATACCTTGAAAGTGT
TACATTTTACAAAACGTGTGCTGAAGCTCTGCCGTTACGCATCTAATGCA
ATATGTTGGGAGGCATTTTGAAACTGGGGCTACTGGTGATCATTAAGGGA
TATCGAGCAAACATACATACACTGTGTAAACATGATTTCTTATCAAATTT
ATCATCGGGTTAAATCAATTTTTGTATGTTCTGGCTGCTGAGCTTTTTAA
AGGCTCTTCATATATATGTTAATTTTTTTAAATTCTGACTTTGATCAAAG
AATATTTCGGCGCGGTCTTTTTCCTACGATTGGGCGAACTCGATACAAAT
TTCCCTATCACGCAAACTACCGCAAACAAATAGAACATCTGGCTCATCAC
TATTAGAATATTGAGAACACGTAGCAAAAATAAAATATACGAGAAATGTA
TATAAAAATATTTTTGTAACGAAAGACAAAAGCAAGGATAGGCCCCCGTG
CAGTGAAAAAACGTAACAGCCGTTAGACGGGTTTTGTTGACAAAATAGTT
TTCAAAAAGATGGAAGATGGTAAATTATATCGAAAATTTTGTATTTTGTT
TCAAAAAAAAAAGAAGAAGATATTTTTACAAAATTTCCTTCAAGATGTTC
ACTGAGTAACTCAAAACAATGAAAAAATAATAAAAATGAGGGGAAATAGA
AACATCTAACAAAACAATTACTTTTTTATGACTTCATTTCAATGTAGGCA
CAGCATGATTTATCAAACTTTTTCCAACGTTTATTTAATTTCTTTTTCTG
GCTCCCCCCTGACAGCGTACTAGAAAATAAATAGGGTGCAATATGTGCCA
TATTTGATGAAAATAACTCGCAAACGTTTTGTTTCAATATTGTAACAACA
GTTTTTTTGTCAAAAAGGCACCCTATTGTGATGACGAGTCATGTTGATAA
AAATATTCCTTTTCATTATTTTAGTGGAGAACATTGAGAACAAACCAAGT
GTTGTGTCGCCAGGGCCTGAGCACAAACCAAAGTCACCCAATATCAAAGA
ATTTAAAGAAAAATTACCAAAGATGACAGGTACGTTGCCCCTCCCAAAAG
ATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTATTGTTCTTGTA
AAGGTTCGAATGAAAGAAACGGTACAATATACAATAACTATTTAAAAGTT
ATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTTCTTTTTTGCTT
CGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACATATGCTTCAAAT
AATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTCCTTTGTTTCTT
TTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATATTTGAATATGTT
TTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAAACAAATTTGTT
TCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTCTTATCCTTTTT
TGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCCGTCTCTATCGC
CACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTC
AAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGG
TACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTTTTGTATCTAAA
TTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTTTCGACAACTGA
GACCCCTTAAATATACGTGAAATTGACTTAAATTATTTTTCAAGTCAAGG
CTCTCGCTGATTAACCANGTCAAAAAGGCACCCTATTGTGATGACGAGTC
ATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAAAATATTGAGAA
CAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAGCCAAAGTCACCCA
ATATCAAAGAATTTAAAGAAAAATTACCAAAAATGACAGGTACGTTGCCC
CTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTAT
TGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATATACAATAACTA
TTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTTC
TTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACATA
TGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTCC
TTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATATT
TGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAAA
CAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTCT
TATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCCG
TCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAACC
AATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCATT
TAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTTT
TGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTTT
CGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTAAATTATTTTT
CAAGTCAAGGCTCTCGCTGATTAACCAACTCTTATGATTCGCATAAATCA
ATCAATAACCAATACTATGATCCTAATATTACAGCTCGATTCCACGGCTC
ACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACCACCTCCACCCA
CAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTAC
ATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAA
CATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTCCAGTCCAAAA
CAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACAACAAAAGGTCCA
AAATCTCCACATTATTCACCAGTTGGTCGAATCTCACCGCAATCAAATAA
CGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATGG
ATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGGC
GAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGA
TTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGC
CTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACAT
GCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATCA
AACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTAC
GTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGATAATAACAAC
AACAATAGCATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGC
AAAACGAAATGAACCAATTATTGACAATAAACATGGAAGTAATGACGATC
TATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATT
AGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCCTCTTGTATAAT
AAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGTCTGTAAATACG
CAACTCAATTGTAAATGATTAAATTATCAAACTTCTAATTTATGAAAAAT
ATAATTTGGCTTCACAAGCTGTATGTAAATAAT

Coding sequence (CDS) from alignment at scaffold_106:413931..419913-

>TCONS_00046191 ID=TCONS_00046191|Name=TCONS_00046191|organism=Clytia hemisphaerica|type=CDS|length=5700bp|location=Sequence derived from alignment at scaffold_106:413931..419913- (Clytia hemisphaerica)
CTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCA
TCACCACCTCCACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGT
TGACCGCCCTTGTTACATCGATGAATACTGCACTAAGAAATCTTTCGTAT
ATCCTCCACCGGCCAACATGCGCCATGAATACATCTCACACTCAAATCCA
GTTTTCCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGC
GACAACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGAATCT
CACCGCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCGACAG
CGATCACCATTCATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGG
TAGATCTCCATACGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTT
CTCCACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACC
AAAGAAGGCGCATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTC
TAAAACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCAAGAT
TATTCCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGC
AATAATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGC
TGAAGATAATAACAACAACAATAGCATCAATCAAAAACTTCCACCTGTCA
AAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGACAATAAACAT
GGAAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGT
ATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAAGTCGACC
ATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATT
ACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGG
GCACCTCATTTAACCAAAGTGGAGAACATTGAGAACAAACCAAGTGTTGT
GTCGCCAGGGCCTGAGCACAAACCAAAGTCACCCAATATCAAAGAATTTA
AAGAAAAATTACCAAAGATGACAGATGAGTATGTTAGACGATAAAAAGAG
ATCACCAAAATGTGCACGATGCAGGAACCATGGATTCGATTCTTCATTGA
AAGGCCATAAAGGATATTGTCGATGGAGAGATTGTATGTGCCCGAAATGT
GTACTCATTGTTGAACGCCAACGGGTCTTAGCGGCGCAAGTTGCGTTACG
CAGACAACAAATGCAAGAGAGTAAACAAAGACCAGGCCCATTACCAAGAG
GAGATGGATTTTCAACTAAAACCCAATTATCACCTAATGAAGCATTACAA
CGCACAAAAGAAAATGAAATTAAAGCTCGATTCCACGGCTCACCTCGTGA
AATGCAACGATTCACGCCTTACCCATCACCACCTCCACCCACAGTGCCCT
CTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTACATCGATGAA
TACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAACATGCGCCA
TGAATACATCTCACACTCAAATCCAGTTTTCCAGTCCAAAACAAAAGAAC
CAGTCGATCTAAATAACAACAAGGCGACAACAAAAGGTCCAAAATCTCCA
CATTATTCACCAGTTGGTCGAATCTCACCGCAATCAAATAACGACCTATC
TTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATGGATCGTCGCT
CTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGGCGAAAGACGA
TCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGATTCAAAACA
CTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGCCTACACCGG
GAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACATGCTAATACT
CCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATCAAACAACCAC
TTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTACGTGCAATTG
AAGAAATTTTGGACAGAGTGCCAGCTGAAGATAATAACAACAACAATAGC
ATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGCAAAACGAAA
TGAACCAATTATTGACAATAAACATGGAAGTAATGACGATCTATCAAATC
TAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCG
AAAGTTGTACACTGGTAAGTCGACCATCAATTCCGTCTCTATCGCCACAC
CAAGCTTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTCAAGGA
ACCCCCTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGTGGAGA
ACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCA
AAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAAGATGACAGA
TGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACGATGCAGG
AACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATTGTCGATG
GAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGCCAACGGG
TCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGAGAGTAAA
CAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTAAAACCCA
ATTATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGAAATTAAAG
CTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCA
TCACCACCTCCACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGT
TGACCGCCCTTGTTACATCGATGAATACTGCACTAAGAAATCTTTCGTAT
ATCCTCCACCGGCCAACATGCGCCATGAATACATCTCACACTCAAATCCA
GTTTTCCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGC
GACAACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGAATCT
CACCGCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCGACAG
CGATCACCATTCATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGG
TAGATCTCCATACGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTT
CTCCACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACC
AAAGAAGGCGCATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTC
TAAAACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCAAGAT
TATTCCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGC
AATAATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGC
TGAAGATAATAACAACAACAATAGCATCAATCAAAAACTTCCACCTGTCA
AAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGACAATAAACAT
GGAAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGT
ATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAAGTCGACC
ATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATT
ACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGG
GCACCTCATTTAACCAAAGTGGAGAACATTGAGAACAAACCAAGTGTTGT
GTCGCCAGGGCCTGAGCACAAACCAAAGTCACCCAATATCAAAGAATTTA
AAGAAAAATTACCAAAGATGACAGATGAGTATGTTAGACGATAAAAAGAG
ATCACCAAAATGTGCACGATGCAGGAACCATGGATTCGATTCTTCATTGA
AAGGCCATAAAGGATATTGTCGATGGAGAGATTGTATGTGCCCGAAATGT
GTACTCATTGTTGAACGCCAACGGGTCTTAGCGGCGCAAGTTGCGTTACG
CAGACAACAAATGCAAGAGAGTAAACAAAGACCAGGCCCATTACCAAGAG
GAGATGGATTTTCAACTAAAACCCAATTATCACCTAATGAAGCATTACAA
CGCACAAAAGAAAATGAAATTAAAGCTCGATTCCACGGCTCACCTCGTGA
AATGCAACGATTCACGCCTTACCCATCACCACCTCCACCCACAGTGCCCT
CTTCCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTACATCGATGAA
TACTGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAACATGCGCCA
TGAATACATCTCACACTCAAATCCAGTTTTCCAGTCCAAAACAAAAGAAC
CAGTCGATCTAAATAACAACAAGGCGACAACAAAAGGTCCAAAATCTCCA
CATTATTCACCAGTTGGTCGAATCTCACCGCAATCAAATAACGACCTATC
TTCACCTTCATCGTACGGTCGACAGCGATCACCATTCATGGATCGTCGCT
CTCCCTCCTACATTGACCACCACGGTAGATCTCCATACGGCGAAAGACGA
TCTCCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGATTCAAAACA
CTCTCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGCCTACACCGG
GAGTAACATCACCGAAAGACACTTCTAAAACAGACTCACATGCTAATACT
CCATCTATCGAAATGCTTGCAAGATTATTCCCACGACATCAAACAACCAC
TTTAAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTACGTGCAATTG
AAGAAATTTTGGACAGAGTGCCAGCTGAAGATAATAACAACAACAATAGC
ATCAATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGCAAAACGAAA
TGAACCAATTATTGACAATAAACATGGAAGTAATGACGATCTATCAAATC
TAGCAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCG
AAAGTTGTACACTGGTAAGTCGACCATCAATTCCGTCTCTATCGCCACAC
CAAGCTTACTCACCGCCCTTCTATTACAGAAAACCAATATTCTTCAAGGA
ACCCCCTTCTGCATTCCAGATGTGGGCACCTCATTTAACCAAAGTGGAGA
ACATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCA
AAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAAGATGACAGA
TGAGTATGTTAGACGATAAAAAGAGATCACCAAAATGTGCACGATGCAGG
AACCATGGATTCGATTCTTCATTGAAAGGCCATAAAGGATATTGTCGATG
GAGAGATTGTATGTGCCCGAAATGTGTACTCATTGTTGAACGCCAACGGG
TCTTAGCGGCGCAAGTTGCGTTACGCAGACAACAAATGCAAGAGAGTAAA
CAAAGACCAGGCCCATTACCAAGAGGAGATGGATTTTCAACTAAAACCCA
ATTATCACCTAATGAAGCATTACAACGCACAAAAGAAAATGAAATTAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029498	XLOC_029498	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046191-exon-scaffold_106-1575043694:419557..419913	TCONS_00046191-exon-scaffold_106-1575043694:419557..419913	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1575043694:416685..416789	TCONS_00046191-exon-scaffold_106-1575043694:416685..416789	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1575043694:415205..415330	TCONS_00046191-exon-scaffold_106-1575043694:415205..415330	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1575043694:413931..414979	TCONS_00046191-exon-scaffold_106-1575043694:413931..414979	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1510915933:419557..419913	TCONS_00046191-exon-scaffold_106-1510915933:419557..419913	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1510915933:416685..416789	TCONS_00046191-exon-scaffold_106-1510915933:416685..416789	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1510915933:415205..415330	TCONS_00046191-exon-scaffold_106-1510915933:415205..415330	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1510915933:413931..414979	TCONS_00046191-exon-scaffold_106-1510915933:413931..414979	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1491911889:419557..419913	TCONS_00046191-exon-scaffold_106-1491911889:419557..419913	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1491911889:416685..416789	TCONS_00046191-exon-scaffold_106-1491911889:416685..416789	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1491911889:415205..415330	TCONS_00046191-exon-scaffold_106-1491911889:415205..415330	Clytia hemisphaerica	exon
TCONS_00046191-exon-scaffold_106-1491911889:413931..414979	TCONS_00046191-exon-scaffold_106-1491911889:413931..414979	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046191-protein	TCONS_00046191-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_106	supercontig	scaffold_106:413931..419913 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0169058	0	0	0	0	0	0	0	0	0.437609	0.142489	0	0	0.413578	0.852528	0.597469	0.862007	0.978825	1.04358	0.139714	0.336861	0.254104	0.376102	1.18919	1.33251	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001275	DM_DNA-bd
IPR005173	DMA

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding

Blast

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BLAST of TCONS_00046191 vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.350e-24
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 3

Query:   81 RSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQRVLAAQVALRRQQMQESKQ 260
            R+PKCARCRNHG  S+LKGHK YCRW+DC+C KC LI ERQRV+AAQVALRRQQ QE  +
Sbjct:   66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125

The following BLAST results are available for this feature:

BLAST of TCONS_00046191 vs. Swiss-Prot (Human)

BLAST of TCONS_00046191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DMTA2	2.350e-24	75.00	Doublesex- and mab-3-related transcription factor ...	[more]

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TCONS_00046191 (transcript) - C. hemisphaerica