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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046172 ID=TCONS_00046172|Name=TCONS_00046172|organism=Clytia hemisphaerica|type=transcript|length=1526bp
ataGTGTGAACTCCCCTCTTCTTTAAGGGAGATCCAACTTTTCAAGAAAG
GCTTTATAGGGGGAATAAGAGATTTTCTGAgtaaaatggggggtttgagt
TTTTAGGGGGGTATTACATAAAAATAGGGGGATAACaactttttggtaaa
aatatgTATTATATCTTAAACTGGTCAAAGAATTTATATAGTCCAACAAA
ATAATAGCAATgtaaatggcaaattttttgcctgcggcgtcATTTTATAT
CCTTTTTTACCatataaatttttgttattAAACGGTTTGTGAACCACCAT
TGTAGTTAGTGCtggttcaaaaaaatttaaaaatagggGGATGCATAAAC
CCAGCATTTATCCTATTCCACTCAGACGTTTTCCCATTCAACACAACTCT
CTGATGCCTATTTTCAAGAAAGCTGCGTATTAAGGAAAGCAGTGGTCCAG
TCACCCCATAAGTTTGAGTTTGAAAAGCAAGCCATCATGCCATACCCCCA
TCGAATGCCTTTgatttgaaatatctaaaaacacaCCCCTGGTATCTAAA
GAAGGGTTCGCATCAAACTCTGTAAAAATGTAATGTGTAATGGACAACAG
CTGAGAAATGCAAGAATCACCCTCCCGAAAACCAGGCTGGCATAGAGAAA
AAAGATTATTagtttcaaaatatctgtaaagTGCATCATAGATATTTTTc
caaacattcttccaaatattCTTCTTTCTGGATCACACTTGGCTTTGAAA
TTCACATTGAAGCAGATTGAAGAGCCTTTTGCTCTGTTTTGCCCTCATCA
ACAAGGGCTTACTACTTAATAGTTACCTCAATTTCTTTTCGTCAAATCTT
AATCAATAAGAAATAAGAATGGAAAACCAAATACATAGAAGTGCAATGGC
AcattaaaattagaaatgatatTAAATTTGACAGTCCAATTTGCAATTAC
CCCAATCAAAAATGGAAATAATGTACTTGAATCCAAATCTATTTGGCCTT
GTTtgtactttttttttgtttactagagattttttgttgaaaagtgctta
aaataaaatttgaaatttaccaTGATGAGTTGGTTAGATACATTGCAAAT
ACCGAGTGGAATGAATGTCAAACTTGATGGAAATATATGTAAGGTTATAT
TGAACAATCCAAAAAAACTGAATCCCATGAGCATTTATATATATCAAGCA
CTTAGAGATGTGTTGAAAAATGCTGGCAAAGACAATTCTATAAAAGTGGT
GTTATTGACAGGATCAGGGAAATATTTCACCAGTGGGAATGACCTATCAG
CTGTGTTCCAAACTTTTAAAGAACACGGTTCTAAGGATCCAGCACAATTA
AATTCACCATTTAAAGACATGATTGATGCAATGATTGATTTTCCCAAGCT
TTTTGTTGTTGGTATTAATGGACCAGCAGTCGGAATAGGAGTAACAATGC
TACCTTTGGCAGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGACA
CCATTCACGAAACTTGCTCTCATTNT Run BLAST on NCBI transcript from alignment at scaffold_106:312761..314969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046172 ID=TCONS_00046172|Name=TCONS_00046172|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at scaffold_106:312761..314969- (Clytia hemisphaerica)
ATAGTGTGAACTCCCCTCTTCTTTAAGGGAGATCCAACTTTTCAAGAAAG
GCTTTATAGGGGGAATAAGAGATTTTCTGAGTAAAATGGGGGGTTTGAGT
TTTTAGGGGGGTATTACATAAAAATAGGGGGATAACAACTTTTTGGTAAA
AATATGTATTATATCTTAAACTGGTCAAAGAATTTATATAGTCCAACAAA
ATAATAGCAATGTAAATGGCAAATTTTTTGCCTGCGGCGTCATTTTATAT
CCTTTTTTACCATATAAATTTTTGTTATTAAACGGTTTGTGAACCACCAT
TGTAGTTAGTGCTGGTTCAAAAAAATTTAAAAATAGGGGGATGCATAAAC
CCAGCATTTATCCTATTCCACTCAGACGTTTTCCCATTCAACACAACTCT
CTGATGCCTATTTTCAAGAAAGCTGCGTATTAAGGAAAGCAGTGGTCCAG
TCACCCCATAAGTTTGAGTTTGAAAAGCAAGCCATCATGCCATACCCCCA
TCGAATGCCTTTGATTTGAAATATCTAAAAACACACCCCTGGTATCTAAA
GAAGGGTTCGCATCAAACTCTGTAAAAATGTAATGTGTAATGGACAACAG
CTGAGAAATGCAAGAATCACCCTCCCGAAAACCAGGCTGGCATAGAGAAA
AAAGATTATTAGTTTCAAAATATCTGTAAAGTGCATCATAGATATTTTTC
CAAACATTCTTCCAAATATTCTTCTTTCTGGATCACACTTGGCTTTGAAA
TTCACATTGAAGCAGATTGAAGAGCCTTTTGCTCTGTTTTGCCCTCATCA
ACAAGGGCTTACTACTTAATAGTTACCTCAATTTCTTTTCGTCAAATCTT
AATCAATAAGAAATAAGAATGGAAAACCAAATACATAGAAGTGCAATGGC
ACATTAAAATTAGAAATGATATTAAATTTGACAGTCCAATTTGCAATTAC
CCCAATCAAAAATGGAAATAATGTACTTGAATCCAAATCTATTTGGCCTT
GTTTGTACTTTTTTTTTGTTTACTAGAGATTTTTTGTTGAAAAGTGCTTA
AAATAAAATTTGAAATTTACCATGATGAGTTGGTTAGATACATTGCAAAT
ACCGAGTGGAATGAATGTCAAACTTGATGGAAATATATGTAAGGTTATAT
TGAACAATCCAAAAAAACTGAATCCCATGAGCATTTATGTAAGTTAATTT
TGCTTTCAAAAACCTTTACCAATTTCTTGAATTGTCAAGCTCCAAAATTT
ACTTTTAAGTTTTTTCTATTTAAGTCTAGCAAAAATAGGTGCTGGCTTTG
TGCGGATGGTAAGGGTCGCAAAATCAACATAAAGTCAAAATAATCTCTGT
AAGGTTCAGGATTTCCCCATTTGTATCTTTTTAAGGGAACGAAAATCATG
AAAAGTAAAAAAATCTCAAGGGTCACTTTCGTAAGTCTTGTCTCTCTAAG
TGTCACTTTTGGAAGGTCCGGTCCAGAAATTCTTCAACAATATCCGGGGT
GTTGAGAAGTGCCTTTTTTGTTAGGTTTTGAGGAGTTGCTGGAAAAGTTT
TAAGATTGCTTGATTTGTATGAAATCTTAGTCATTTGGATTACACTAAAA
TAATTTGCTGAAAGCTTTGTGTGTGATAATTTTCCTCTCTTCTCAGATAT
ATCAAGCACTTAGAGATGTGTTGAAAAATGCTGGCAAAGACAATTCTATA
AAAGTGGTGTTATTGACAGGATCAGGGAAATATTTCACCAGTGGGAATGA
CCTATCAGCTGTGTTCCAAACTTTTAAAGAACACGGTTCTAAGGATCCAG
CACAATTAAATTCACCATTTAAGTAAGAAAGTCAACTCAGTTCAAAATTT
CAAGCGTTAGACAATTTCATAAACAAACGATCAAGAAAGCTTTCTTTCAC
TTATGATAATGCCTTTGCCTTTTATCATAAATTTTTCTATATCTGACAAA
AATTTGAAAATATTCGTCAAGTTCAAAATAACTTGTTGGCTGAGAACAGA
ACTGGGATCCTTGCTTTTCACGTTCGATGTCAATTTCTTTTCCTTAGAGA
CATGATTGATGCAATGATTGATTTTCCCAAGCTTTTTGTTGTTGGTATTA
ATGGACCAGCAGTCGGAATAGGAGTAACAATGCTACCTTTGGCAGACTTT
GTCTATTGTAGTGACAATGCGACATTTTTGACACCATTCACGAAACTTGC
TCTCATTNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046172-exon-scaffold_106-1575043694:313782..314969 | TCONS_00046172-exon-scaffold_106-1575043694:313782..314969 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1575043694:313148..313323 | TCONS_00046172-exon-scaffold_106-1575043694:313148..313323 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1575043694:312761..312922 | TCONS_00046172-exon-scaffold_106-1575043694:312761..312922 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1510915933:313782..314969 | TCONS_00046172-exon-scaffold_106-1510915933:313782..314969 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1510915933:313148..313323 | TCONS_00046172-exon-scaffold_106-1510915933:313148..313323 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1510915933:312761..312922 | TCONS_00046172-exon-scaffold_106-1510915933:312761..312922 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1491911889:313782..314969 | TCONS_00046172-exon-scaffold_106-1491911889:313782..314969 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1491911889:313148..313323 | TCONS_00046172-exon-scaffold_106-1491911889:313148..313323 | Clytia hemisphaerica | exon |
| TCONS_00046172-exon-scaffold_106-1491911889:312761..312922 | TCONS_00046172-exon-scaffold_106-1491911889:312761..312922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:312761..314969 - |
Blast
BLAST of TCONS_00046172 vs. Swiss-Prot (Human)
Match: ECI2 (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4) HSP 1 Score: 103.99 bits (258), Expect = 4.334e-24 Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 1117 VKLDGNICKVILNNPKKLNPMSIYIYQALRDVLKNAGKDNSIKVVLLTGSGKYFTSGNDLSAVFQTFKEHGSKDPAQLNSPF-KDMIDAMIDFPKLFVVGINGPAVGIGVTMLPLADFVYCSDNATFLTPFTKL 1515
V + I K++ N PKK N ++ +Y + LK A KD+SI + +LTG+G Y++SGNDL+ F G ++ A+ N+ ++ + IDFPK + +NGPAVGI VT+L L D VY SD ATF TPF+ L
Sbjct: 144 VTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTN-FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHL 275
The following BLAST results are available for this feature:
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