TCONS_00046171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046171
Unique NameTCONS_00046171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046171 ID=TCONS_00046171|Name=TCONS_00046171|organism=Clytia hemisphaerica|type=transcript|length=2355bp
ataGTGTGAACTCCCCTCTTCTTTAAGGGAGATCCAACTTTTCAAGAAAG
GCTTTATAGGGGGAATAAGAGATTTTCTGAgtaaaatggggggtttgagt
TTTTAGGGGGGTATTACATAAAAATAGGGGGATAACaactttttggtaaa
aatatgTATTATATCTTAAACTGGTCAAAGAATTTATATAGTCCAACAAA
ATAATAGCAATgtaaatggcaaattttttgcctgcggcgtcATTTTATAT
CCTTTTTTACCatataaatttttgttattAAACGGTTTGTGAACCACCAT
TGTAGTTAGTGCtggttcaaaaaaatttaaaaatagggGGATGCATAAAC
CCAGCATTTATCCTATTCCACTCAGACGTTTTCCCATTCAACACAACTCT
CTGATGCCTATTTTCAAGAAAGCTGCGTATTAAGGAAAGCAGTGGTCCAG
TCACCCCATAAGTTTGAGTTTGAAAAGCAAGCCATCATGCCATACCCCCA
TCGAATGCCTTTgatttgaaatatctaaaaacacaCCCCTGGTATCTAAA
GAAGGGTTCGCATCAAACTCTGTAAAAATGTAATGTGTAATGGACAACAG
CTGAGAAATGCAAGAATCACCCTCCCGAAAACCAGGCTGGCATAGAGAAA
AAAGATTATTagtttcaaaatatctgtaaagTGCATCATAGATATTTTTc
caaacattcttccaaatattCTTCTTTCTGGATCACACTTGGCTTTGAAA
TTCACATTGAAGCAGATTGAAGAGCCTTTTGCTCTGTTTTGCCCTCATCA
ACAAGGGCTTACTACTTAATAGTTACCTCAATTTCTTTTCGTCAAATCTT
AATCAATAAGAAATAAGAATGGAAAACCAAATACATAGAAGTGCAATGGC
AcattaaaattagaaatgatatTAAATTTGACAGTCCAATTTGCAATTAC
CCCAATCAAAAATGGAAATAATGTACTTGAATCCAAATCTATTTGGCCTT
GTTtgtactttttttttgtttactagagattttttgttgaaaagtgctta
aaataaaatttgaaatttaccaTGATGAGTTGGTTAGATACATTGCAAAT
ACCGAGTGGAATGAATGTCAAACTTGATGGAAATATATGTAAGGTTATAT
TGAACAATCCAAAAAAACTGAATCCCATGAGCATTTATATATATCAAGCA
CTTAGAGATGTGTTGAAAAATGCTGGCAAAGACAATTCTATAAAAGTGGT
GTTATTGACAGGATCAGGGAAATATTTCACCAGTGGGAATGACCTATCAG
CTGTGTTCCAAACTTTTAAAGAACACGGTTCTAAGGATCCAGCACAATTA
AATTCACCATTTAAAGACATGATTGATGCAATGATTGATTTTCCCAAGCT
TTTTGTTGTTGGTATTAATGGACCAGCAGTCGGAATAGGAGTAACGATGC
TACCCTTGGCAGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGACA
CCATTCACAAAACTTGCTCTCATTCCTGAAGCTTGTTCTTCACACACATT
TGCTAAAATTATGGGATATTTAAGGGCGAAGGATCTTTTGATTGGTGGAA
AGAAATTGAACTCAAATGAAGCTTTACAATGTGGTTTGGTGACCGAGGTG
ATACCAAAAGCACAATTTAATGAAGTTCTTGAAAAGAAAGTGACATATCT
TGCATCGCTTCTCCCAGAGTCCGTTATGATGTCGAAGAAATTGATTGGTG
ATGAAGAACATGATCTTTTACACCGAGTCAATGAacgggaaaatgaaaaa
cttgcTGGTCGCTGGTTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATT
CCTTAGTAGGAAATCCAAACTCTaaattttgacagatttttttatatCCT
TCCTACGAAGGCTATTATGTATTGCCCATCTACAATTaccgccgaaatat
attggcaattttgggtattttaacgcttttcagaatttaaaggtcgggcg
agaattgcagtttcagtacttccactctGCTTCATTGggtttttcgattt
gggaggggttaagtggcttccaggctattctgccttattggaacattttt
gagcttttagatactgagatcctaaggtccttaagtcttaagtctaatgt
taaaactcagagttaaaactccaCTTGCGAACTGTACTTCAAAgcgctta
aaaatcacttgcggttttaaagttttcagggaattccccttttgtgccaa
atatttcggcgctgattgtagCTCATTTGATAACgcataaaaatgtttga
aaatcagGACGCCGTTGGCTGTTTAGGTATTCAGTAAATCTTATAAATTC
TCGAC
Run BLAST on NCBI

protein sequence of TCONS_00046171-protein

>TCONS_00046171-protein ID=TCONS_00046171-protein|Name=TCONS_00046171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MMSWLDTLQIPSGMNVKLDGNICKVILNNPKKLNPMSIYIYQALRDVLKN
AGKDNSIKVVLLTGSGKYFTSGNDLSAVFQTFKEHGSKDPAQLNSPFKDM
IDAMIDFPKLFVVGINGPAVGIGVTMLPLADFVYCSDNATFLTPFTKLAL
IPEACSSHTFAKIMGYLRAKDLLIGGKKLNSNEALQCGLVTEVIPKAQFN
EVLEKKVTYLASLLPESVMMSKKLIGDEEHDLLHRVNERENEKLAGRWLS
KEGQAVVKQFLSRKSKL
Run BLAST on NCBI

transcript from alignment at scaffold_106:307180..314969-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046171 ID=TCONS_00046171|Name=TCONS_00046171|organism=Clytia hemisphaerica|type=transcript|length=7790bp|location=Sequence derived from alignment at scaffold_106:307180..314969- (Clytia hemisphaerica)
ATAGTGTGAACTCCCCTCTTCTTTAAGGGAGATCCAACTTTTCAAGAAAG
GCTTTATAGGGGGAATAAGAGATTTTCTGAGTAAAATGGGGGGTTTGAGT
TTTTAGGGGGGTATTACATAAAAATAGGGGGATAACAACTTTTTGGTAAA
AATATGTATTATATCTTAAACTGGTCAAAGAATTTATATAGTCCAACAAA
ATAATAGCAATGTAAATGGCAAATTTTTTGCCTGCGGCGTCATTTTATAT
CCTTTTTTACCATATAAATTTTTGTTATTAAACGGTTTGTGAACCACCAT
TGTAGTTAGTGCTGGTTCAAAAAAATTTAAAAATAGGGGGATGCATAAAC
CCAGCATTTATCCTATTCCACTCAGACGTTTTCCCATTCAACACAACTCT
CTGATGCCTATTTTCAAGAAAGCTGCGTATTAAGGAAAGCAGTGGTCCAG
TCACCCCATAAGTTTGAGTTTGAAAAGCAAGCCATCATGCCATACCCCCA
TCGAATGCCTTTGATTTGAAATATCTAAAAACACACCCCTGGTATCTAAA
GAAGGGTTCGCATCAAACTCTGTAAAAATGTAATGTGTAATGGACAACAG
CTGAGAAATGCAAGAATCACCCTCCCGAAAACCAGGCTGGCATAGAGAAA
AAAGATTATTAGTTTCAAAATATCTGTAAAGTGCATCATAGATATTTTTC
CAAACATTCTTCCAAATATTCTTCTTTCTGGATCACACTTGGCTTTGAAA
TTCACATTGAAGCAGATTGAAGAGCCTTTTGCTCTGTTTTGCCCTCATCA
ACAAGGGCTTACTACTTAATAGTTACCTCAATTTCTTTTCGTCAAATCTT
AATCAATAAGAAATAAGAATGGAAAACCAAATACATAGAAGTGCAATGGC
ACATTAAAATTAGAAATGATATTAAATTTGACAGTCCAATTTGCAATTAC
CCCAATCAAAAATGGAAATAATGTACTTGAATCCAAATCTATTTGGCCTT
GTTTGTACTTTTTTTTTGTTTACTAGAGATTTTTTGTTGAAAAGTGCTTA
AAATAAAATTTGAAATTTACCATGATGAGTTGGTTAGATACATTGCAAAT
ACCGAGTGGAATGAATGTCAAACTTGATGGAAATATATGTAAGGTTATAT
TGAACAATCCAAAAAAACTGAATCCCATGAGCATTTATGTAAGTTAATTT
TGCTTTCAAAAACCTTTACCAATTTCTTGAATTGTCAAGCTCCAAAATTT
ACTTTTAAGTTTTTTCTATTTAAGTCTAGCAAAAATAGGTGCTGGCTTTG
TGCGGATGGTAAGGGTCGCAAAATCAACATAAAGTCAAAATAATCTCTGT
AAGGTTCAGGATTTCCCCATTTGTATCTTTTTAAGGGAACGAAAATCATG
AAAAGTAAAAAAATCTCAAGGGTCACTTTCGTAAGTCTTGTCTCTCTAAG
TGTCACTTTTGGAAGGTCCGGTCCAGAAATTCTTCAACAATATCCGGGGT
GTTGAGAAGTGCCTTTTTTGTTAGGTTTTGAGGAGTTGCTGGAAAAGTTT
TAAGATTGCTTGATTTGTATGAAATCTTAGTCATTTGGATTACACTAAAA
TAATTTGCTGAAAGCTTTGTGTGTGATAATTTTCCTCTCTTCTCAGATAT
ATCAAGCACTTAGAGATGTGTTGAAAAATGCTGGCAAAGACAATTCTATA
AAAGTGGTGTTATTGACAGGATCAGGGAAATATTTCACCAGTGGGAATGA
CCTATCAGCTGTGTTCCAAACTTTTAAAGAACACGGTTCTAAGGATCCAG
CACAATTAAATTCACCATTTAAGTAAGAAAGTCAACTCAGTTCAAAATTT
CAAGCGTTAGACAATTTCATAAACAAACGATCAAGAAAGCTTTCTTTCAC
TTATGATAATGCCTTTGCCTTTTATCATAAATTTTTCTATATCTGACAAA
AATTTGAAAATATTCGTCAAGTTCAAAATAACTTGTTGGCTGAGAACAGA
ACTGGGATCCTTGCTTTTCACGTTCGATGTCAATTTCTTTTCCTTAGAGA
CATGATTGATGCAATGATTGATTTTCCCAAGCTTTTTGTTGTTGGTATTA
ATGGACCAGCAGTCGGAATAGGAGTAACAATGCTACCTTTGGCAGACTTT
GTCTATTGTAGTGACAATGCGACATTTTTGACACCATTCACGAAACTTGC
TCTCATTNTTCACCTTTGATGTCAATTTCTTTTCCTTAGAGACATGATTG
ATGCAATGATTGATTTTCCCAAGCTTTTTGTTGTTGGTATTAATGGACCA
GCAGTCGGAATAGGAGTAACGATGCTACCCTTGGCAGACTTTGTCTATTG
TAGTGACAATGCGACATTTTTGACACCATTCACAAAACTTGCTCTCATTC
CTGAAGCTTGTTCTTCACACACATTTGCTAAAATTATGGGATATTTAAGG
GTAAGCCGTAGATTTTATTGTTGTTTTGATCCTCTCTTGGCATTTTTCAT
TATCATTCAATGTTTGCAAAAGTCCAAAACAATGAAAAGTAAAAGTCTCA
AATTCATCCTTTTTGTCAAAAAGTAGTATCCATTATTTATTTTAGGCGAA
GGATCTTTTGATTGGTGGAAAGAAATTGAACTCAAATGAAGCTTTACAAT
GTGGTTTGGTGACCGAGGTGATACCAAAAGCACAATTTAATGAAGTTCTT
GAAAAGAAAGTGACATATCTTGCATCGCTTCTCCCAGAGGTATGTCATTC
TATGATCTAATTTAACTTCAAAGTATTGGCCGCAATTAGTCGATAATAGA
CGATAAACACTGACAGGGATAGAAGTTTGCAATAAGGACCCATATATCCT
TTCCCATAGGGAATAATTTGAGTGAAGCAGACTCTTATTCCGATTCATTT
GCAACATTTTTAATTTTTAAACTCTTAGGGAGATATCTATAGTCTATTGC
AGAAATTGAAACTTATAAAGTATTAGATTTCAAGTTGATATATTTCTCCT
TCAAGATAATATAATTTACAGTTCAAATGATACACGTGTCTGTTGTGATA
AATATTACTTCTGAACGATTGGCGGGCAACCTGATTCACCTAGAATTGAT
AAATTGAAAGTTACATTGCAAAAAGGATGTTTGTAATTTTCATCAAGGTT
GTCTGTCATCCAAAAATGTGATACTAGATTGATGAAAATTGTAGATAAAA
CAGCCCAAATTTCCAAATTAAAGGGTGCGCCTTTTTAATGGCAGAATACT
TAAAGCAATTGCAAGGACATCTATTGCAAAGACATTGCTTGCAAGGTGCT
TTTTGTAGAGTGGGTCTTGTTGATATGGAGCTCTCTGTGTGTCAGTTTGG
TGTTCAGAGGTTTCACCCTTCCATTTTTCCATATCTATCTGTAACCATAA
GAAGAAAGAACAATATGTGAAATAGTTCCTAAAATTAAGACCAAGGTCAA
AAACTTCCAAGATAACTCCATTTTTTGTTGCTTTTATGTTTCAAAGCTCA
AAATCAAACCATCTACAACAGTTCAGGGAAAGCAAATAATTGAGGTGGTT
GGAAAAACAAGAATAAGGTTGAATTTATTTCACACTTTTCGGAAGAATAA
AAATCTAAAAGAACGTGGAGATTTTTAGAAAATATTTCACCAGCTGCTTA
AATATCTTCATAATTTGCTTTGTCCTTGAAATTTACTTCCTTCAATTTTT
GATGTTTTCCACCACCCTGGCTCCTTTTTGCCAGTAGCTCAGTGAAAAAA
ACTGAAACTTTTTGTCATAGAAAGCCATTTACCCTATTTTTATCAGGGGG
TGTTTTCCACCACCTGGGCCCCTTTTTGCCAAAAGCTCAGTGAAAAAATT
GAAACTTTTTGACACTTAAAAATTTTAGCACAATCTTATTAGCAAGCTGA
ATATTATTTTACAATCATACAACCGTTAGATCAGGTTTTAAGACTTTTTG
TACATACGTGTCATAAAATCCAGCTAGAATCCCAAATGCCAAAATAAGTC
TTTAAAATATCCCTTAAAAATCCCTTTAAAAAAGCTATGATAACTTTTCC
TATAAAAAAGGGGTCGGGTTTAGCCAAATTTTACGAAAATGAAGTGAAGT
GTTTGTTCGAATATTTTTGGACCTACAACCTCGGATGTACTATAAATCAA
CCCATGTCCGTCCGTCTGTTCGTTCCTCTGTTATCAGTTTTTCTCGGGAT
TGGCTCATAAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAAT
AACCTGAAATGTGACGGAACCCGATTTCAAAAAATAATTGGACAACAAAA
TTTCTTCATTAGTTTTTCTAATCTTTGACAGAAAGATAAAGGATCAGGTT
CCCTGAAAAGTTACTGAGGCCGTTTTTTCCTAGTCCAGGAGCTGGAGCTC
AACTACTTTTTGCCTTTGAAAATCTGATGGTGGAAAAAGTAGAGAGTCCA
GTGAAACCCCAAATTAATGTAACTGACATTTTCAACTGTCACAGCAAATT
TGAATTTAAAACCAATCAGAATTCCCTCTTTTTTTAATTTATGACTATAG
TGTTCGCATAATTTAATATCAAAAAGCGAAGATAGTATACGGCAGATTCT
CTGACTAGTTTTTTCCGGACAATTTTTTCGCCCGAAATAATTGGATTTCC
TTATTTGGGAAAATTCCCTTTTGTCATTTTTAGGGAAAATAAGCATTTCT
GGCTATTGACTTTGTATTTTTTTTGATTTTTAGTTTTCATTTTTATACTA
TCGTTGTCATTTTCTATTTTCTATTTTCTTATTACCTTCAGGTAAGGTTC
ATTCAGCATGTAGATTGCTATCCAAGATTATTTTAATAATTTTTGTGAAA
TAAACTAATAAAGGGTTGAAACCTGACTTCACTTTTGTCAACCTAAAATA
ATTTTCAAATTACTTTAAAGAAAATTTTTGACAAAAGGCAGAATTTTTCG
TGAAAATTTTTTTGCGGAATTTATCCAAAATTCTTGAAAAGTTTCTTTCC
ACGTAAATTTTTTTCCTAAATTAGCAATCCCTGCGTTATTTAGCTGTATT
CCGCGTTTTTTGAGCCTTTGGATGTTCTTAATTTTTTGAATTTTGAGCCT
AATATATGTTCCTTAAATTTAACCATTTTGTGAGTATTTTAGTGCAACTT
CCTAAAATGTCGGTGATTTAGATTCTCATATAGTTTTGCTTGTAGAGTTT
TTGCTTATAGAAAACGTGTAACCGGTGGAAGAATGTTGTTAGTCTATTTT
ATCCTCTGAGATTATTATAACGGCATATTTTTCTAGTTCGAAAAAACACT
CCTCAATGAGGGGTGTTTATTCGTTTCATAATGAAAAATATTTCTCATCG
ATGCGAAATTTGTATAGCTTTATTGCTAACCCTGCTATTATCTCTCTTAT
TGACACTCTAATTATTCAAACTAATTATTGTCGCTATAGCGCCATTTTTT
GCTCCTAAAACCACGTGTTTTTTAGCTGCCTGTTGTTATCACCTTTACGT
TTGTCCCCATGATTTTGTTTTTCTAAGTCTTCTTCTTCAAATACTAAGAT
GGGTCATATTCTAGTTGCAACCGAAAGATATCCATTGTCATTTCAAATTT
TTTCGAATTACAGAAAGGTTCGCTTTATAGAAAGTATTTCATGAGGGTTT
CCCCTTGATGAGGCCCCCCAGCGGCACCCCTAATCACGCCATCACACAAA
AAAATTTTCTTCATTACGCATCACGAAAATCGCTAAAATTTGTCATCACG
CAAAAAATAGTGAAAATAGCTCAAATCACGCATTACGCCTCAAATTTTTG
CCCTATCACGCATCACGACATAATCTTGATCACGCCATCACGCCAAAAAA
AAACTAATCACGCAAGCCAAAAGTCCCAATCACGCCATCACGCCATCACG
CAAAACTGCTGGGGGCCTCCTTGATAGGAACTAAGGAAGAGTTCAAATTC
TAGAAAGATTCGAATAATAGAAGTTCGAATTAACGAGAGTCCGCTGTACT
TTGAAGCCTCCTGATTCCAGCTATAATAGTACTTGGAGTTTCATTTTACA
ATGTCCTCGTATACACGTTTTTTATAAGAACATCTAAAAGTTTTGAAGCT
TTCCGATGTTCTTAACTTTTTGTGTTTTAAACCTAAAAATGTTCTTAACA
TTTTCTTATTTTCACCATTTTGTGTTCATTTTTCTAAGAATTAGGGTGTT
TTTGAGTCCACAGAGCCTTAAAATGTTCTTAACTTGTTCTTAGTATTTTG
GCCATCACAGGCTTGTCCATGCTCTTATTTTTTTGTGCCAGCTTAAGCTT
TCTTTCTCTATGTTCTTATAAATCTCGAATATATTTTTTCTTTTTTCGTC
TTCAAAAAAGCCGACATTATGTTGTCTTATTGTTATTCTAGCTGTCTTTA
ATGATCATAAATTTGTTGACACAATCTTTTGTTCGAATCTTCAAAGACTG
TTTTCCTAGCTGCCGAATTACGTGCAAACAATTAACTTTTGTGACTTTTT
CATTTTTTTCTTTTACTTTCTGGTTTAATTGCGGCGCAATCGAATTAATT
GGTGTGAAATTTCAGGTCAGAAAACCATTCAAATTCCTTGTCTCAAATAG
GAATATGCTATTTCGGGATAAAGTCTTCATAGTATAAGTAGGCTATTGGT
AATGCATTATGGTTTGTTAAGATGGTTTGTACTGTATCCTGTTTCAGAAA
CGCCAGCTTTAGACAGTAAAAAGAAAGAGTCTGGTCTAGTCGTAGTCGAA
ATTAGTTTTTATTATGATGAAGGTGTATCGATTCGCTCAAGACTCTGGTC
TATAATACTGTATGTTTGTCTTTAACACACTGAATTTAAGACTGTTTTCA
AGTATTCTCGTTTTTTCTTCAAGCAAAGAACTTCACTAAAAGCCGAGGTA
AACTATTCCACCATTTCATCCAACGTTTTCTCTATTGGACAGAATGTTGG
AATCGTTTACTCGAATGCAAAAATCGGTAACGAAGAAAAAAGTTTTTGCT
ATAGATTCTACCCCCATGGGGCTAATAGGGCTAAAATCTTTTTAATTTGC
CTGTTGGGTTCTTGATGTTTGGCTACCCAAGCCTTATGTTCTTATATAGT
CTGTTCTGTAATTTGCCATTCAAGTTAGTTAGATTGTGAATCAATTCATT
ATAGTCCGTTATGATGTCGAAGAAATTGATTGGTGATGAAGAACATGATC
TTTTACACCGAGTCAATGAACGGGAAAATGAAAAACTTGCTGGTCGCTGG
TTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCTTAGTAGGAAATC
CAAACTCTAAATTTTGACAGATTTTTTTATATCCTTCCTACGAAGGCTAT
TATGTATTGCCCATCTACAATTACCGCCGAAATATATTGGCAATTTTGGG
TATTTTAACGCTTTTCAGAATTTAAAGGTCGGGCGAGAATTGCAGTTTCA
GTACTTCCACTCTGCTTCATTGGGTTTTTCGATTTGGGAGGGGTTAAGTG
GCTTCCAGGCTATTCTGCCTTATTGGAACATTTTTGAGCTTTTAGATACT
GAGATCCTAAGGTCCTTAAGTCTTAAGTCTAATGTTAAAACTCAGAGTTA
AAACTCCACTTGCGAACTGTACTTCAAAGCGCTTAAAAATCACTTGCGGT
TTTAAAGTTTTCAGGGAATTCCCCTTTTGTGCCAAATATTTCGGCGCTGA
TTGTAGCTCATTTGATAACGCATAAAAATGTTTGAAAATCAGGACGCCGT
TGGCTGTTTAGGTATTCAGTAAATCTTATAAATTCTCGAC

Coding sequence (CDS) from alignment at scaffold_106:307180..314969-

>TCONS_00046171 ID=TCONS_00046171|Name=TCONS_00046171|organism=Clytia hemisphaerica|type=CDS|length=4020bp|location=Sequence derived from alignment at scaffold_106:307180..314969- (Clytia hemisphaerica)
TCCGTTATGATGTCGAAGAAATTGATTGGTGATGAAGAACATGATCTTTT
ACACCGAGTCAATGAACGGGAAAATGAAAAACTTGCTGGTCGCTGGTTGT
CAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCTTAGTAGGAAATCCAAA
CTCTAAGCGAAGGATCTTTTGATTGGTGGAAAGAAATTGAACTCAAATGA
AGCTTTACAATGTGGTTTGGTGACCGAGGTGATACCAAAAGCACAATTTA
ATGAAGTTCTTGAAAAGAAAGTGACATATCTTGCATCGCTTCTCCCAGAG
AGACATGATTGATGCAATGATTGATTTTCCCAAGCTTTTTGTTGTTGGTA
TTAATGGACCAGCAGTCGGAATAGGAGTAACGATGCTACCCTTGGCAGAC
TTTGTCTATTGTAGTGACAATGCGACATTTTTGACACCATTCACAAAACT
TGCTCTCATTCCTGAAGCTTGTTCTTCACACACATTTGCTAAAATTATGG
GATATTTAAGGATATATCAAGCACTTAGAGATGTGTTGAAAAATGCTGGC
AAAGACAATTCTATAAAAGTGGTGTTATTGACAGGATCAGGGAAATATTT
CACCAGTGGGAATGACCTATCAGCTGTGTTCCAAACTTTTAAAGAACACG
GTTCTAAGGATCCAGCACAATTAAATTCACCATTTAAATGATGAGTTGGT
TAGATACATTGCAAATACCGAGTGGAATGAATGTCAAACTTGATGGAAAT
ATATGTAAGGTTATATTGAACAATCCAAAAAAACTGAATCCCATGAGCAT
TTATTCCGTTATGATGTCGAAGAAATTGATTGGTGATGAAGAACATGATC
TTTTACACCGAGTCAATGAACGGGAAAATGAAAAACTTGCTGGTCGCTGG
TTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCTTAGTAGGAAATC
CAAACTCTAAGCGAAGGATCTTTTGATTGGTGGAAAGAAATTGAACTCAA
ATGAAGCTTTACAATGTGGTTTGGTGACCGAGGTGATACCAAAAGCACAA
TTTAATGAAGTTCTTGAAAAGAAAGTGACATATCTTGCATCGCTTCTCCC
AGAGAGACATGATTGATGCAATGATTGATTTTCCCAAGCTTTTTGTTGTT
GGTATTAATGGACCAGCAGTCGGAATAGGAGTAACGATGCTACCCTTGGC
AGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGACACCATTCACAA
AACTTGCTCTCATTCCTGAAGCTTGTTCTTCACACACATTTGCTAAAATT
ATGGGATATTTAAGGATATATCAAGCACTTAGAGATGTGTTGAAAAATGC
TGGCAAAGACAATTCTATAAAAGTGGTGTTATTGACAGGATCAGGGAAAT
ATTTCACCAGTGGGAATGACCTATCAGCTGTGTTCCAAACTTTTAAAGAA
CACGGTTCTAAGGATCCAGCACAATTAAATTCACCATTTAAATGATGAGT
TGGTTAGATACATTGCAAATACCGAGTGGAATGAATGTCAAACTTGATGG
AAATATATGTAAGGTTATATTGAACAATCCAAAAAAACTGAATCCCATGA
GCATTTATTCCGTTATGATGTCGAAGAAATTGATTGGTGATGAAGAACAT
GATCTTTTACACCGAGTCAATGAACGGGAAAATGAAAAACTTGCTGGTCG
CTGGTTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCTTAGTAGGA
AATCCAAACTCTAAGCGAAGGATCTTTTGATTGGTGGAAAGAAATTGAAC
TCAAATGAAGCTTTACAATGTGGTTTGGTGACCGAGGTGATACCAAAAGC
ACAATTTAATGAAGTTCTTGAAAAGAAAGTGACATATCTTGCATCGCTTC
TCCCAGAGAGACATGATTGATGCAATGATTGATTTTCCCAAGCTTTTTGT
TGTTGGTATTAATGGACCAGCAGTCGGAATAGGAGTAACGATGCTACCCT
TGGCAGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGACACCATTC
ACAAAACTTGCTCTCATTCCTGAAGCTTGTTCTTCACACACATTTGCTAA
AATTATGGGATATTTAAGGATATATCAAGCACTTAGAGATGTGTTGAAAA
ATGCTGGCAAAGACAATTCTATAAAAGTGGTGTTATTGACAGGATCAGGG
AAATATTTCACCAGTGGGAATGACCTATCAGCTGTGTTCCAAACTTTTAA
AGAACACGGTTCTAAGGATCCAGCACAATTAAATTCACCATTTAAATGAT
GAGTTGGTTAGATACATTGCAAATACCGAGTGGAATGAATGTCAAACTTG
ATGGAAATATATGTAAGGTTATATTGAACAATCCAAAAAAACTGAATCCC
ATGAGCATTTATTCCGTTATGATGTCGAAGAAATTGATTGGTGATGAAGA
ACATGATCTTTTACACCGAGTCAATGAACGGGAAAATGAAAAACTTGCTG
GTCGCTGGTTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCTTAGT
AGGAAATCCAAACTCTAAGCGAAGGATCTTTTGATTGGTGGAAAGAAATT
GAACTCAAATGAAGCTTTACAATGTGGTTTGGTGACCGAGGTGATACCAA
AAGCACAATTTAATGAAGTTCTTGAAAAGAAAGTGACATATCTTGCATCG
CTTCTCCCAGAGAGACATGATTGATGCAATGATTGATTTTCCCAAGCTTT
TTGTTGTTGGTATTAATGGACCAGCAGTCGGAATAGGAGTAACGATGCTA
CCCTTGGCAGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGACACC
ATTCACAAAACTTGCTCTCATTCCTGAAGCTTGTTCTTCACACACATTTG
CTAAAATTATGGGATATTTAAGGATATATCAAGCACTTAGAGATGTGTTG
AAAAATGCTGGCAAAGACAATTCTATAAAAGTGGTGTTATTGACAGGATC
AGGGAAATATTTCACCAGTGGGAATGACCTATCAGCTGTGTTCCAAACTT
TTAAAGAACACGGTTCTAAGGATCCAGCACAATTAAATTCACCATTTAAA
TGATGAGTTGGTTAGATACATTGCAAATACCGAGTGGAATGAATGTCAAA
CTTGATGGAAATATATGTAAGGTTATATTGAACAATCCAAAAAAACTGAA
TCCCATGAGCATTTATTCCGTTATGATGTCGAAGAAATTGATTGGTGATG
AAGAACATGATCTTTTACACCGAGTCAATGAACGGGAAAATGAAAAACTT
GCTGGTCGCTGGTTGTCAAAAGAAGGCCAAGCTGTCGTTAAACAATTCCT
TAGTAGGAAATCCAAACTCTAAGCGAAGGATCTTTTGATTGGTGGAAAGA
AATTGAACTCAAATGAAGCTTTACAATGTGGTTTGGTGACCGAGGTGATA
CCAAAAGCACAATTTAATGAAGTTCTTGAAAAGAAAGTGACATATCTTGC
ATCGCTTCTCCCAGAGAGACATGATTGATGCAATGATTGATTTTCCCAAG
CTTTTTGTTGTTGGTATTAATGGACCAGCAGTCGGAATAGGAGTAACGAT
GCTACCCTTGGCAGACTTTGTCTATTGTAGTGACAATGCGACATTTTTGA
CACCATTCACAAAACTTGCTCTCATTCCTGAAGCTTGTTCTTCACACACA
TTTGCTAAAATTATGGGATATTTAAGGATATATCAAGCACTTAGAGATGT
GTTGAAAAATGCTGGCAAAGACAATTCTATAAAAGTGGTGTTATTGACAG
GATCAGGGAAATATTTCACCAGTGGGAATGACCTATCAGCTGTGTTCCAA
ACTTTTAAAGAACACGGTTCTAAGGATCCAGCACAATTAAATTCACCATT
TAAATGATGAGTTGGTTAGATACATTGCAAATACCGAGTGGAATGAATGT
CAAACTTGATGGAAATATATGTAAGGTTATATTGAACAATCCAAAAAAAC
TGAATCCCATGAGCATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029493XLOC_029493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046171-exon-scaffold_106-1575043694:313782..314969TCONS_00046171-exon-scaffold_106-1575043694:313782..314969Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1575043694:313148..313323TCONS_00046171-exon-scaffold_106-1575043694:313148..313323Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1575043694:312520..312730TCONS_00046171-exon-scaffold_106-1575043694:312520..312730Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1575043694:312231..312374TCONS_00046171-exon-scaffold_106-1575043694:312231..312374Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1575043694:307180..307815TCONS_00046171-exon-scaffold_106-1575043694:307180..307815Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1510915933:313782..314969TCONS_00046171-exon-scaffold_106-1510915933:313782..314969Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1510915933:313148..313323TCONS_00046171-exon-scaffold_106-1510915933:313148..313323Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1510915933:312520..312730TCONS_00046171-exon-scaffold_106-1510915933:312520..312730Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1510915933:312231..312374TCONS_00046171-exon-scaffold_106-1510915933:312231..312374Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1510915933:307180..307815TCONS_00046171-exon-scaffold_106-1510915933:307180..307815Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1491911889:313782..314969TCONS_00046171-exon-scaffold_106-1491911889:313782..314969Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1491911889:313148..313323TCONS_00046171-exon-scaffold_106-1491911889:313148..313323Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1491911889:312520..312730TCONS_00046171-exon-scaffold_106-1491911889:312520..312730Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1491911889:312231..312374TCONS_00046171-exon-scaffold_106-1491911889:312231..312374Clytia hemisphaericaexon
TCONS_00046171-exon-scaffold_106-1491911889:307180..307815TCONS_00046171-exon-scaffold_106-1491911889:307180..307815Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046171-proteinTCONS_00046171-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:307180..314969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0857	10.5244	12.4701	13.3162	4.8084	3.70579	4.37451	4.26234	3.8719	4.37761	3.18347	3.34763	4.47707	4.07114	5.40704	5.03719	3.18612	2.95564	5.17111	7.32081	2.43908	2.083	7.83276	6.40245	1.6813	2.31066	1.50216	1.16211	4.79709	4.62024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014748Crontonase_C
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00046171 vs. Swiss-Prot (Human)
Match: ECI2 (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4)

HSP 1 Score: 203.371 bits (516), Expect = 1.318e-57
Identity = 113/253 (44.66%), Postives = 154/253 (60.87%), Query Frame = 1 
Query: 1117 VKLDGNICKVILNNPKKLNPMSIYIYQALRDVLKNAGKDNSIKVVLLTGSGKYFTSGNDLSAVFQTFKEHGSKDPAQLNSPF-KDMIDAMIDFPKLFVVGINGPAVGIGVTMLPLADFVYCSDNATFLTPFTKLALIPEACSSHTFAKIMGYLRAKDLLIGGKKLNSNEALQCGLVTEVIPKAQFNEVLEKKVTYLASLLPESVMMSKKLIGDEEHDLLHRVNERENEKLAGRWLSKEGQAVVKQFLSRKSKL 1872
            V  +  I K++ N PKK N ++  +Y  +   LK A KD+SI + +LTG+G Y++SGNDL+  F      G ++ A+ N+   ++ +   IDFPK  +  +NGPAVGI VT+L L D VY SD ATF TPF+ L   PE CSS+TF KIM   +A ++LI GKKL + EA   GLVTEV P + F + +  ++   A L P ++ +SK++I   E + LH VN  E   L GRWLS E    V  FLSRKSKL
Sbjct:  144 VTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTN-FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 394
The following BLAST results are available for this feature:
BLAST of TCONS_00046171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ECI21.318e-5744.66Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo... [more]
back to top