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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046160 ID=TCONS_00046160|Name=TCONS_00046160|organism=Clytia hemisphaerica|type=transcript|length=4612bpRun BLAST on NCBI protein sequence of TCONS_00046160-protein >TCONS_00046160-protein ID=TCONS_00046160-protein|Name=TCONS_00046160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1537bp XDDLINAYYDKQIIIMAKAKSFCGTYKKLVFKWHLYQITDWDFQHRASSWRun BLAST on NCBI transcript from alignment at scaffold_106:197410..227381- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046160 ID=TCONS_00046160|Name=TCONS_00046160|organism=Clytia hemisphaerica|type=transcript|length=29972bp|location=Sequence derived from alignment at scaffold_106:197410..227381- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_106:197410..227381- >TCONS_00046160 ID=TCONS_00046160|Name=TCONS_00046160|organism=Clytia hemisphaerica|type=CDS|length=78387bp|location=Sequence derived from alignment at scaffold_106:197410..227381- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046160 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 244.588 bits (623), Expect = 6.557e-65 Identity = 128/363 (35.26%), Postives = 216/363 (59.50%), Query Frame = 1
Query: 2449 VPYFDIEVQTTT--TGCVYYDQKISDWSDGGCRIGPLSNMKETHCLCNHLTWL-SSFYVPPRKLNIQAQLLKLKNLEEYPAILATFCVIMGVSLVAMIWARRKDLNDTGCNEPTMLRSQSSRKGTTYHLAIYTGHRGGSGTTATPVLILSGEKEDSQPLILKNEQRKLFDRGSVETFVFTSEQDLGDLKYLTIWHDDVGANPSWFLSRITITNLNTSKQQQCFCNDWLAVDQSDGLISRVLPIASDSELKSFENIFLAKATQDLTDGHIWFSIIMRPARSNFSRVQRVACCXXXXXXXXXXNAMFFRVDETRTAGDEINVSGVAVRWSTIVIGIQSALIVLPINIFIVLLFRRAAPDTSVKDQ 3528
P D+ V TT + CV++D+ W D GC++GP ++ +THCLCNHLT+ S+F V +NI E+ P ++ T + V ++ +IWARRKD D + T+L Y + +YTGHR G+ T++ + L G + +P L + +F+RG+V+ F+ ++ LG+L+ L +WHD+ G PSW++SR+ + +L ++ CN WL+++ D ++ +V P+A++ + K F ++F K + DGHIW+SI R ARS+F+RVQRV+CC SLLL TML++ MF+ V + A ++++ + W ++IG++S++++ PIN+ IV +F+ P + K+Q
Sbjct: 1266 APGRDLTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKD-PAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVA-KEQ 1626 The following BLAST results are available for this feature:
BLAST of TCONS_00046160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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