|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046150 ID=TCONS_00046150|Name=TCONS_00046150|organism=Clytia hemisphaerica|type=transcript|length=1468bp
NNAATGCATGTTTAGAATATCTTGCTAAGTATGCCTCAAAGGCAGAAAAA
ATATCAGATGTTGCTCGAGACGCTTTTGTTTCTGTTGTTGAGAATTTAAA
AGGAAATGAACAAATGAGATCTGTTATTCAGAAATTAATGATTAGAGCTG
TCGGGAAAGAGATTTTAGTATACAAGAGGTAATGCACCATATATTATCAT
TAAAACTGGTCAGTTCATCTTTTCAAGTTGTTAATGTTTCAGTTGACGGA
TCTAGAAAGCTTGAAATCAATAATGAGGATGTCCTTACTGAAGCTTCAAC
TGTTGATAATTATGCTAACAGAGCTAACCTTGAAGGATGTGATGCATTCG
TTTTAGATAGCAATTTTATGCAATTTGTTTCGAACTATTCAGTGCAaaaa
gatgttttgaaaaaacgtAAGAAGCCAGTTATTGTTAGAGCCTTCCCAAC
ACCATCATTTGATCCAAAAGGACCtaatttttatgtattttgcaAATACC
AACTGCTGAAATACAAACCATGGAGGACCAGGATTAGTGATGCATGGGAT
GGTTTAAGTGAGAATGATACTGATATGTTTTGCCAAAAATGGAATGAGTT
TTTGCAAACTGATTTAGGTCAAAGTGTTGTCCCTAATTGGAGAAGAGAAT
TTAATAATGCTGAATTATAGTTTGAAAGGTCAGAAACTGATTAGTTTGAA
GAGAATGTTGAAGGGGAACGTGAAGAATGGATGCACTTAGCTGATTTATG
TGCGAATAACAACGAAATTAATCAAGATGAACCATCTCATAACGATTTAG
AATATTGGCAGTCTTGTAGAAATAATTACACTGAAGAGCAGATTGGAAAT
ATGGTTTCTTGGCTTGACAAAAGAAAAGCCGAAATGTCTGAGAACCCAGT
TGAACAAGTGTTTGAACTAAAAGTAGACTCCCTTAATGAGTCtcaaagaa
aagcatttgatatATTATTAGATCATGATATGAATCAGAGTGATCAGCTA
TTCATGATGATTACCGGGTTAGCAGGGAGTGGAAAAAGTTACTTAATTAA
TAACATTagagctttactgaaagagAAATGTATTGTATCAGCCTACTTTG
GAATAGCTGCATTTAATATTAATGGTAAGACTTTGCATTCTTTATTGAAT
CTTCCAATAAGAGGAAAAAACCGAAACGATTTGAAGGGTCCTGCACTCTT
ACGACTACAAGAAAGACTCAGTGGAATTAGATATATAATTATTGATGAGT
ATTCtgttgttggtcaaaatatGCTAGGATGGATAGATAAACGGTGTAGA
CAAGGAACAGGTGAATCAGGCAAAGCTTTTGGTGGAATATCTATAATCTT
GGTAGGAGACATTGCTCAATTACCCCCTGTTGGAGATGAAGTATTGTATC
ATAAGAAACCTAGAAGTGAAATTGGTACATTGGGTTTTTGCATGTATAGA
AGGTTTACGACTGTGATN Run BLAST on NCBI transcript from alignment at scaffold_106:8652..10119- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046150 ID=TCONS_00046150|Name=TCONS_00046150|organism=Clytia hemisphaerica|type=transcript|length=1468bp|location=Sequence derived from alignment at scaffold_106:8652..10119- (Clytia hemisphaerica)
NNAATGCATGTTTAGAATATCTTGCTAAGTATGCCTCAAAGGCAGAAAAA
ATATCAGATGTTGCTCGAGACGCTTTTGTTTCTGTTGTTGAGAATTTAAA
AGGAAATGAACAAATGAGATCTGTTATTCAGAAATTAATGATTAGAGCTG
TCGGGAAAGAGATTTTAGTATACAAGAGGTAATGCACCATATATTATCAT
TAAAACTGGTCAGTTCATCTTTTCAAGTTGTTAATGTTTCAGTTGACGGA
TCTAGAAAGCTTGAAATCAATAATGAGGATGTCCTTACTGAAGCTTCAAC
TGTTGATAATTATGCTAACAGAGCTAACCTTGAAGGATGTGATGCATTCG
TTTTAGATAGCAATTTTATGCAATTTGTTTCGAACTATTCAGTGCAAAAA
GATGTTTTGAAAAAACGTAAGAAGCCAGTTATTGTTAGAGCCTTCCCAAC
ACCATCATTTGATCCAAAAGGACCTAATTTTTATGTATTTTGCAAATACC
AACTGCTGAAATACAAACCATGGAGGACCAGGATTAGTGATGCATGGGAT
GGTTTAAGTGAGAATGATACTGATATGTTTTGCCAAAAATGGAATGAGTT
TTTGCAAACTGATTTAGGTCAAAGTGTTGTCCCTAATTGGAGAAGAGAAT
TTAATAATGCTGAATTATAGTTTGAAAGGTCAGAAACTGATTAGTTTGAA
GAGAATGTTGAAGGGGAACGTGAAGAATGGATGCACTTAGCTGATTTATG
TGCGAATAACAACGAAATTAATCAAGATGAACCATCTCATAACGATTTAG
AATATTGGCAGTCTTGTAGAAATAATTACACTGAAGAGCAGATTGGAAAT
ATGGTTTCTTGGCTTGACAAAAGAAAAGCCGAAATGTCTGAGAACCCAGT
TGAACAAGTGTTTGAACTAAAAGTAGACTCCCTTAATGAGTCTCAAAGAA
AAGCATTTGATATATTATTAGATCATGATATGAATCAGAGTGATCAGCTA
TTCATGATGATTACCGGGTTAGCAGGGAGTGGAAAAAGTTACTTAATTAA
TAACATTAGAGCTTTACTGAAAGAGAAATGTATTGTATCAGCCTACTTTG
GAATAGCTGCATTTAATATTAATGGTAAGACTTTGCATTCTTTATTGAAT
CTTCCAATAAGAGGAAAAAACCGAAACGATTTGAAGGGTCCTGCACTCTT
ACGACTACAAGAAAGACTCAGTGGAATTAGATATATAATTATTGATGAGT
ATTCTGTTGTTGGTCAAAATATGCTAGGATGGATAGATAAACGGTGTAGA
CAAGGAACAGGTGAATCAGGCAAAGCTTTTGGTGGAATATCTATAATCTT
GGTAGGAGACATTGCTCAATTACCCCCTGTTGGAGATGAAGTATTGTATC
ATAAGAAACCTAGAAGTGAAATTGGTACATTGGGTTTTTGCATGTATAGA
AGGTTTACGACTGTGATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046150-exon-scaffold_106-1575043694:8652..10119 | TCONS_00046150-exon-scaffold_106-1575043694:8652..10119 | Clytia hemisphaerica | exon |
| TCONS_00046150-exon-scaffold_106-1510915933:8652..10119 | TCONS_00046150-exon-scaffold_106-1510915933:8652..10119 | Clytia hemisphaerica | exon |
| TCONS_00046150-exon-scaffold_106-1491911889:8652..10119 | TCONS_00046150-exon-scaffold_106-1491911889:8652..10119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:8652..10119 - |
Blast
The following BLAST results are available for this feature:
|
