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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046148 ID=TCONS_00046148|Name=TCONS_00046148|organism=Clytia hemisphaerica|type=transcript|length=617bp
ATACTGATATGTTTTGCCAAAAATGGAATGAGTTTTTGCAAACTGATTTA
GGTCAAAGTGTTGTCCCTAATTGGAGAAGAGAATTTAATAATGCTGAATT
ATAGTTTGAAAGGTCAGAAACTGATTAGTTTGAAGAGAATGTTGAAGGGG
AACGTGAAGAATGGATGCACTTAGCTGATTTATGTGCGAATAACAACGAA
ATTAATCAAGATGAACCATCTCATAACGATTTAGAATATTGGCAGTCTTG
TAGAAATAATTACACTGAAGAGCAGATTGGAAATATGGTTTCTTGGCTTG
ACAAAAGAAAAGCCGAAATGTCTGAGAACCCAGTTGAACAAGTGTTTGAA
CTAAAAGTAGACTCCCTTAATGAGTCtcaaagaaaagcatttgatatATT
ATTAGATCATGATATGAATCAGAGTGATCAGCTATTCATGATGATTACCG
GGTTAGCAGGGAGTGGAAAAAGTTACTTAATTAATAACATTagagcttta
ctgaaagagAAATGTATTGTATCAGCCTACTTTGGAATAGCTGCATTTAA
TATTAATGCTCGATTTGAAATACATGTCACAAACACAATTCAATGATGCT
TCTACATGACACTTCCT Run BLAST on NCBI protein sequence of TCONS_00046148-protein >TCONS_00046148-protein ID=TCONS_00046148-protein|Name=TCONS_00046148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MHLADLCANNNEINQDEPSHNDLEYWQSCRNNYTEEQIGNMVSWLDKRKA
EMSENPVEQVFELKVDSLNESQRKAFDILLDHDMNQSDQLFMMITGLAGS
GKSYLINNIRALLKEKCIVSAYFGIAAFNINARFEIHVTNTIQ Run BLAST on NCBI transcript from alignment at scaffold_106:7611..9553- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046148 ID=TCONS_00046148|Name=TCONS_00046148|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at scaffold_106:7611..9553- (Clytia hemisphaerica)
ATACTGATATGTTTTGCCAAAAATGGAATGAGTTTTTGCAAACTGATTTA
GGTCAAAGTGTTGTCCCTAATTGGAGAAGAGAATTTAATAATGCTGAATT
ATAGTTTGAAAGGTCAGAAACTGATTAGTTTGAAGAGAATGTTGAAGGGG
AACGTGAAGAATGGATGCACTTAGCTGATTTATGTGCGAATAACAACGAA
ATTAATCAAGATGAACCATCTCATAACGATTTAGAATATTGGCAGTCTTG
TAGAAATAATTACACTGAAGAGCAGATTGGAAATATGGTTTCTTGGCTTG
ACAAAAGAAAAGCCGAAATGTCTGAGAACCCAGTTGAACAAGTGTTTGAA
CTAAAAGTAGACTCCCTTAATGAGTCTCAAAGAAAAGCATTTGATATATT
ATTAGATCATGATATGAATCAGAGTGATCAGCTATTCATGATGATTACCG
GGTTAGCAGGGAGTGGAAAAAGTTACTTAATTAATAACATTAGAGCTTTA
CTGAAAGAGAAATGTATTGTATCAGCCTACTTTGGAATAGCTGCATTTAA
TATTAATGGTAAGACTTTGCATTCTTTATTGAATCTTCCAATAAGAGGAA
AAAACCGAAACGATTTGAAGGGTCCTGCACTCTTACGACTACAAGAAAGA
CTCAGTGGAATTAGATATATAATTATTGATGAGTATTCTGTTGTTGGTCA
AAATATGCTAGGATGGATAGATAAACGGTGTAGACAAGGAACAGGTGAAT
CAGGCAAAGCTTTTGGTGGAATATCTATAATCTTGGTAGGAGACATTGCT
CAATTACCCCCTGTTGGAGATGAAGTATTGTATCATAAGAAACCTAGAAG
TGAAATTGGTACATTGGGTTTTTGCATGTATAGAAGGTTTACGACTGTGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTA
AGAAACGGTGATTCAACTGAGGAAGANNAGTAATGTTGACTAGAAACCTT
TGGACAGACCAAGGACTTTGTAATGGGTCAATGGGAATAGTTAAAGATAT
TATTTATCAAGAAGGAGATTCTCCTCCAAATCTACCTATAGCTGTTATTG
TTCAATTTGACTCTTTTTATAAAGGACCAAGTATATGCGAAGACCAGCCT
CGCTGTGTTCCGATTATTCCTTTAACAAATTCTTCAGACCTTCGCGGTAC
ATCGCATGAGCGACAACAGCTACCTTTGAGATTGTCTTGGGCAATAACTA
TTCACAAGTCTCAAGGATAAACTTTGAATAAAGCATGGATTGATTTAGGA
AATACAGAAAGATTTATTGGTTTAGCGTATGTTGGGATCTCAAGAGTGAG
AAAGCTAAAAGATATGATAATCGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATGACATTAGAGCGATTACAAGATATT
AAGAAAAGGAAAAATTTTAAATTTAGAGAATTAGAAGAACAGAAAATTAA
CGGTTTGGCACTAGAAACTGAGGCGAGATTGATTTGATAAGGGTGTACAT
TGATGAGAACTAAACGTTTTTAATGACTGGGTGGGTGGTAATACATTTTC
AAAATTGTAAATAATGATTTTTTTCTATTTAAAGCTCGATTTGAAATACA
TGTCACAAACACAATTCAATGATGCTTCTACATGACACTTCCT Coding sequence (CDS) from alignment at scaffold_106:7611..9553- >TCONS_00046148 ID=TCONS_00046148|Name=TCONS_00046148|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_106:7611..9553- (Clytia hemisphaerica)
CTCGATTTGAAATACATGTCACAAACACAATTCAATGAATGCACTTAGCT
GATTTATGTGCGAATAACAACGAAATTAATCAAGATGAACCATCTCATAA
CGATTTAGAATATTGGCAGTCTTGTAGAAATAATTACACTGAAGAGCAGA
TTGGAAATATGGTTTCTTGGCTTGACAAAAGAAAAGCCGAAATGTCTGAG
AACCCAGTTGAACAAGTGTTTGAACTAAAAGTAGACTCCCTTAATGAGTC
TCAAAGAAAAGCATTTGATATATTATTAGATCATGATATGAATCAGAGTG
ATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGAAAAAGTTAC
TTAATTAATAACATTAGAGCTTTACTGAAAGAGAAATGTATTGTATCAGC
CTACTTTGGAATAGCTGCATTTAATATTAATGCTCGATTTGAAATACATG
TCACAAACACAATTCAATGAATGCACTTAGCTGATTTATGTGCGAATAAC
AACGAAATTAATCAAGATGAACCATCTCATAACGATTTAGAATATTGGCA
GTCTTGTAGAAATAATTACACTGAAGAGCAGATTGGAAATATGGTTTCTT
GGCTTGACAAAAGAAAAGCCGAAATGTCTGAGAACCCAGTTGAACAAGTG
TTTGAACTAAAAGTAGACTCCCTTAATGAGTCTCAAAGAAAAGCATTTGA
TATATTATTAGATCATGATATGAATCAGAGTGATCAGCTATTCATGATGA
TTACCGGGTTAGCAGGGAGTGGAAAAAGTTACTTAATTAATAACATTAGA
GCTTTACTGAAAGAGAAATGTATTGTATCAGCCTACTTTGGAATAGCTGC
ATTTAATATTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046148-exon-scaffold_106-1575043694:8996..9553 | TCONS_00046148-exon-scaffold_106-1575043694:8996..9553 | Clytia hemisphaerica | exon |
| TCONS_00046148-exon-scaffold_106-1575043694:7611..7669 | TCONS_00046148-exon-scaffold_106-1575043694:7611..7669 | Clytia hemisphaerica | exon |
| TCONS_00046148-exon-scaffold_106-1510915933:8996..9553 | TCONS_00046148-exon-scaffold_106-1510915933:8996..9553 | Clytia hemisphaerica | exon |
| TCONS_00046148-exon-scaffold_106-1510915933:7611..7669 | TCONS_00046148-exon-scaffold_106-1510915933:7611..7669 | Clytia hemisphaerica | exon |
| TCONS_00046148-exon-scaffold_106-1491911889:8996..9553 | TCONS_00046148-exon-scaffold_106-1491911889:8996..9553 | Clytia hemisphaerica | exon |
| TCONS_00046148-exon-scaffold_106-1491911889:7611..7669 | TCONS_00046148-exon-scaffold_106-1491911889:7611..7669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:7611..9553 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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