TCONS_00046147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046147
Unique NameTCONS_00046147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046147 ID=TCONS_00046147|Name=TCONS_00046147|organism=Clytia hemisphaerica|type=transcript|length=2573bp
AATTAAACCAcgtaaaaaaaacaatgaaaactaAAATCTCTCCTATTATC
TATAGTAAAATATACTAAAAGTTCTTAGATCAAACTATTTCTATAAAGTA
AAATTCGAAAAAAGTAATTGTAACACTTCAAAATCACACCAAAAGAAAGG
TTCTATTTAAATGAATTCAACATAAGAGGATGGAACTAACCCTTCACCGT
CGACTCCTTTCAATTTAAACCAATCATCTTGTTCTTCAAGCAAAATCAAT
ATCTGTCCTTCATCAACATTAATTTCACTTGGGTTTTCCCCATTAAATTC
ATATAATGCTCTCACGGCGCGTTGATTACCTATCAACTCCATGACATAAC
TACATGGGAAAAAACCTTCATAATTGTTCAATCGTCCTTTCCACCATTCA
GCATCAGTTTTATCCAGAATTTGGACAATACTACCAGAAGTGAAAGAAAG
GTCACTGGATTCATCAGAACGATAATCATAGAGCGCAATACACTCTCTTG
GTTTCGATGGTTTAGCAGCCAGCGTTGGTTTTTTGGATAGACTTGGTTTG
CTCGATATGACTGGCTTGTTTGAATCAATCGCAGGTTTAGTGGACGTTGC
TGGTTTTGGTTTTGATCCAGTAGGTTTAGGACTTGATGATGGTTTTGCTG
CTGTGGTTGGTTTCTTTGGGCTGACTCCTGGTTTTGTAGGCAAGATGGGC
GGTGGTAGTTTATTGTTGAAACTGTTAGATCTAGCAGACGCTCCGTCTTC
TTGAGTTGGTCTGGCAGGTTGGCGATTTGGAAGTGGTGGTGCACTAAGTT
GACGAGCAAGATCAGACTGTAGAGAATTGAATTGCTGGTTGAATTTCTGT
TCTGGTGGATTGTACTGGTTTGACATTGTGGGTTTAAGCGATGGTTGGTT
GAATTGATTCGGCACTGTTGGTTGCAATATGTTAAATTGTTGAGATGGTG
GATTGTGGATCTCATCCTCTTCATCAGAAAAAGTATCATCAAACTCGTCA
TCATCAAAATAGTCAAACTCGTCCCCACTCTCTAAATCAATCAAATCATA
CACTTCAGCAGTTTCTGTTTTTCCAGAAACCATCGGTGAAGGTAGTTGGC
TATCGGACACTGACGGTGACCTTGCTTTGATATCCACACCACCACAAAAT
GGTACATTAGTAGCACATTTCTTATGGACAACCATTTTACATGAACTGCA
GACATAGCCTTTGACAAAAGTAGTCACAAGCTTTTGACAATAATAACACT
GTGATGGTTTCATCAAACGTGATTGGATGAAAGCATGTGGAGTTTGGCCG
TCTTTGGGAGCTGCATGATGTCTTGGTGATTTTCTAgtatgttttctttc
acttagtACATTACTTGGGAGTGGCCCTAAGAAGCCAGTAACACGGTCAG
TATAAAGCTCCATCTGTTTTAATAAAACATTCAAGTTTGCTTCTTTATCA
CAGATACTGAGAAGTTCAACTAGATCATCAAGAGAAGGGTCTTTGGAGGG
TTTGGACTCTGCTTGGCGTTCACCAGCTCTGAGAGTTGCAATGTTATCAA
CAAGTTCACCTGTTTGTTGTTGTAATGCAGCAAGCCTCCTCTGTAAATTT
GGTCCTGTAAatttattcaatacaaaatTTGGGTCCAACGTTTCAATAGC
AACAGACATTCTTCGATTAGTATCAGTTTTAGGCACTGAGAAGGCTTGCT
GAGGTGGTGTTTTGTCTTTCACGTGTCCTTTAGTTTTCTTAATAAATTTT
GTCAAATCTGAAACCAAATCAATTTTATCAGTAGCATGGTCAATCTTGTC
AACACTTTTACTGATTTTCTTTAACGTTTCTTTTTGTACCGAAAACATAT
ATTTCACATGATGACGCAACGAATCATTCATTTCAGCTTGGTTTGTCTCT
ATGCTGTGAACAACGTGAGGTAGTACATGCGTGTACAACAGATTATGCAT
GCTATTAACTGACGACAGTCGAAGCAAGTAGGTATTATGGGAATTGTGAT
ACATTAATTCTTGTTTACTTTTATCAGCTTCAGTTGAGCTTTTTAACTTG
TTTGCAGCGTCATTGTAATCTTTATACCGTTTGACAAggtcttcttcttt
ttttcgaatCTGTTGCTGAAAGGAGTTAGTGtaaaaaaaacaggttttcc
aAATTTCCTTCTTTTTATCAACAGTTTCTTGTAAGGGTACAACAACACAT
TCGGTGTAACTGCTACCCACAGATTGGAGGATTTTGGCTTGATTTTCCAT
TTGCTCAAAAACTCTTGAGATAAATTTCTGGAAACTTTCATTCTGGCAAT
TTGGTTTAGCTTTGTTAACTTCgctaattttctttttgaaattgtcaACG
AGGTTGAGTATAGAAACTGCAGCATCATCATGGATTATAGCCACTCTTTG
AACAAGCTCCAACAAAACTTTGGTTGTTTTACTGGAATGAGCAAGATTTT
CATGAATGGCATCAGCTAAGGATGGTGATACACTGGTGTATTTTGGAGTA
ATTTCTGGAAAAGCAGCCGACATCTTGATGAGGGTGTTAACTAGAAAAAA
AGAAGTGAAactttttattagaa
Run BLAST on NCBI

transcript from alignment at scaffold_106:364419..367049+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046147 ID=TCONS_00046147|Name=TCONS_00046147|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at scaffold_106:364419..367049+ (Clytia hemisphaerica)
AATTAAACCAcgtaaaaaaaacaatgaaaactaAAATCTCTCCTATTATC
TATAGTAAAATATACTAAAAGTTCTTAGATCAAACTATTTCTATAAAGTA
AAATTCGAAAAAAGTAATTGTAACACTTCAAAATCACACCAAAAGAAAGG
TTCTATTTAAATGAATTCAACATAAGAGGATGGAACTAACCCTTCACCGT
CGACTCCTTTCAATTTAAACCAATCATCTTGTTCTTCAAGCAAAATCAAT
ATCTGTCCTTCATCAACATTAATTTCACTTGGGTTTTCCCCATTAAATTC
ATATAATGCTCTCACGGCGCGTTGATTACCTATCAACTCCATGACATAAC
TACATGGGAAAAAACCTTCATAATTGTTCAATCTTCCTTTCCACCATTCA
GNCATAACTACATGGGAAAAAACCTTCATAATTGTTCAATCGTCCTTTCC
ACCATTCAGCATCAGTTTTATCCAGAATTTGGACAATACTACCAGAAGTG
AAAGAAAGGTCACTGGATTCATCAGAACGATAATCATAGAGCGCAATACA
CTCTCTTGGTTTCGATGGTTTAGCAGCCAGCGTTGGTTTTTTGGATAGAC
TTGGTTTGCTCGATATGACTGGCTTGTTTGAATCAATCGCAGGTTTAGTG
GACGTTGCTGGTTTTGGTTTTGATCCAGTAGGTTTAGGACTTGATGATGG
TTTTGCTGCTGTGGTTGGTTTCTTTGGGCTGACTCCTGGTTTTGTAGGCA
AGATGGGCGGTGGTAGTTTATTGTTGAAACTGTTAGATCTAGCAGACGCT
CCGTCTTCTTGAGTTGGTCTGGCAGGTTGGCGATTTGGAAGTGGTGGTGC
ACTAAGTTGACGAGCAAGATCAGACTGTAGAGAATTGAATTGCTGGTTGA
ATTTCTGTTCTGGTGGATTGTACTGGTTTGACATTGTGGGTTTAAGCGAT
GGTTGGTTGAATTGATTCGGCACTGTTGGTTGCAATATGTTAAATTGTTG
AGATGGTGGATTGTGGATCTCATCCTCTTCATCAGAAAAAGTATCATCAA
ACTCGTCATCATCAAAATAGTCAAACTCGTCCCCACTCTCTAAATCAATC
AAATCATACACTTCAGCAGTTTCTGTTTTTCCAGAAACCATCGGTGAAGG
TAGTTGGCTATCGGACACTGACGGTGACCTTGCTTTGATATCCACACCAC
CACAAAATGGTACATTAGTAGCACATTTCTTATGGACAACCATTTTACAT
GAACTGCAGACATAGCCTTTGACAAAAGTAGTCACAAGCTTTTGACAATA
ATAACACTGTGATGGTTTCATCAAACGTGATTGGATGAAAGCATGTGGAG
TTTGGCCGTCTTTGGGAGCTGCATGATGTCTTGGTGATTTTCTAgtatgt
tttctttcacttagtACATTACTTGGGAGTGGCCCTAAGAAGCCAGTAAC
ACGGTCAGTATAAAGCTCCATCTGTTTTAATAAAACATTCAAGTTTGCTT
CTTTATCACAGATACTGAGAAGTTCAACTAGATCATCAAGAGAAGGGTCT
TTGGAGGGTTTGGACTCTGCTTGGCGTTCACCAGCTCTGAGAGTTGCAAT
GTTATCAACAAGTTCACCTGTTTGTTGTTGTAATGCAGCAAGCCTCCTCT
GTAAATTTGGTCCTGTAAatttattcaatacaaaatTTGGGTCCAACGTT
TCAATAGCAACAGACATTCTTCGATTAGTATCAGTTTTAGGCACTGAGAA
GGCTTGCTGAGGTGGTGTTTTGTCTTTCACGTGTCCTTTAGTTTTCTTAA
TAAATTTTGTCAAATCTGAAACCAAATCAATTTTATCAGTAGCATGGTCA
ATCTTGTCAACACTTTTACTGATTTTCTTTAACGTTTCTTTTTGTACCGA
AAACATATATTTCACATGATGACGCAACGAATCATTCATTTCAGCTTGGT
TTGTCTCTATGCTGTGAACAACGTGAGGTAGTACATGCGTGTACAACAGA
TTATGCATGCTATTAACTGACGACAGTCGAAGCAAGTAGGTATTATGGGA
ATTGTGATACATTAATTCTTGTTTACTTTTATCAGCTTCAGTTGAGCTTT
TTAACTTGTTTGCAGCGTCATTGTAATCTTTATACCGTTTGACAAggtct
tcttctttttttcgaatCTGTTGCTGAAAGGAGTTAGTGtaaaaaaaaca
ggttttccaAATTTCCTTCTTTTTATCAACAGTTTCTTGTAAGGGTACAA
CAACACATTCGGTGTAACTGCTACCCACAGATTGGAGGATTTTGGCTTGA
TTTTCCATTTGCTCAAAAACTCTTGAGATAAATTTCTGGAAACTTTCATT
CTGGCAATTTGGTTTAGCTTTGTTAACTTCgctaattttctttttgaaat
tgtcaACGAGGTTGAGTATAGAAACTGCAGCATCATCATGGATTATAGCC
ACTCTTTGAACAAGCTCCAACAAAACTTTGGTTGTTTTACTGGAATGAGC
AAGATTTTCATGAATGGCATCAGCTAAGGATGGTGATACACTGGTGTATT
TTGGAGTAATTTCTGGAAAAGCAGCCGACATCTTGATGAGGGTGTTAACT
AGAAAAAAAGAAGTGAAactttttattagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029479XLOC_029479Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046147-exon-scaffold_106-1491911889:364419..364763TCONS_00046147-exon-scaffold_106-1491911889:364419..364763Clytia hemisphaericaexon
TCONS_00046147-exon-scaffold_106-1510915933:364419..364763TCONS_00046147-exon-scaffold_106-1510915933:364419..364763Clytia hemisphaericaexon
TCONS_00046147-exon-scaffold_106-1575043694:364419..364763TCONS_00046147-exon-scaffold_106-1575043694:364419..364763Clytia hemisphaericaexon
TCONS_00046147-exon-scaffold_106-1491911889:364822..367049TCONS_00046147-exon-scaffold_106-1491911889:364822..367049Clytia hemisphaericaexon
TCONS_00046147-exon-scaffold_106-1510915933:364822..367049TCONS_00046147-exon-scaffold_106-1510915933:364822..367049Clytia hemisphaericaexon
TCONS_00046147-exon-scaffold_106-1575043694:364822..367049TCONS_00046147-exon-scaffold_106-1575043694:364822..367049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:364419..367049 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.15933	5.21825	1.11427	0	10.6719	7.03144	7.69975	8.11737	0	0.989584	2.54715	1.5052e-10	0.0826383	1.17534	3.77748	4.27413	4.00189	4.84705	0.563788	1.14069	2.76557	2.16413	15.5962	13.4783	4.46429	3.61891	1.9413	0	12.107	11.4372
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR002219PE/DAG-bd
IPR027267AH/BAR-dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00046147 vs. Swiss-Prot (Human)
Match: SH319 (SH3 domain-containing protein 19 OS=Homo sapiens GN=SH3D19 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.547e-19
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = -3 
Query:  154 CIALYDYRSDESSDLSFTSGSIVQILDKTDAEWWKGRLNNYEGFFPCSYV----------MELIGNQRAVRALYEFNGENPSEINVDEGQILILLEE-QDDWFKLKGVDGEGLVPSSYVEFI*I 492
            C AL+ + ++ S DLSF  G  +QIL++ D++W +GRL + EG FP  +V          + ++   R  +ALY+F GEN  E++   G I+  LE   DDW   + +   G+ P +Y++F+ I
Sbjct:  666 CEALHSFTAETSDDLSFKRGDRIQILERLDSDWCRGRLQDREGIFPAVFVRPCPAEAKSMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITELESVDDDWMSGELMGKSGIFPKNYIQFLQI 789
The following BLAST results are available for this feature:
BLAST of TCONS_00046147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SH3196.547e-1934.68SH3 domain-containing protein 19 OS=Homo sapiens G... [more]
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